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Zeng J, Li X, Song R, Xie H, Li X, Liu W, Liu H, Du Y, Xu M, Ren C, Yang G, Han X. Mechanisms of litter input changes on soil organic carbon dynamics: a microbial carbon use efficiency-based perspective. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175092. [PMID: 39079645 DOI: 10.1016/j.scitotenv.2024.175092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2024] [Revised: 07/23/2024] [Accepted: 07/25/2024] [Indexed: 08/03/2024]
Abstract
Plant litter is an important source of soil organic carbon (SOC) in terrestrial ecosystems, and the pattern of litter inputs is also influenced by global change and human activities. However, the current understanding of the impact of changes in litter inputs on SOC dynamics remains contentious, and the mechanisms by which changes in litter inputs affect SOC have rarely been investigated from the perspective of microbial carbon use efficiency (CUE). We conducted a 1-year experiment with litter treatments (no aboveground litter (NL), natural aboveground litter (CK), and double aboveground litter (DL)) in Robinia pseudoacacia plantation forest on the Loess Plateau. The objective was to assess how changes in litter input affect SOC accumulation in forest soils from the perspective of microbial CUE. Results showed that NL increased soil microbial C limitation by 77.11 % (0-10 cm) compared to CK, while it had a negligible effect on nitrogen and phosphorus limitation. In contrast, DL had no significant effect on soil microbial nutrient limitation. Furthermore, NL was found to significantly increase microbial CUE and decrease microbial metabolic quotient (QCO2), while the opposite was observed with DL. It is noteworthy that NL significantly contributed to an increase in SOC of 30.72 %, while DL had no significant effect on SOC. Correlation analysis showed that CUE was directly proportional to SOC and inversely proportional to QCO2. The partial least squares pathway model indicated that NL indirectly regulated the accumulation of SOC, mainly through two pathways: promoting microbial CUE increase and reducing QCO2. Overall, this study elucidates the mechanism and novel insights regarding SOC accumulation under changes in litter input from the perspective of microbial CUE. These findings are critical for further comprehension of soil carbon dynamics and the terrestrial C-cycle.
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Affiliation(s)
- Jia Zeng
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Xiangyang Li
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Rui Song
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Haoxuan Xie
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Xiangnan Li
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Weichao Liu
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Hanyu Liu
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Yaoyao Du
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China
| | - Miaoping Xu
- Institute of Soil and Water Conservation, Northwest A&F University, Yangling 712100, Shaanxi, PR China
| | - Chengjie Ren
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Gaihe Yang
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China; Shaanxi Engineering Research Center of Circular Agriculture, Yangling 712100, Shaanxi, PR China
| | - Xinhui Han
- College of Agronomy, Northwest Agriculture & Forestry University, Yangling 712100, Shaanxi, PR China.
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Li G, Ma Z, Wei L, Wu C, Chen H, Guo B, Ge T, Wang J, Li J. Long-term agricultural cultivation decreases microbial nutrient limitation in coastal saline soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 949:175005. [PMID: 39053542 DOI: 10.1016/j.scitotenv.2024.175005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2024] [Revised: 07/12/2024] [Accepted: 07/22/2024] [Indexed: 07/27/2024]
Abstract
Soil enzyme activities are pivotal for diverse biochemical processes and are sensitive to land use changes. They can indicate soil microbial nutrient limitations. Nonetheless, the mechanism governing the response of soil microbial nutrient limitation to land use alterations in coastal regions remains elusive. We assessed soil nutrients, microbial biomass, and extracellular enzyme activities across various land use types-natural (wasteland and woodland) and agricultural (farmland and orchard)-in the Hangzhou Bay area, China. All four land use types experience co-limitation by carbon (C) and phosphorus (P). However, the extent of microbial resource limitations varies among them. Long-term agricultural practices diminish microbial C and P limitations in farmland and orchard soils compared to natural soils, as evidenced by lower ecoenzymatic C:N ratios and vector lengths, alongside higher microbial carbon use efficiency (CUE). Soil nutrient stoichiometric ratios and CUE are primary factors influencing microbial C and P limitations. Thus, fostering appropriate land use and management practices proves imperative to regulate soil nutrient cycles and foster the sustainable management of coastal areas.
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Affiliation(s)
- Guanjun Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Zhi Ma
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Liang Wei
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Cuiyan Wu
- School of Materials and Chemical Engineering, Ningbo University of Technology, Ningbo 315211, China.
| | - Hao Chen
- State Key Laboratory of Biocontrol, School of Ecology, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
| | - Bin Guo
- Institute of Environment, Resource, Soil and Fertilizer, Zhejiang Academy of Agricultural Sciences, Hangzhou 311300, China
| | - Tida Ge
- State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China
| | - Jianming Wang
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China
| | - Jingwen Li
- School of Ecology and Nature Conservation, Beijing Forestry University, Beijing 100083, China.
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Li W, Ullah S, Liu F, Deng F, Han X, Huang S, Xu Y, Yang M. Synergistic variation of rhizosphere soil phosphorus availability and microbial diversity with stand age in plantations of the endangered tree species Parashorea chinensis. FRONTIERS IN PLANT SCIENCE 2024; 15:1372634. [PMID: 38681220 PMCID: PMC11045988 DOI: 10.3389/fpls.2024.1372634] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 03/20/2024] [Indexed: 05/01/2024]
Abstract
Introduction Soil physicochemical properties and nutrient composition play a significant role in shaping microbial communities, and facilitating soil phosphorus (P) transformation. However, studies on the mechanisms of interactions between P transformation characteristics and rhizosphere microbial diversity in P-deficient soils on longer time scales are still limited. Methods In this study, rhizosphere soils were collected from a pure plantation of Parashorea chinensis (P. chinensis) at six stand ages in the subtropical China, and the dynamic transformation characteristics of microbial diversity and P fractions were analyzed to reveal the variation of their interactions with age. Results Our findings revealed that the rhizosphere soils across stand ages were in a strongly acidic and P-deficient state, with pH values ranging from 3.4 to 4.6, and available P contents ranging from 2.6 to 7.9 mg·kg-1. The adsorption of P by Fe3+ and presence of high levels of steady-state organic P highly restricted the availability of P in soil. On long time scales, acid phosphatase activity and microbial biomass P were the main drivers of P activation. Moreover, pH, available P, and ammonium nitrogen were identified as key factors driving microbial community diversity. As stand age increased, most of the nutrient content indicators firstly increased and then decreased, the conversion of other forms of P to bio-available P became difficult, P availability and soil fertility began to decline. However, bacteria were still able to maintain stable species abundance and diversity. In contrast, stand age had a greater effect on the diversity of the fungal community than on the bacteria. The Shannon and Simpson indices varied by 4.81 and 0.70 for the fungi, respectively, compared to only 1.91 and 0.06 for the bacteria. Microorganisms play a dominant role in the development of their relationship with soil P. Discussion In conclusion, rhizosphere microorganisms in P. chinensis plantations gradually adapt to the acidic, low P environment over time. This adaptation is conducive to maintaining P bioeffectiveness and alleviating P limitation.
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Affiliation(s)
- Wannian Li
- Guangxi Colleges and Universities Key Laboratory for Cultivation and Utilization of Subtropical Forest Plantation, Guangxi University, Nanning, China
| | - Saif Ullah
- Guangxi Colleges and Universities Key Laboratory for Cultivation and Utilization of Subtropical Forest Plantation, Guangxi University, Nanning, China
| | - Fang Liu
- Nanning Arboretum, Guangxi Zhuang Autonomous Region, Nanning, China
| | - Fuchun Deng
- Nanning Arboretum, Guangxi Zhuang Autonomous Region, Nanning, China
| | - Xiaomei Han
- Guangxi Colleges and Universities Key Laboratory for Cultivation and Utilization of Subtropical Forest Plantation, Guangxi University, Nanning, China
| | - Songdian Huang
- Nanning Arboretum, Guangxi Zhuang Autonomous Region, Nanning, China
| | - Yuanyuan Xu
- Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Guangxi University, Nanning, China
| | - Mei Yang
- Guangxi Colleges and Universities Key Laboratory for Cultivation and Utilization of Subtropical Forest Plantation, Guangxi University, Nanning, China
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Liu J, You C, Xu Z, Liu Y, Zhang L, Li H, Wang L, Liu S, He S, Luo Z, Tan B. Soil arthropods promote litter enzyme activity by regulating microbial carbon limitation and ecoenzymatic stoichiometry in a subalpine forest. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 876:162789. [PMID: 36914138 DOI: 10.1016/j.scitotenv.2023.162789] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2022] [Revised: 03/06/2023] [Accepted: 03/06/2023] [Indexed: 06/18/2023]
Abstract
Soil arthropods are crucial decomposers of litter at both global and local scales, yet their functional roles in mediating microbial activity during litter decomposition remain poorly understood. Here, we conducted a two-year field experiment using litterbags to assess the effects of soil arthropods on the extracellular enzyme activities (EEAs) in two litter substrates (Abies faxoniana and Betula albosinensis) in a subalpine forest. A biocide (naphthalene) was used to permit (nonnaphthalene) or exclude (naphthalene application) the presence of soil arthropods in litterbags during decomposition. Our results showed that biocide application was effective in reducing the abundance of soil arthropods in litterbags, with the density and species richness of soil arthropods decreasing by 64.18-75.45 % and 39.19-63.30 %, respectively. Litter with soil arthropods had a greater activity of C-degrading (β-glucosidase, cellobiohydrolase, polyphenol oxidase, peroxidase), N-degrading (N-acetyl-β-D-glucosaminidase, leucine arylamidase) and P-degrading (phosphatase) enzymes than litter from which soil arthropods were excluded. The contributions of soil arthropods to C-, N- and P-degrading EEAs in the fir litter were 38.09 %, 15.62 % and 61.69 %, and those for the birch litter were 27.97 %, 29.18 % and 30.40 %, respectively. Furthermore, the stoichiometric analyses of enzyme activity indicated that there was potential C and P colimitation in both the soil arthropod inclusion and exclusion litterbags, and the presence of soil arthropods decreased C limitation in the two litter species. Our structural equation models suggested that soil arthropods indirectly promoted C-, N- and P-degrading EEAs by regulating the litter C content and litter stoichiometry (e.g., N/P, LN/N and C/P) during litter decomposition. These results demonstrate that soil arthropods play an important functional role in modulating EEAs during litter decomposition.
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Affiliation(s)
- Jingru Liu
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Chengming You
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Zhenfeng Xu
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Yang Liu
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Li Zhang
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Han Li
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Lixia Wang
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Sining Liu
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Shuqin He
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Ziteng Luo
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China
| | - Bo Tan
- Institute of Ecology & Forestry, Forestry Ecological Engineering in Upper Reaches of Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu 611130, China; Key Laboratory of Forest Resources Conservation and Ecological Security in Upper Reaches of Yangtze River, Chengdu 611130, China.
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Sun S, Ma B, Wang G, Tan X. Linking microbial biogeochemical cycling genes to the rhizosphere of pioneering plants in a glacier foreland. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 872:161944. [PMID: 36737018 DOI: 10.1016/j.scitotenv.2023.161944] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 01/27/2023] [Accepted: 01/27/2023] [Indexed: 06/18/2023]
Abstract
Glacier retreat raises global concerns but brings about the moment to study soil and ecosystem development. In nutrient-limited glacier forelands, the adaptability of pioneering plant and microbial species is facilitated by their interactions, including rhizosphere effects, but the details of this adaptability are not yet understood. In the rhizosphere of five pioneering plants, we comprehensively deciphered the microbial taxonomic and functional compositions. Two nitrogen-fixing microbial genera, Bradyrhizobium and Mesorhizobium, were among the most abundant taxa in the rhizomicrobiome. Moreover, several rhizobial genera, including Rhizobium, Pararhizobium, Allohrizobium, and Sinorhizobium, head the list of major modules in microbial co-occurrence networks, highlighting the vital roles of nitrogen-cycling taxa in the rhizomicrobiome of pioneering plants. Microbial genes involved in nitrogen, sulfur, phosphorus, and methane cycles were simultaneously correlated with microbial community dissimilarity, and 12 functional pathways were detected with distinct relative abundances among soils. Zooming in on the nitrogen-cycling genes, nifW, narC, nasA, nasB, and nirA were mainly responsible for the significant differences between soils. Furthermore, soil pH and the carbon/nitrogen ratio were among the topsoil properties interacting with nitrogen and sulfur cycling gene dissimilarity. These results explicitly linked biogeochemical cycling genes to the rhizomicrobiome and soil properties, revealing the roles of these genes as microbial drivers in mediating rhizosphere soil-plant-microbiome interactions.
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Affiliation(s)
- Shouqin Sun
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu 610065, China.
| | - Bin Ma
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Genxu Wang
- State Key Laboratory of Hydraulics and Mountain River Engineering, College of Water Resource and Hydropower, Sichuan University, Chengdu 610065, China.
| | - Xiangfeng Tan
- Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China; Institute of Digital Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China.
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Mao N, Shao M, Wang X, Wei X. Earthworms regulate plants' effects on soil microbial nutrient limitations: Examinations with contrasting soils and moisture. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 329:117061. [PMID: 36563447 DOI: 10.1016/j.jenvman.2022.117061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2022] [Revised: 11/25/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
Soil microbial nutrient limitations significantly affect microbial processes and thus ecosystem functionality, whereas the response of soil microbial nutrient limitations to earthworms has rarely been addressed but is urgently needed due to the important role of earthworms in terrestrial ecosystems. By examining how earthworms regulate plants' effects on microbial nutrient limitations under contrasting soil types and moisture conditions, we showed that plant presence reduced microbial carbon (C) limitation and such reduction was enhanced by earthworm. Plant presence increased soil microbial phosphorus (P) limitation in soils with earthworms in most cases. Additionally, the effects of plants on microbial nutrient limitations and their responses to earthworms were dependent on soil type (or soil nutrients) and moisture. These results suggested that earthworms have the potential to reduce soil microbial C limitation but enhance P limitation and highlighted the importance of nutrients and moisture in influencing the effects of earthworms and plants on microbial nutrient limitations.
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Affiliation(s)
- Na Mao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, 712100, China; College of Life Science, Yan'an University, Yan'an, 716000, China
| | - Ming'an Shao
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an, 710061, China
| | - Xiang Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, 712100, China; College of Land Science and Technology, China Agricultural University, Beijing, 100193, China.
| | - Xiaorong Wei
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University, Yangling, 712100, China; Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling, 712100, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an, 710061, China.
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Lei J, Wu H, Li X, Guo W, Duan A, Zhang J. Response of Rhizosphere Bacterial Communities to Near-Natural Forest Management and Tree Species within Chinese Fir Plantations. Microbiol Spectr 2023; 11:e0232822. [PMID: 36688690 PMCID: PMC9927156 DOI: 10.1128/spectrum.02328-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
Near-natural forest management plays an important role in the maintenance of the long-term productivity and soil fertility of plantations. We conducted high-throughput absolute quantitative sequencing of 16S rRNA genes to compare the structures and diversity of rhizosphere soil bacterial communities among a pure Chinese fir (Cunninghamia lanceolata) plantation (S), a Cunninghamia lanceolata-Castanopsis hystrix-Michelia hedyosperma mixed plantation (SHX), and a Cunninghamia lanceolata-Castanopsis fissa mixed plantation (SD). The results revealed that near-natural forest management improved the rhizosphere soil properties of Chinese fir, especially the phosphorus content. Rhizosphere soil bacterial communities of Chinese fir in SHX and SD contained higher total absolute abundances and more unique operational taxonomic units (OTUs) than the pure plantation forest. Planctomycetes and Actinobacteria were abundant in SD, and Actinobacteria were enriched in SHX. The tree species also had an impact on the rhizosphere soil bacterial communities. For the rhizosphere soils of different tree species of SHX, the available phosphorus (AP) content of the rhizosphere of Chinese fir significantly surpassed those of Castanopsis hystrix and Michelia hedyosperma. Bacteria related to nitrogen fixing, such as Burkholderiales and Rhizobiales, were more abundant in Chinese fir in SD than in Castanopsis fissa. Acdiobacteria and Proteobacteria underpinned the differences found in the compositions of soil bacteria. The pH and soil organic matter were key variables influencing the rhizosphere soil bacterial communities. Our results demonstrated that in Chinese fir plantations, 12 years of near-natural management of introduced broad-leaved tree species can drive alterations of the physicochemical characteristics, bacterial community structure, and composition of rhizosphere soil, with tree species identity further influencing the rhizosphere soil bacterial community. IMPORTANCE Near-natural forest management is an important way to change the soil fertility decline and productivity reduction of pure Chinese fir plantations. At present, many detailed studies have been carried out on the impact of near-natural forest management on Chinese fir plantations at home and abroad. However, there are still few studies on the response of rhizosphere bacterial communities to near-natural forest management. Our study determined absolute quantities of Chinese fir rhizosphere bacterial communities in different mixed patterns. The results underscore the importance of near-natural forest management for Chinese fir plantation rhizosphere bacterial communities and provide new information on soil factors that affect rhizosphere bacterial communities in South China.
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Affiliation(s)
- Jie Lei
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, People's Republic of China
| | - Hanbin Wu
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, People's Republic of China
| | - Xiaoyan Li
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, People's Republic of China
| | - Wenfu Guo
- Experimental Center of Tropical Forestry, Chinese Academy of Forestry, Pingxiang, People's Republic of China
| | - Aiguo Duan
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, People's Republic of China
- Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, People's Republic of China
| | - Jianguo Zhang
- State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of the State Forestry Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing, People's Republic of China
- Collaborative Innovation Center of Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, People's Republic of China
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Liu S, Xu G, Chen H, Zhang M, Cao X, Chen M, Chen J, Feng Q, Shi Z. Contrasting responses of soil microbial biomass and extracellular enzyme activity along an elevation gradient on the eastern Qinghai-Tibetan Plateau. Front Microbiol 2023; 14:974316. [PMID: 36744094 PMCID: PMC9889656 DOI: 10.3389/fmicb.2023.974316] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Accepted: 01/02/2023] [Indexed: 01/19/2023] Open
Abstract
Soil microbial community composition and extracellular enzyme activity are two main drivers of biogeochemical cycling. Knowledge about their elevational patterns is of great importance for predicting ecosystem functioning in response to climate change. Nevertheless, there is no consensus on how soil microbial community composition and extracellular enzyme activity vary with elevation, and little is known about their elevational variations on the eastern Qinghai-Tibetan Plateau, a region sensitive to global change. We therefore investigated the soil microbial community composition using phospholipid fatty acids (PLFAs) analysis, and enzyme activities at 2,820 m (coniferous and broadleaved mixed forest), 3,160 m (dark coniferous forest), 3,420 m (alpine dwarf forest), and 4,280 m (alpine shrubland) above sea level. Our results showed that soil microbial community composition and extracellular enzyme activities changed significantly along the elevational gradient. Biomass of total microbes, bacteria, and arbuscular mycorrhizal fungi at the highest elevation were the significantly lowest among the four elevations. In contrast, extracellular enzyme activities involved in carbon (C)-, nitrogen (N)-, and phosphorus (P)- acquiring exhibited the maximum values at the highest elevation. Total nutrients and available nutrients, especially P availability jointly explained the elevational pattern of soil microbial community, while the elevational variation of extracellular enzyme activities was dependent on total nutrients. Microbial metabolism was mainly C- and P-limited with an increasing C limitation but a decreasing P limitation along the elevational gradient, which was related significantly to mean annual temperature and total P. These results indicated a vital role of soil P in driving the elevational patterns of soil microbial community and metabolism. Overall, the study highlighted the contrasting responses of soil microbial biomass and extracellular enzyme activities to elevation, possibly suggesting the differences in adaption strategy between population growth and resource acquisition responding to elevation. The results provide essential information for understanding and predicting the response of belowground community and function to climate change on the eastern Qinghai-Tibetan Plateau.
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Affiliation(s)
- Shun Liu
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Gexi Xu
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Huanhuan Chen
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Miaomiao Zhang
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Xiangwen Cao
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Miao Chen
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Jian Chen
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China
| | - Qiuhong Feng
- Ecological Restoration and Conservation on Forest and Wetland Key Laboratory of Sichuan Province, Sichuan Wolong Forest Ecosystem Research Station, Sichuan Academy of Forestry, Chengdu, China
| | - Zuomin Shi
- Key Laboratory of Forest Ecology and Environment of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing, China,Miyaluo Research Station of Alpine Forest Ecosystem, Lixian County, China,Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China,Institute for Sustainable Plant Protection, National Research Council of Italy, Turino, Italy,*Correspondence: Zuomin Shi, ✉
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9
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Xu S, Li K, Li G, Hu Z, Zhang J, Iqbal B, Du D. Canada Goldenrod Invasion Regulates the Effects of Soil Moisture on Soil Respiration. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:15446. [PMID: 36497518 PMCID: PMC9741181 DOI: 10.3390/ijerph192315446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/15/2022] [Accepted: 11/17/2022] [Indexed: 06/17/2023]
Abstract
Canada goldenrod (Solidago canadensis L.) is considered one of the most deleterious and invasive species worldwide, and invasion of riparian wetlands by S. canadensis can reduce vegetation diversity and alter soil nutrient cycling. However, little is known about how S. canadensis invasion affects soil carbon cycle processes, such as soil respiration, in a riparian wetland. This study was conducted to investigate the effects of different degrees of S. canadensis invasion on soil respiration under different moisture conditions. Soil respiration rate (heterotrophic and autotrophic respiration) was measured using a closed-chamber method. S. canadensis invasion considerably reduced soil respiration under all moisture conditions. The inhibition effect on autotrophic respiration was higher than that on heterotrophic respiration. The water level gradient affects the soil autotrophic respiration, thereby affecting the soil respiration rate. The changes in soil respiration may be related to the alteration in the effective substrate of the soil substrate induced by the invasion of S. canadensis. While the effects of S. canadensis invasion were regulated by the fluctuation in moisture conditions. Our results implied that S. canadensis invasion could reduce the soil respiration, which further potentially affect the carbon sequestration in the riparian wetlands. Thus, the present study provided a reference for predicting the dynamics of carbon cycling during S. canadensis invasion and constituted a scientific basis for the sustainable development and management of riparian wetlands invaded by alien plants.
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Affiliation(s)
- Sixuan Xu
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Kexin Li
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Guanlin Li
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
- Institute of Environmental Health and Ecological Security, School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Zhiyuan Hu
- WM Environmental Molecular Diagnosis Co., Ltd., Suzhou 215558, China
| | - Jiaqi Zhang
- Ministry of Education Key Laboratory for Ecology of Tropical Islands, Key Laboratory of Tropical Animal and Plant Ecology of Hainan Province, College of Life Sciences, Hainan Normal University, Haikou 571158, China
| | - Babar Iqbal
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Daolin Du
- School of Environment and Safety Engineering, Jiangsu University, Zhenjiang 212013, China
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10
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Liu Y, Xu Y, Cui X, Zhang B, Wang X, Qin X, Wang J, Li Y, Zhang W, Liu G, Chen T, Zhang G. Temporary Survival Increasing the Diversity of Culturable Heterotrophic Bacteria in the Newly Exposed Moraine at a Glacier Snout. BIOLOGY 2022; 11:biology11111555. [PMID: 36358257 PMCID: PMC9687651 DOI: 10.3390/biology11111555] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2022] [Revised: 09/11/2022] [Accepted: 10/20/2022] [Indexed: 11/05/2022]
Abstract
Laohugou Glacier No. 12 is located on the northern slope of the western Qilian Mountains with a temperate continental wet climate and an extremely cold winter. Bacteria in a newly exposed moraine have to cope with various pressures owing to deglaciation at the glacier snout. However, limited information is available regarding the high diversity and temporary survival of culturable heterotrophic bacteria under various environmental stresses. To examine the tolerance of extremophiles against varying environmental conditions in a newly exposed moraine, we simulated environmental stress in bacterial cultures. The results showed that the isolated strains belonged to actinobacteria, Proteobacteria, Bacteroidetes, Deinococcus-Thermus, and Firmicutes. Actinobacteria was the most abundant phylum, followed by Proteobacteria, at both high and low temperatures. Pseudarthrobacter was the most abundant genus, accounting for 14.2% of the total isolates. Although several microorganisms grew at 10 °C, the proportion of microorganisms that grew at 25 °C was substantially higher. In particular, 50% of all bacterial isolates grew only at a high temperature (HT), whereas 21.4% of the isolates grew at a low temperature (LT), and 38.6% of the isolates grew at both HT and LT. In addition, many radiation-resistant extremophiles were identified, which adapted to both cold and oxidative conditions. The nearest neighbors of approximately >90% of bacteria belonged to a nonglacial environment, such as oil-contaminated soil, rocks, and black sand, instead of glacial niches. This study provides insights into the ecological traits, stress responses, and temporary survival of culturable heterotrophic bacteria in a newly exposed moraine with variable environmental conditions and the relationship of these communities with the non-glacial environment. This study may help to understand the evolution, competition, and selective growth of bacteria in the transition regions between glaciers and retreats in the context of glacier melting and retreat owing to global warming.
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Affiliation(s)
- Yang Liu
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Yeteng Xu
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Xiaowen Cui
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- College of Geography and Environment Science, Northwest Normal University, Lanzhou 730070, China
| | - Binglin Zhang
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Xinyue Wang
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Xiang Qin
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Jinxiu Wang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Yanzhao Li
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing 100049, China
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
| | - Wei Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
| | - Guangxiu Liu
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- School of Stomatology, Lanzhou University, Lanzhou 730000, China
| | - Tuo Chen
- State Key Laboratory of Cryospheric Sciences, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Correspondence: (T.C.); (G.Z.)
| | - Gaosen Zhang
- Key Laboratory of Extreme Environmental Microbial Resources and Engineering, Lanzhou 730000, China
- Key Laboratory of Desert and Desertification, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China
- Correspondence: (T.C.); (G.Z.)
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11
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Xu H, Qu Q, Wang Z, Xue S, Xu Z. Plant-soil-enzyme C-N-P stoichiometry and microbial nutrient limitation responses to plant-soil feedbacks during community succession: A 3-year pot experiment in China. FRONTIERS IN PLANT SCIENCE 2022; 13:1009886. [PMID: 36204057 PMCID: PMC9531649 DOI: 10.3389/fpls.2022.1009886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Accepted: 08/29/2022] [Indexed: 06/16/2023]
Abstract
Studying plant-soil feedback (PSF) can improve the understanding of the plant community composition and structure; however, changes in plant-soil-enzyme stoichiometry in response to PSF are unclear. The present study aimed to analyze the changes in plant-soil-enzyme stoichiometry and microbial nutrient limitation to PSF, and identify the roles of nutrient limitation in PSF. Setaria viridis, Stipa bungeana, and Bothriochloa ischaemum were selected as representative grass species in early-, mid-, and late-succession; furthermore, three soil types were collected from grass species communities in early-, mid-, and late-succession to treat the three successional species. A 3-year (represents three growth periods) PSF experiment was performed with the three grasses in the soil in the three succession stages. We analyzed plant biomass and plant-soil-enzyme C-N-P stoichiometry for each plant growth period. The plant growth period mainly affected the plant C:N in the early- and late- species but showed a less pronounced effect on the soil C:N. During the three growth periods, the plants changed from N-limited to P-limited; the three successional species soils were mainly limited by N, whereas the microbes were limited by both C and N. The plant-soil-enzyme stoichiometry and plant biomass were not significantly correlated. In conclusion, during PSF, the plant growth period significantly influences the plant-soil-microbial nutrient limitations. Plant-soil-enzyme stoichiometry and microbial nutrient limitation cannot effectively explain PSF during succession on the Loess Plateau.
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Affiliation(s)
- Hongwei Xu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, China
| | - Qing Qu
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, China
| | - Zhanhui Wang
- Hebei Drinking Water Safety Monitoring Technol Inn, Chengde, China
| | - Sha Xue
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, China
| | - Zhenfeng Xu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, Sichuan Agricultural University, Chengdu, China
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12
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Ren Z, Gao H. Abundant and rare soil fungi exhibit distinct succession patterns in the forefield of Dongkemadi glacier on the central Qinghai-Tibet Plateau. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 828:154563. [PMID: 35302033 DOI: 10.1016/j.scitotenv.2022.154563] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 03/09/2022] [Accepted: 03/10/2022] [Indexed: 06/14/2023]
Abstract
Glaciers are retreating rapidly, exposing extensive new soil habitats in glacier forefields and providing unique areas for studying primary succession. However, understanding the variation patterns and assembly mechanisms of abundant and rare fungi subcommunities along the glacier-retreating chronosequence remains a knowledge gap, especially true for the vast Qinghai-Tibet Plateau (QTP). Here, we investigated fungal communities in the glacier forefield in Dongkemadi Glaicer on the central QTP. The results showed that fungal alpha diversity exhibited a clear increasing pattern in response to increasing of distance to glacier. The percentage of abundant OTUs decreased while the percentage of rare OTUs increased, suggesting that soil development is more beneficial to the rare taxa. The distributions of both abundant and rare subcommunities exhibited a clear spatial pattern along the distance to glacier, and might be strongly controlled by multiple environmental variables, including pH, soil moisture, vegetation status, soil organic carbon, total nitrogen, and soluble reactive phosphorus. Abundant and rare fungal subcommunities were structured in different assembly regimes. Dispersal limitation processes were dominant for both abundant and rare subcommunities but with a stronger contribution to abundant subcommunity assembly. Heterogeneous selection processes contributed higher and non-dominant processes contributed lower to abundant subcommunities than to rare subcommunities. The modular structure of the fungal co-occurrence network was highly localized along the soil chronosequence. By revealing distinct diversity patterns and community assembly mechanisms of abundant and rare fungal subcommunities, our study improved our understanding of ecological succession along the glacier-retreating chronosequence.
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Affiliation(s)
- Ze Ren
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai 519087, China; School of Environment, Beijing Normal University, Beijing 100875, China
| | - Hongkai Gao
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China.
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13
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Liu S, He F, Kuzyakov Y, Xiao H, Hoang DTT, Pu S, Razavi BS. Nutrients in the rhizosphere: A meta-analysis of content, availability, and influencing factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 826:153908. [PMID: 35183641 DOI: 10.1016/j.scitotenv.2022.153908] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2021] [Revised: 02/11/2022] [Accepted: 02/12/2022] [Indexed: 06/14/2023]
Abstract
Nutrient deficiency in most terrestrial ecosystems constrains global primary productivity. Rhizosphere nutrient availability directly regulates plant growth and is influenced by many factors, including soil properties, plant characteristics and climate. A quantitatively comprehensive understanding of the role of these factors in modulating rhizosphere nutrient availability remains largely unknown. We reviewed 123 studies to assess nutrient availability in the rhizosphere compared to bulk soil depending on various factors. The increase in microbial nitrogen (N) content and N-cycling related enzyme activities in the rhizosphere led to a 10% increase in available N relative to bulk soil. The available phosphorus (P) in the rhizosphere decreased by 12% with a corresponding increase in phosphatase activities, indicating extreme demand and competition between plants and microorganisms for P. Greater organic carbon (C) content around taproots (+17%) confirmed their stronger ability to store more organic compounds than the fibrous roots. This corresponds to higher bacterial and fungal contents and slightly higher available nutrients in the rhizosphere of taproots. The maximal rhizosphere nutrient accumulation was common for low-fertile soils, which is confirmed by the negative correlation between most soil chemical properties and the effect sizes of available nutrients. Increases in rhizosphere bacterial and fungal population densities (205-254%) were much higher than microbial biomass increases (indicated as microbial C: +19%). Consequently, despite the higher microbial population densities in the rhizosphere, the biomass of individual microbial cells decreased, pointing on their younger age and faster turnover. This meta-analysis shows that, contrary to the common view, most nutrients are more available in the rhizosphere than in bulk soil because of higher microbial activities around roots.
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Affiliation(s)
- Shibin Liu
- College of Ecology and Environment, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China; State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China
| | - Fakun He
- College of Earth Sciences, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China
| | - Yakov Kuzyakov
- Peoples Friendship University of Russia (RUDN University), Moscow, Russia; Department of Soil Science of Temperate Ecosystems, Department of Agricultural Soil Science, University of Göttingen, Büsgenweg 2, 37077 Göttingen, Germany
| | - Huxuan Xiao
- College of Earth Sciences, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China
| | - Duyen Thi Thu Hoang
- Climate Change and Development Program, VNU Vietnam-Japan University, Vietnam National University, Hanoi, Viet Nam
| | - Shengyan Pu
- College of Ecology and Environment, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China; State Key Laboratory of Geohazard Prevention and Geoenvironment Protection, Chengdu University of Technology, 1# Dongsanlu, Erxianqiao, Chengdu 610059, Sichuan, PR China.
| | - Bahar S Razavi
- Department of Soil and Plant Microbiome, Institute of Phytopathology, Christian-Albrechts-University of Kiel, Kiel, Germany
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14
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Wang K, Shi L, Wang S, Wang T, Ma L, Zheng W, Li Z, Wang Z, Zhai B. Responses of environmental and soil enzyme stoichiometric characteristics of wheat cropping system to fertilizer management in rain-fed areas of China. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2022; 29:41520-41533. [PMID: 35094274 DOI: 10.1007/s11356-021-18406-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2021] [Accepted: 12/26/2021] [Indexed: 06/14/2023]
Abstract
The application of organic fertilizer can improve soil fertility and maintain soil biodiversity. Soil enzyme activity can reflect the relationship between microbial nutrient demand and environmental nutrient availability. The experiment was established with a split-plot design, which included two main plots and two subplots. The main plots were 3 nitrogen levels (0, 150, 300 kg N ha-1). The two subplots were chemical fertilizer alone and combination of manure and inorganic application; the soil enzyme activity and chemical properties of each treatment were measured and analyzed. In the study, ecological enzyme stoichiometry was used to study the limitation of microbial resources in dryland wheat system. The results showed that the combined application of manure and chemical fertilizers did not significantly increase the activities of soil C, N and P cycling-related enzymes but decreased the activities of soil L-leucine aminopeptidase (LAP). Long-term application of organic fertilizer and mineral fertilizer significantly increased the accumulation of soil organic carbon (SOC) and nitrogen (TN) and increased soil microbial biomass (MBC, MBN). Organic fertilizer treatment significantly increased soil available phosphorus (AP) and soil NO3--N contents, and decreased SOC/AP and TN/AP, but had no significant changes under different nitrogen application levels (N0, N1, N2). GHG emissions were increaseed with the amount of nitrogen applied, the addition of manure did not significantly increase the CO2 and N2O emissions, and soil organic matter mineralization and gas emission fluxes decreased at ripen stage. The C-acquiring enzyme was negatively correlated with N-acquiring enzyme but positively correlated with P-acquiring enzyme. The microbial limiting effect of C and P on microbial metabolism becomes increasingly intense as the reproductive period progresses. Redundancy analysis of soil enzyme activities and chemical properties showed that soil TN and MBN could better explain the variation characteristics of soil enzyme activities. Therefore, the study of soil extracellular enzyme stoichiometry and microbial nutrient restriction can give us a more comprehensive understanding of the soil environment. There are more implications can be given under different nitrogen management modes and different growth stages. The results also provided an effective theoretical basis for regulating the changes of soil microbial environment.
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Affiliation(s)
- Kai Wang
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
| | - Lei Shi
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
| | - Shuting Wang
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
| | - Taotao Wang
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
| | - Long Ma
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
| | - Wei Zheng
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
- Key Laboratory of Plant Nutrition and the Agri-Environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Xianyang, China
| | - Ziyan Li
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
- Key Laboratory of Plant Nutrition and the Agri-Environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Xianyang, China
| | - Zhaohui Wang
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China
- Key Laboratory of Plant Nutrition and the Agri-Environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Xianyang, China
| | - Bingnian Zhai
- College of Natural Resources and Environment, Northwest Agriculture & Forestry University, South Campus of Northwest A&F University, No. 3, Taicheng Road, Shaanxi, Yangling, Xianyang, China.
- Key Laboratory of Plant Nutrition and the Agri-Environment in Northwest China, Ministry of Agriculture, Yangling, 712100, Xianyang, China.
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15
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Duan C, Wang Y, Wang Q, Ju W, Zhang Z, Cui Y, Beiyuan J, Fan Q, Wei S, Li S, Fang L. Microbial metabolic limitation of rhizosphere under heavy metal stress: Evidence from soil ecoenzymatic stoichiometry. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 300:118978. [PMID: 35150803 DOI: 10.1016/j.envpol.2022.118978] [Citation(s) in RCA: 28] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Revised: 01/14/2022] [Accepted: 02/08/2022] [Indexed: 06/14/2023]
Abstract
Slow nutrient turnover and destructed soil function were the main factors causing low efficiency in phytoremediation of heavy metal (HM)-contaminated soil. Soil ecoenzymatic stoichiometry can reflect the ability of soil microorganisms to acquire energy and nutrients, and drive nutrient cycling and carbon (C) decomposition in HM-contaminated soil. Therefore, for the first time, we used the enzymatic stoichiometry modeling to examine the microbial nutrient limitation in rhizospheric and bulk soil of different plants (Medicago sativa, Halogeton arachnoideus and Agropyron cristatum) near the Baiyin Copper Mine. Results showed that the main pollutants in this area were Cu, Zn, Cd, and Pb, while Cd and Zn have the greatest contribution according to the analysis of pollution load index (PLI). The activities of soil C-, nitrogen (N)-, and phosphorus (P)-acquiring enzymes in the rhizosphere of plants were significantly greater than that in bulk soil. Moreover, microbial C and P limitations were observed in all plant treatments, while the lower limitation was generally in the rhizosphere compared to bulk soil. The HM stress significantly increased microbial C limitation and decreased microbial P limitation, especially in the rhizospheric soil. The partial least squares path modeling (PLS-PM) further indicated that HM concentration has the greatest effects on microbial P limitation (-0.64). In addition, the highest enzyme activities and the lowest P limitation were observed in the rhizospheric and bulk soil of M. sativa, thereby implying that soil microbial communities under the remediation of M. sativa were steadier and more efficient in terms of their metabolism. These findings are important for the elucidation of the nutrient cycling and microbial metabolism of rhizosphere under phytoremediation, and provide guidance for the restoration of HM-contaminated soil.
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Affiliation(s)
- Chengjiao Duan
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yuhan Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China
| | - Qiang Wang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China
| | - Wenliang Ju
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China; School of Environment, Tsinghua University, Beijing, 100084, China
| | - Zhiqin Zhang
- College of Natural Resources and Environment, Northwest A&F University, Yangling, 712100, China
| | - Yongxing Cui
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China; Sino-French Institute for Earth System Science, College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China
| | - Jingzi Beiyuan
- School of Environment and Chemical Engineering, Foshan University, Foshan, 528000, China
| | - Qiaohui Fan
- Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou, 730000, China
| | - Shiyong Wei
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China
| | - Shiqing Li
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China
| | - Linchuan Fang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation CAS and MWR, Yangling, 712100, China; CAS Center for Excellence in Quaternary Science and Global Change, Xi'an, 710061, China
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16
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Wang C, Jiao R. Adaptive Pathways of Microorganisms to Cope With the Shift From P- to N-Limitation in Subtropical Plantations. Front Microbiol 2022; 13:870667. [PMID: 35572659 PMCID: PMC9100944 DOI: 10.3389/fmicb.2022.870667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Accepted: 03/30/2022] [Indexed: 11/13/2022] Open
Abstract
Ecological stoichiometry is increasingly acknowledged as one of the main control factors for microbial activity and diversity. Soil carbon/nitrogen (C/N) and carbon/phosphorus (C/P) ratios are usually much higher than microbial nutrient requirements and vary with planting density and stand age in forestlands. However, how microorganisms cope with such stoichiometric imbalances and how they regulate nutrient cycling remain unclear. Here, 5- and 35-year-old experimental Cunninghamia lanceolata [Lamb.] Hook plantations with five planting densities (1,667, 3,333, 5,000, 6,667, and 10,000 stems ha−1) were used to explore the underlying mechanism of the response of microorganisms to stoichiometric imbalances. We found that (i) enzyme activity and microbial biomass and diversity increased with planting density at age 5 but decreased at age 35; (ii) soil microorganisms were P-limited at age 5, but gradually shifted from P- to N-limitation during the development of plantations from 5 to 35 years; and (iii) significantly negative relationships between microbial biomass stoichiometry and enzymatic stoichiometry were observed. The adaptive pathways of soil microorganisms to cope with stoichiometric imbalances include (i) adjusting the stoichiometry of microorganisms and enzymes; (ii) changing the relative abundance of the dominant microbial phyla; and (iii) increasing the ratio of fungal to bacterial diversity. These results highlight how to use the ecological stoichiometry method to identify soil microbial nutrient limitations with planting density during the development of plantations. By underlining the important role of stoichiometry on microbial growth and activity, these findings furthermore emphasize the dependency of organic matter transformation and nutrient cycling on the microbial community.
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Affiliation(s)
- Chaoqun Wang
- Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Chinese Academy of Forestry, Beijing, China
| | - Ruzhen Jiao
- Research Institute of Forestry, Chinese Academy of Forestry, Beijing, China
- State Key Laboratory of Tree Genetics and Breeding, Chinese Academy of Forestry, Beijing, China
- Key Laboratory of Tree Breeding and Cultivation of State Forestry Administration, Chinese Academy of Forestry, Beijing, China
- *Correspondence: Ruzhen Jiao
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17
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Xu M, Li W, Wang J, Zhu Y, Feng Y, Yang G, Zhang W, Han X. Soil ecoenzymatic stoichiometry reveals microbial phosphorus limitation after vegetation restoration on the Loess Plateau, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152918. [PMID: 34999061 DOI: 10.1016/j.scitotenv.2022.152918] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 12/29/2021] [Accepted: 01/01/2022] [Indexed: 06/14/2023]
Abstract
Exploring the limitations of soil microbial nutrient metabolism would help to understand the adaptability and response mechanisms of soil microbes in semi-arid ecosystems. Soil ecoenzymatic stoichiometry is conducive to quantifying the nutrient limitations of microorganisms. To quantify microbial nutrient limitation during plant restoration, we measured soil physicochemical properties, microbial biomass, and the activities of four enzymes (ꞵ-1,4-glucosidase, leucine aminopeptidase, ꞵ-1,4-N-acetylglucosaminidase, and alkaline phosphatase) in the soils of the northern Loess Plateau. Vegetation restoration patterns significantly affected soil properties, microbial biomass, enzymatic activity, and associated stoichiometry. Soil enzymatic activity increased significantly after vegetation restoration, especially in Robinia pseudoacacia plantations (RP). Correlation analysis showed that soil nutrients (C and N), moisture and pH were significantly correlated with ecoenzymatic activities and their stoichiometries. Vector-threshold element ratio (VT) model analysis revealed that microbial nutrient metabolism was limited by P, and soil microbial C limitation was significantly weakened after vegetation restoration, particularly in RP. Correlation analysis indicated that microbial nutrient limitations represented by the VT model were significantly correlated with soil moisture, nutrients, and associated stoichiometry. Therefore, the soil microbial community was mainly limited by P rather than N in vegetation restoration on the Loess Plateau via the VT model, and this limitation was primarily associated with the variation in soil properties. In addition, the soil microbial C limitation was significantly negatively correlated with microbial nutrient (P or N) limitation, which illustrated that soil microbial nutrient metabolism has strong stoichiometric homeostasis.
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Affiliation(s)
- Miaoping Xu
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Wenjie Li
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Jiayi Wang
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Yufan Zhu
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Yongzhong Feng
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Gaihe Yang
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China
| | - Wei Zhang
- College of Grassland Agriculture, Northwest A&F University, Yangling, 712100, Shaanxi, China.
| | - Xinhui Han
- College of Agronomy, Northwest A&F University, Yangling, 712100, Shaanxi, China; The Research Center of Recycle Agricultural Engineering and Technology of Shaanxi Province, Yangling, 712100, Shaanxi, China; Forest Ecosystem Positioning Research Station of Huanglong Mountain, Yan'an 716000, Shaanxi, China.
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18
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Frey B, Varliero G, Qi W, Stierli B, Walthert L, Brunner I. Shotgun Metagenomics of Deep Forest Soil Layers Show Evidence of Altered Microbial Genetic Potential for Biogeochemical Cycling. Front Microbiol 2022; 13:828977. [PMID: 35300488 PMCID: PMC8921678 DOI: 10.3389/fmicb.2022.828977] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 02/11/2022] [Indexed: 11/29/2022] Open
Abstract
Soil microorganisms such as Bacteria and Archaea play important roles in the biogeochemical cycling of soil nutrients, because they act as decomposers or are mutualistic or antagonistic symbionts, thereby influencing plant growth and health. In the present study, we investigated the vertical distribution of soil metagenomes to a depth of 1.5 m in Swiss forests of European beech and oak species on calcareous bedrock. We explored the functional genetic potential of soil microorganisms with the aim to disentangle the effects of tree genus and soil depth on the genetic repertoire, and to gain insight into the microbial C and N cycling. The relative abundance of reads assigned to taxa at the domain level indicated a 5–10 times greater abundance of Archaea in the deep soil, while Bacteria showed no change with soil depth. In the deep soil there was an overrepresentation of genes for carbohydrate-active enzymes, which are involved in the catalyzation of the transfer of oligosaccharides, as well as in the binding of carbohydrates such as chitin or cellulose. In addition, N-cycling genes (NCyc) involved in the degradation and synthesis of N compounds, in nitrification and denitrification, and in nitrate reduction were overrepresented in the deep soil. Consequently, our results indicate that N-transformation in the deep soil is affected by soil depth and that N is used not only for assimilation but also for energy conservation, thus indicating conditions of low oxygen in the deep soil. Using shotgun metagenomics, our study provides initial findings on soil microorganisms and their functional genetic potential, and how this may change depending on soil properties, which shift with increasing soil depth. Thus, our data provide novel, deeper insight into the “dark matter” of the soil.
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Affiliation(s)
- Beat Frey
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Gilda Varliero
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland.,Centre for Microbial Ecology and Genomics, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
| | - Weihong Qi
- Functional Genomics Center Zurich (FGCZ), ETH Zürich/University of Zurich, Zurich, Switzerland
| | - Beat Stierli
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Lorenz Walthert
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
| | - Ivano Brunner
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Birmensdorf, Switzerland
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19
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Cui J, Zhu R, Wang X, Xu X, Ai C, He P, Liang G, Zhou W, Zhu P. Effect of high soil C/N ratio and nitrogen limitation caused by the long-term combined organic-inorganic fertilization on the soil microbial community structure and its dominated SOC decomposition. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 303:114155. [PMID: 34861507 DOI: 10.1016/j.jenvman.2021.114155] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 10/20/2021] [Accepted: 11/23/2021] [Indexed: 06/13/2023]
Abstract
The application of organic fertilizers, such as straw and manure, is an efficient approach to maintain soil productivity. However, the effect of these organic fertilizers on soil microbial nutrient balance has not yet been established. In this study, the effects of the long-term combined organic-inorganic fertilization on microbial community were investigated by conducting a 30-year-long field test. Overall, the following five fertilizer groups were employed: inorganic NP fertilizer (NP), inorganic NK fertilizer (NK), inorganic NPK fertilizer (NPK), NPK + manure (MNPK), and NPK + straw (SNPK). The results indicated that the mean natural logarithm of the soil C:N:P acquisition enzyme ratio was 1.04:1.11:1.00 under organic-inorganic treatments, which showed a deviation from its overall mean ratio of 1:1:1. This indicates that microbial resources do not have a balance. Vector analysis (vector angle <45°) and threshold elemental ratio analysis (RC:N-TERC:N > 0) further demonstrated that the microbial metabolism was limited by Nitrogen (N) under SNPK and MNPK treatments. N limitation further influenced soil microbial community structure and its dominated SOC decomposition. Specifically, Microbial communities transformed into a more oligotrophic-dominant condition (fungal, Acidobacteria, Chloroflexi) from copiotrophic-dominant (Proteobacteria, Actinobacteria) condition with increasing N limitation. Lysobacter genus and Blastocatellaceae family, in the bacterial communities along with the Mortierella elongata species in fungal communities, were markedly associated with the N limitation, which could be the critical biomarker that represented N limitation. Both correlation analysis and partial least squares path modeling showed significant positive effects of N limitation on the ratio of bacterial functional genes (Cellulase/Amylase), involved in recalcitrant SOC degradation.
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Affiliation(s)
- Jiwen Cui
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Ruili Zhu
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Xiya Wang
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Xinpeng Xu
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Chao Ai
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Ping He
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Guoqing Liang
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China
| | - Wei Zhou
- Institute of Agricultural Resource and Regional Planning, Chinese Academy of Agricultural Sciences, Key Lab of Plant Nutrition and Fertilizer, Ministry of Agriculture, Beijing, 100081, PR China.
| | - Ping Zhu
- Jilin Academy of Agricultural Sciences, Gongzhuling, 130124, PR China.
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20
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Xue Y, Kang H, Cui Y, Lu S, Yang H, Zhu J, Fu Z, Yan C, Wang D. Consistent Plant and Microbe Nutrient Limitation Patterns During Natural Vegetation Restoration. FRONTIERS IN PLANT SCIENCE 2022; 13:885984. [PMID: 35665177 PMCID: PMC9161215 DOI: 10.3389/fpls.2022.885984] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2022] [Accepted: 03/23/2022] [Indexed: 05/06/2023]
Abstract
Vegetation restoration is assumed to enhance carbon (C) sequestration in terrestrial ecosystems, where plant producers and microbial decomposers play key roles in soil C cycling. However, it is not clear how the nutrient limitation patterns of plants and soil microbes might change during vegetation restoration. We investigated the nutrient limitations of the plant and microbial communities along a natural vegetation restoration chronosequence (1, 8, 16, 31, and 50 years) following farmland abandonment in Qinling Mountains, China, and assessed their relationships with soil factors. The result showed that following natural vegetation restoration, the nitrogen (N) limitation of plant and microbial communities was alleviated significantly, and thereafter, it began to shift to phosphorus (P) limitation at a later stage. Plants showed P limitation 50 years after restoration, while microbial P limitation appeared 31 years later. The changes in plant nutrient limitation were consistent with those in microbial nutrient limitation, but soil microbes were limited by P earlier than plants. Random forest model and partial least squares path modeling revealed that soil nutrient stoichiometry, especially soil C:N ratio, explained more variations in plant and microbial nutrient limitation. Our study demonstrates that the imbalanced soil C:N ratio may determine the soil microbial metabolic limitation and further mediate the variation in plant nutrient limitation during natural vegetation restoration, which provides important insights into the link between metabolic limitation for microbes and nutrient limitation for plants during vegetation restoration to improve our understanding of soil C turnover in temperate forest ecosystems.
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Affiliation(s)
- Yue Xue
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
- Key Laboratory of Forest Cultivation on the Loess Plateau, State Forestry and Grassland Administration, Yangling, China
| | - Haibin Kang
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
- Key Laboratory of Forest Cultivation on the Loess Plateau, State Forestry and Grassland Administration, Yangling, China
| | - Yongxing Cui
- College of Urban and Environmental Sciences, Sino-French Institute for Earth System Science, Peking University, Beijing, China
| | - Sheng Lu
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
| | - Hang Yang
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
| | - Jiaqi Zhu
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
| | - Zhenjie Fu
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
| | - Chenglong Yan
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
| | - Dexiang Wang
- College of Forestry, Northwest Agriculture & Forestry University, Yangling, China
- Key Laboratory of Forest Cultivation on the Loess Plateau, State Forestry and Grassland Administration, Yangling, China
- *Correspondence: Dexiang Wang,
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21
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Liu J, Kong W, Xia P, Zhu C, Li X. Prokaryotic Community Succession in Bulk and Rhizosphere Soils Along a High-Elevation Glacier Retreat Chronosequence on the Tibetan Plateau. Front Microbiol 2021; 12:736407. [PMID: 34690976 PMCID: PMC8531754 DOI: 10.3389/fmicb.2021.736407] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Accepted: 08/30/2021] [Indexed: 01/22/2023] Open
Abstract
Early colonization and succession of soil microbial communities are essential for soil development and nutrient accumulation. Herein we focused on the changes in pioneer prokaryotic communities in rhizosphere and bulk soils along the high-elevation glacier retreat chronosequence, the northern Himalayas, Tibetan Plateau. Rhizosphere soils showed substantially higher levels of total organic carbon, total nitrogen, ammonium, and nitrate than bulk soils. The dominant prokaryotes were Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi, Crenarchaeota, Bacteroidetes, and Planctomycetes, which totally accounted for more than 75% in relative abundance. The dominant genus Candidatus Nitrososphaera occurred at each stage of the microbial succession. The richness and evenness of soil prokaryotes displayed mild succession along chronosequene. Linear discriminant analysis effect size (LEfSe) analysis demonstrated that Proteobacteria (especially Alphaproteobacteria) and Actinobacteria were significantly enriched in rhizosphere soils compared with bulk soils. Actinobacteria, SHA_109, and Thermoleophilia; Betaproteobacteria and OP1.MSBL6; and Planctomycetia and Verrucomicrobia were separately enriched at each of the three sample sites. The compositions of prokaryotic communities were substantially changed with bulk and rhizosphere soils and sampling sites, indicating that the communities were dominantly driven by plants and habitat-specific effects in the deglaciated soils. Additionally, the distance to the glacier terminus also played a significant role in driving the change of prokaryotic communities in both bulk and rhizosphere soils. Soil C/N ratio exhibited a greater effect on prokaryotic communities in bulk soils than rhizosphere soils. These results indicate that plants, habitat, and glacier retreat chronosequence collectively control prokaryotic community composition and succession.
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Affiliation(s)
- Jinbo Liu
- Department of Hepatobiliary Surgery, The Affiliated Hospital of Southwest Medical University, Luzhou, China.,Academician (Expert) Workstation of Sichuan Province, The Affiliated Hospital of Southwest Medical University, Luzhou, China.,Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| | - Weidong Kong
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| | - Pinhua Xia
- Guizhou Key Laboratory for Mountainous Environmental Information and Ecological Protection, Guizhou Normal University, Guiyang, China
| | - Chunmao Zhu
- Research Institute for Global Change, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Yokohama, Japan
| | - Xiangzhen Li
- Key Laboratory of Environmental and Applied Microbiology, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, China
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22
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Varliero G, Anesio AM, Barker GLA. A Taxon-Wise Insight Into Rock Weathering and Nitrogen Fixation Functional Profiles of Proglacial Systems. Front Microbiol 2021; 12:627437. [PMID: 34621246 PMCID: PMC8491546 DOI: 10.3389/fmicb.2021.627437] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Accepted: 08/05/2021] [Indexed: 11/13/2022] Open
Abstract
The Arctic environment is particularly affected by global warming, and a clear trend of the ice retreat is observed worldwide. In proglacial systems, the newly exposed terrain represents different environmental and nutrient conditions compared to later soil stages. Therefore, proglacial systems show several environmental gradients along the soil succession where microorganisms are active protagonists of the soil and carbon pool formation through nitrogen fixation and rock weathering. We studied the microbial succession of three Arctic proglacial systems located in Svalbard (Midtre Lovénbreen), Sweden (Storglaciären), and Greenland (foreland close to Kangerlussuaq). We analyzed 65 whole shotgun metagenomic soil samples for a total of more than 400 Gb of sequencing data. Microbial succession showed common trends typical of proglacial systems with increasing diversity observed along the forefield chronosequence. Microbial trends were explained by the distance from the ice edge in the Midtre Lovénbreen and Storglaciären forefields and by total nitrogen (TN) and total organic carbon (TOC) in the Greenland proglacial system. Furthermore, we focused specifically on genes associated with nitrogen fixation and biotic rock weathering processes, such as nitrogenase genes, obcA genes, and genes involved in cyanide and siderophore synthesis and transport. Whereas we confirmed the presence of these genes in known nitrogen-fixing and/or rock weathering organisms (e.g., Nostoc, Burkholderia), in this study, we also detected organisms that, even if often found in soil and proglacial systems, have never been related to nitrogen-fixing or rock weathering processes before (e.g., Fimbriiglobus, Streptomyces). The different genera showed different gene trends within and among the studied systems, indicating a community constituted by a plurality of organisms involved in nitrogen fixation and biotic rock weathering, and where the latter were driven by different organisms at different soil succession stages.
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Affiliation(s)
- Gilda Varliero
- School of Biological Sciences, University of Bristol, Bristol, United Kingdom
| | | | - Gary L. A. Barker
- School of Biological Sciences, University of Bristol, Bristol, United Kingdom
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23
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Effects of Canada Goldenrod Invasion on Soil Extracellular Enzyme Activities and Ecoenzymatic Stoichiometry. SUSTAINABILITY 2021. [DOI: 10.3390/su13073768] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
The rapid expansion of Canada goldenrod (Solidago canadensis L.) in China has drawn considerable attention as it may not only decrease vegetation diversity but also alter soil nutrient cycling in the affected ecosystems. Soil extracellular enzymes mediate nutrient cycling by catalyzing the organic matter decomposition; however, the mechanisms by which alien plant invasion may affect soil extracellular enzymes remain unclear. The objective of this study was to investigate the responses of soil extracellular enzyme activities and ecoenzymatic stoichiometry to S. canadensis invasion. Several extracellular enzymatic activities related to carbon, nitrogen, and phosphorus cycling were measured using a fluorometric method. Ecoenzymatic stoichiometry was used as a proxy of soil microbial metabolic limitations. S. canadensis invasion appeared to be associated with decreased activities of enzymes and with substantial conversions of microbial metabolic carbon and nitrogen limitations. The changes in the activities of extracellular enzymes and the limitations of microbial metabolism were correlated with the alterations in the nutrient availability and resource stoichiometry in the soil. These findings reveal that the alterations in soil available nutrients associated with S. canadensis invasion may regulate extracellular enzymatic activities and cause microbial metabolic limitations, suggesting that S. canadensis invasion considerably affects biogeochemical cycling processes.
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24
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Guan P, Yang J, Yang Y, Wang W, Zhang P, Wu D. Land conversion from cropland to grassland alleviates climate warming effects on nutrient limitation: Evidence from soil enzymatic activity and stoichiometry. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e01328] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022] Open
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