Drone-based imaging to assess the microbial water quality in an irrigation pond: A pilot study

Using machine learning models to estimate Escherichia coli concentration in an irrigation pond from water quality and drone-based RGB imagery data

The rapid and efficient quantification of Escherichia coli concentrations is crucial for monitoring water quality. Remote sensing techniques and machine learning algorithms have been used to detect E. coli in water and estimate its concentrations. The application of these approaches, however, is challenged by limited sample availability and unbalanced water quality datasets. In this study, we estimated the E. coli concentration in an irrigation pond in Maryland, USA, during the summer season using demosaiced natural color (red, green, and blue: RGB) imagery in the visible and infrared spectral ranges, and a set of 14 water quality parameters. We did this by deploying four machine learning models - Random Forest (RF), Gradient Boosting Machine (GBM), Extreme Gradient Boosting (XGB), and K-nearest Neighbor (KNN) - under three data utilization scenarios: water quality parameters only, combined water quality and small unmanned aircraft system (sUAS)-based RGB data, and RGB data only. To select the training and test datasets, we applied two data-splitting methods: ordinary and quantile data splitting. These methods provided a constant splitting ratio in each decile of the E. coli concentration distribution. Quantile data splitting resulted in better model performance metrics and smaller differences between the metrics for both the training and testing datasets. When trained with quantile data splitting after hyperparameter optimization, models RF, GBM, and XGB had R2 values above 0.847 for the training dataset and above 0.689 for the test dataset. The combination of water quality and RGB imagery data resulted in a higher R2 value (>0.896) for the test dataset. Shapley additive explanations (SHAP) of the relative importance of variables revealed that the visible blue spectrum intensity and water temperature were the most influential parameters in the RF model. Demosaiced RGB imagery served as a useful predictor of E. coli concentration in the studied irrigation pond.

Using multispectral drones to predict water quality in a subtropical estuary

Drones are revolutionising earth system observations, and are increasingly used for high resolution monitoring of water quality. The objective of this research was to test whether drone-based multispectral imagery could predict important water quality parameters in an ICOLL (intermittently closed and opened lake or lagoon). Three water quality sampling campaigns were undertaken, measuring temperature, salinity, pH, dissolved oxygen (DO), chlorophyll (CHL), turbidity, total suspended sediments (TSS), coloured dissolved organic matter (CDOM), green algae, crytophyta, diatoms, bluegreen algae and total algal concentrations. DistilM statistical analyses were conducted to reveal the bands accounting for the most variation across all water quality data, then linear correlations between specific band/band ratios and individual water quality parameters were performed. DistilM analyses revealed the NIR band accounted for most variation in March, the Green band in April and the RE band in May, and showed that the most important contributors varied significantly among campaigns and variables. Significant linear correlations with R2 > 0.4 were obtained for eleven of the water quality parameters tested, with the strongest correlation obtained for CHL and the green band (R2 = 0.72). The relative importance of predictor bands and observed water quality parameters varied temporally. We conclude that drones with a multispectral sensor can produce useful 'snapshot' prediction maps for a range of water quality parameters, such as chlorophyll, bluegreen algae and dissolved oxygen. However, a single model was insufficient to reproduce the temporal variation of water parameters in dynamic estuarine systems.

Effective coastal Escherichia coli monitoring by unmanned aerial vehicles (UAV) thermal infrared images

Coastal Escherichia coli (E. coli) significantly influence ocean safety and public health, thus requiring an effective E. coli pollution monitoring. However conventional detection relying on manual field sampling is time-consuming. Here, this study established an E. coli estimation model based on thermal remote sensing of unmanned aerial vehicles (UAV). This model was developed against one-year comprehensive field work in a representative sandy beach and further validated against 50 beaches in Hong Kong to evaluate its applicability. The estimated E. coli concentrations were in a reliable agreement with direct measurements. For this model, this study deployed the radon-222 (²²²Rn) as a bridging tracer to couple UAV thermal images and coastal E. coli concentrations. Coastal ²²²Rn can be reflected on the UAV thermal images, and there was a good positive correlation between the ²²²Rn activity and coastal E. coli concentration via one-year field data. Hence, coupling the ²²²Rn activity estimated from UAV thermal images and the relationship between ²²²Rn and E. coli, this study can readily monitor coastal E. coli by UAV. These findings highlighted that UAV technology is an effective approach to measure the E. coli concentrations and can further pave the way for an efficient coastal E. coli monitoring and public health risk warning.

Toward Integrated Large-Scale Environmental Monitoring Using WSN/UAV/Crowdsensing: A Review of Applications, Signal Processing, and Future Perspectives

Fighting Earth's degradation and safeguarding the environment are subjects of topical interest and sources of hot debate in today's society. According to the United Nations, there is a compelling need to take immediate actions worldwide and to implement large-scale monitoring policies aimed at counteracting the unprecedented levels of air, land, and water pollution. This requires going beyond the legacy technologies currently employed by government authorities and adopting more advanced systems that guarantee a continuous and pervasive monitoring of the environment in all its different aspects. In this paper, we take the research on integrated and large-scale environmental monitoring a step further by providing a comprehensive review that covers transversally all the main applications of wireless sensor networks (WSNs), unmanned aerial vehicles (UAVs), and crowdsensing monitoring technologies. By outlining the available solutions and current limitations, we identify in the cooperation among terrestrial (WSN/crowdsensing) and aerial (UAVs) sensing, coupled with the adoption of advanced signal processing techniques, the major pillars at the basis of future integrated (air, land, and water) and large-scale environmental monitoring systems. This review not only consolidates the progresses achieved in the field of environmental monitoring, but also sheds new lights on potential future research directions and synergies among different research areas.

Interactions of E. coli with algae and aquatic vegetation in natural waters

Both algae and bacteria are essential inhabitants of surface waters. Their presence is of ecological significance and sometimes of public health concern triggering various control actions. Interactions of microalgae, macroalgae, submerged aquatic vegetation, and bacteria appear to be important phenomena necessitating a deeper understanding by those involved in research and management of microbial water quality. Given the long-standing reliance on Escherichia coli as an indicator of the potential presence of pathogens in natural waters, understanding its biology in aquatic systems is necessary. The major effects of algae and aquatic vegetation on E. coli growth and survival, including changes in the nutrient supply, modification of water properties and constituents, impact on sunlight radiation penetration, survival as related to substrate attachment, algal mediation of secondary habitats, and survival inhibition due to the release of toxic substances and antibiotics, are discussed in this review. An examination of horizontal gene transfer and antibiotic resistance potential, strain-specific interactions, effects on the microbial, microalgae, and grazer community structure, and hydrodynamic controls is given. Outlooks due to existing and expected consequences of climate change and advances in observation technologies via high-resolution satellite imaging, unmanned aerial vehicles (drones), and mathematical modeling are additionally covered. The multiplicity of interactions among bacteria, algae, and aquatic vegetation as well as multifaceted impacts of these interactions, create a wide spectrum of research opportunities and technology developments.

UAV-Borne Hyperspectral Imaging Remote Sensing System Based on Acousto-Optic Tunable Filter for Water Quality Monitoring

Unmanned aerial vehicle (UAV) hyperspectral remote sensing technologies have unique advantages in high-precision quantitative analysis of non-contact water surface source concentration. Improving the accuracy of non-point source detection is a difficult engineering problem. To facilitate water surface remote sensing, imaging, and spectral analysis activities, a UAV-based hyperspectral imaging remote sensing system was designed. Its prototype was built, and laboratory calibration and a joint air–ground water quality monitoring activity were performed. The hyperspectral imaging remote sensing system of UAV comprised a light and small UAV platform, spectral scanning hyperspectral imager, and data acquisition and control unit. The spectral principle of the hyperspectral imager is based on the new high-performance acousto-optic tunable (AOTF) technology. During laboratory calibration, the spectral calibration of the imaging spectrometer and image preprocessing in data acquisition were completed. In the UAV air–ground joint experiment, combined with the typical water bodies of the Yangtze River mainstream, the Three Gorges demonstration area, and the Poyang Lake demonstration area, the hyperspectral data cubes of the corresponding water areas were obtained, and geometric registration was completed. Thus, a large field-of-view mosaic and water radiation calibration were realized. A chlorophyl-a (Chl-a) sensor was used to test the actual water control points, and 11 traditional Chl-a sensitive spectrum selection algorithms were analyzed and compared. A random forest algorithm was used to establish a prediction model of water surface spectral reflectance and water quality parameter concentration. Compared with the back propagation neural network, partial least squares, and PSO-LSSVM algorithms, the accuracy of the RF algorithm in predicting Chl-a was significantly improved. The determination coefficient of the training samples was 0.84; root mean square error, 3.19 μg/L; and mean absolute percentage error, 5.46%. The established Chl-a inversion model was applied to UAV hyperspectral remote sensing images. The predicted Chl-a distribution agreed with the field observation results, indicating that the UAV-borne hyperspectral remote sensing water quality monitoring system based on AOTF is a promising remote sensing imaging spectral analysis tool for water.

A Novel Index to Detect Vegetation in Urban Areas Using UAV-Based Multispectral Images

Unmanned aerial vehicles (UAVs) equipped with high-resolution multispectral cameras have increasingly been used in urban planning, landscape management, and environmental monitoring as an important complement to traditional satellite remote sensing systems. Interest in urban regeneration projects is on the rise in Korea, and the results of UAV-based urban vegetation analysis are in the spotlight as important data to effectively promote urban regeneration projects. Vegetation indices have been used to obtain vegetation information in a wide area using the multispectral bands of satellites. UAV images have recently been used to obtain vegetation information in a more rapid and precise manner. In this study, multispectral images were acquired using a UAV equipped with a Micasense RedEde MX camera to analyze vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), Green Normalized Difference Vegetation Index (GNDVI), Blue Normalized Difference Vegetation Index (BNDVI), Red Green Blue Vegetation Index (RGBVI), Green Red Vegetation Index (GRVI), and Soil Adjusted Vegetation Index (SAVI). However, in the process of analyzing urban vegetation using the existing vegetation indices, it became clear that the vegetation index values of long-run steel roofing, waterproof coated roofs, and urethane-coated areas are often similar to, or slightly higher than, those of grass. In order to improve the problem of misclassification of vegetation, various equations were tested by combining multispectral bands. Kappa coefficient analysis showed that the squared Red-Blue NDVI index produced the best results when analyzing vegetation reflecting urban land cover. The novel vegetation index developed in this study will be very useful for effective analysis of vegetation in urban areas with various types of land cover, such as long-run steel roofing, waterproof coated roofs, and urethane-coated areas.

Numerical Modeling of Microbial Fate and Transport in Natural Waters: Review and Implications for Normal and Extreme Storm Events

Degradation of water quality in recreational areas can be a substantial public health concern. Models can help beach managers make contemporaneous decisions to protect public health at recreational areas, via the use of microbial fate and transport simulation. Approaches to modeling microbial fate and transport vary widely in response to local hydrometeorological contexts, but many parameterizations include terms for base mortality, solar inactivation, and sedimentation of microbial contaminants. Models using these parameterizations can predict up to 87% of variation in observed microbial concentrations in nearshore water, with root mean squared errors ranging from 0.41 to 5.37 log10 Colony Forming Units (CFU) 100 mL−1. This indicates that some models predict microbial fate and transport more reliably than others and that there remains room for model improvement across the board. Model refinement will be integral to microbial fate and transport simulation in the face of less readily observable processes affecting water quality in nearshore areas. Management of contamination phenomena such as the release of storm-associated river plumes and the exchange of contaminants between water and sand at the beach can benefit greatly from optimized fate and transport modeling in the absence of directly observable data.