Effects of natural and anthropogenic changes on testate amoebae communities in an alpine lake over the past 2500 years

Interactions of hydrology, geochemistry, and biodiversity in woodland ponds located in riverine floodplains: case study from Scotland

The Gore Glen pond is located in the forested floodplain of the Gore River, in the Mid-Lothian region near Edinburgh, Scotland. This work has considered in detail the hydrology, hydrochemistry, and biodiversity of the pond together with all their interactions and in addition interactions with the adjacent Gore River. It is important as it is one of few studies considering all these issues for a pond located in a riverine floodplain. This work shows the pond is connected to the Gore River for discharge events in the river larger than a 1 in 5-year return period. For these events, the pond acts as an online storage feature and will attenuate the flow, thus contributing towards the mitigation of downstream flooding. These large events are also a potential source of the large amount of sediments, as well as adsorbed chemicals, accumulated in the pond. The open water surface of the pond is covered by duckweed, Lemna minor, for most of the year, and that has profound implications for the hydrobiological community and biogeochemical cycling. The system is characterised by nutrient release from sediments due to the extensive hypolimnion anoxia in the summer/autumn period caused by the decomposition of organic matter. Algae are mostly represented by epiphytic diatoms and the cyanobacterium Microcystis, but their development appears to be constrained by light penetration. The eutrophic conditions are also conducive for the population of Difflugia (Protozoa, Rhizopoda). This work improves our understanding of the ecological relations of testate amoebae-an important group which has recently been used as biological indicators for the analysis of paleoecological relationships and paleogeographical reconstructions.

Deciphering the diversity patterns and community assembly of rare and abundant bacterial communities in a wetland system

Water microorganisms that have distinct contributions to community dynamics, including many rare taxa and few abundant taxa, are crucial to the wetland ecosystem functions. In this study, we comprehensively investigated the diversity patterns and assembly processes of rare and abundant taxa to strengthen our understanding of ecosystem function and diversity in a wetland system. The results showed that TN and NH₃-N were the most significant factors affecting the community structure in this wetland. Functional Annotation of Prokaryotic Taxa (FAPROTAX) revealed that functions associated with nitrogen removal were the most prevalent metabolic pathways in samples of regenerated wetland (RW). Co-occurrence network analysis revealed that nonrare taxa exhibited more interactions with rare taxa than with conspecifics and some microbial hubs belonged to rare taxa, which might play an instrumental role in maintaining the stability of the community structure. We found that the assembly of rare taxa with a lower niche breadth was mainly governed by homogeneous selection, implying that their higher sensitivity of these to environmental disturbances and changes in TN played significant roles in community assembly of rare taxa. In contrast, the assembly of abundant taxa with higher niche breadth was dominated by stochastic processes (undominated process and dispersal limitation) indicating that abundant taxa had greater responsibility for maintaining community structure when exposed to environmental fluctuations. These results broaden our understanding of the microbial structure, interactions and ecological assembly mechanisms underlying microbial dynamics in aquatic ecosystems, which are crucial for the management of microorganisms in the wetlands.

Testate amoebae: a review on their multiple uses as bioindicators

Testate amoebae (TA) are unicellular protozoans enclosed in a test capable of indicating a wide variety of environmental conditions. Among others, characteristics such as short life cycle, great sensitivity and worldwide distribution makes them adequate bioindicators. As a complement to physical and chemical measurements, biomonitoring can be a cheaper and fastest way of environmental monitoring. This research sought to evaluate the extent of TA use in biomonitoring and the responses given by them to environmental features. The research was conducted in Scielo, Science Direct, Online Library, Google Scholar and Capes Journal Portal and yielded 211 papers. TA bioindication is able to provide information on metal, trace element and atmospheric pollution, and to point out different trophic states, pH, and evidence on characteristics of hydrology. Further, TA can be used in paleoenvironmental reconstruction as they reflect climate, volcanic and even sea level change phenomena. Sometimes, together with other organisms in environmental analysis, they have shown to be an important complement to biomonitoring. Additionally, a functional traits approach has been recently included as a promising tool. Methodological adjustments that have been conducted throughout the years are allowing TA use to be more reliable and precise. This review provides insight on the many possible functions of TA in bioindication studies, highlighting their wide use as bioindicators.

Decade-scale change in testate amoebae community primarily driven by anthropogenic disturbance than natural change in a large subtropical reservoir

Understanding the extent of human activities leading to an influx of chemical pollutants that cause substantial environmental transformations is the focus of much ongoing research. In this study, we present a multi-proxy record based on a sediment core from a large subtropical reservoir (Xinfengjiang Reservoir) in south China with an emphasis on the changes in testate amoebae community, in combination with sedimentological (radioactivity, physicochemistry, nutrient and organochlorine pesticides) and climatological (air temperature and precipitation) data over the last three decades. Twenty-seven testate amoebae species belonging to seven genera (Arcella, Centropyxis, Cyclopyxis, Difflugia, Netzelia, Euglypha and Pseudodifflugia) were observed. Species richness, abundance and biomass of testate amoebae were in ranges of 18-26 species, 616-825 ind. ml^-1 and 9.0-19.4 μg C ml^-1, respectively. Two development stages of the reservoir, dated to 1978-1993 (stage 1) and 1993-2006 (stage 2), were distinguished based on testate amoebae communities. Stage 1 was characterized by elevated dry bulk density, carbon-to‑nitrogen ratio and p,p'-DDE in the sediment core and an impact of nitrogen and sulfur deficiency on testate amoebae. Stage 2 was marked by a decrease of dry bulk density, elevated concentrations of aluminum, iron and carbon, low carbon-to‑nitrogen ratio and organochlorine pesticides, fluctuations in rainfall on shorter and yearly timescales, and a stronger influence of the organochlorine pesticides on testate amoebae. Testate amoebae community change and the identified two-stage development were consistent with atmospheric deposition of organochlorine pesticides from anthropogenic sources inside and outside the reservoir watershed, nutrient influx and sediment physicochemistry. The testate amoebae community dynamics and a strong community-environment relationship in stage 2 were linked with non-random patterns in the biotic neighborhoods of species (deterministic processes). The results suggest a stronger impact of anthropogenic disturbance than natural environmental change on testate amoebae community variation of Xinfengjiang Reservoir over time.

Responses of abundant and rare bacterioplankton to temporal change in a subtropical urban reservoir

Investigation of bacterial community dynamics across different time scales is important for understanding how environmental conditions drive community change over time. Bacterioplankton from the surface waters of a subtropical urban reservoir in southeast China were analyzed through high-frequency sampling over 13 months to compare patterns and ecological processes between short (0‒8 weeks), medium (9‒24 weeks) and long (25‒53 weeks) time intervals. We classified the bacterial community into different subcommunities: abundant taxa (AT); conditionally rare taxa (CRT); rare taxa (RT). CRT contributed > 65% of the alpha-diversity, and temporal change of beta-diversities was more pronounced for AT and CRT than RT. The bacterial community exhibited a directional change in the short- and medium-time intervals and a convergent dynamic during the long-time interval due to a seasonal cycle. Cyanobacteria exhibited a strong succession pattern than other phyla. CRT accounted for > 76% of the network nodes in three stations. The bacteria-environment relationship and deterministic processes were stronger for large sample size at station G (n = 116) than small sample size at stations C (n = 12) and L (n = 22). These findings suggest that a high-frequency sampling approach can provide a better understanding on the time scales at which bacterioplankton can change fast between being abundant or rare, thus providing the facts about environmental factors driving microbial community dynamics. Patterns and processes in alpha- and beta-diversities and community assembly of bacterioplankton differ among different time intervals (short-, medium- and long-time intervals) and different subcommunities (abundant, conditionally rare and rare taxa) in a subtropical urban reservoir, demonstrating the importance of temporal scale and high-frequency sampling in microbial community ecology.