1
|
Belykh E, Maystrenko T, Velegzhaninov I, Tavleeva M, Rasova E, Rybak A. Taxonomic Diversity and Functional Traits of Soil Bacterial Communities under Radioactive Contamination: A Review. Microorganisms 2024; 12:733. [PMID: 38674676 PMCID: PMC11051952 DOI: 10.3390/microorganisms12040733] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 03/28/2024] [Accepted: 04/01/2024] [Indexed: 04/28/2024] Open
Abstract
Studies investigating the taxonomic diversity and structure of soil bacteria in areas with enhanced radioactive backgrounds have been ongoing for three decades. An analysis of data published from 1996 to 2024 reveals changes in the taxonomic structure of radioactively contaminated soils compared to the reference, showing that these changes are not exclusively dependent on contamination rates or pollutant compositions. High levels of radioactive exposure from external irradiation and a high radionuclide content lead to a decrease in the alpha diversity of soil bacterial communities, both in laboratory settings and environmental conditions. The effects of low or moderate exposure are not consistently pronounced or unidirectional. Functional differences among taxonomic groups that dominate in contaminated soil indicate a variety of adaptation strategies. Bacteria identified as multiple-stress tolerant; exhibiting tolerance to metals and antibiotics; producing antioxidant enzymes, low-molecular antioxidants, and radioprotectors; participating in redox reactions; and possessing thermophilic characteristics play a significant role. Changes in the taxonomic and functional structure, resulting from increased soil radionuclide content, are influenced by the combined effects of ionizing radiation, the chemical toxicity of radionuclides and co-contaminants, as well as the physical and chemical properties of the soil and the initial bacterial community composition. Currently, the quantification of the differential contributions of these factors based on the existing published studies presents a challenge.
Collapse
Affiliation(s)
- Elena Belykh
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
| | - Tatiana Maystrenko
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
| | - Ilya Velegzhaninov
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
| | - Marina Tavleeva
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
- Department of Biology, Institute of Natural Sciences, Pitirim Sorokin Syktyvkar State University, 55 Oktyabrsky Prospekt, Syktyvkar 167001, Russia
| | - Elena Rasova
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
| | - Anna Rybak
- Institute of Biology of Komi Scientific Centre, Ural Branch of Russian Academy of Sciences, 28 Kommunisticheskaya St., Syktyvkar 167982, Russia (I.V.); (E.R.)
| |
Collapse
|
2
|
Maystrenko T, Rybak A. Radiation exposure and risk assessment to earthworms in areas contaminated with naturally occurring radionuclides. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:706. [PMID: 36001168 DOI: 10.1007/s10661-022-10382-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2022] [Accepted: 08/11/2022] [Indexed: 06/15/2023]
Abstract
The assessment of radiation exposure on biota is one of the main parts of environment protection system. Earthworms have been recognized as an important organism group in the terrestrial ecosystems. According to many researchers the potential risks of naturally occurring radionuclides for soil invertebrates were not significant because the exposure doses to the invertebrate populations were low. Our study aimed to assess the radiation exposure and the radiological risks from naturally occurring radionuclides for earthworm populations at four sites. This research was based on three dosimetric approaches simultaneously: ERICA and RESRAD-BIOTA-the commonly used ones, and also on the original method proposed by Thomas and Liber (Environment International, 27, 341-353, 2001) for aquatic organisms. To calculate radiation dose rates to soil invertebrates inhabiting background and contaminated areas, the specific activities of radionuclides in soil, and, depending on the model, the default, or determined in this study, input mass-geometric parameters had been applied. The weighted absorbed dose rates calculated by different models and site-specific data were 0.3-1.4 μGy/h for the background and from 3.4 to 170 μGy/h for the contaminated sites. Analysis of radiation risks for earthworms indicated that 226Ra was the key contributor to the external dose rate; 226Ra and 210Po played a dominant role in formation of internal dose rate for radioecological situations in our study. More conservative radiation risk assessments were derived from RESRAD-BIOTA tool. Dose assessments obtained using various models had shown that there are real environmental situations in which the radiological risks to reference organisms are significantly higher than the lowest benchmark protection level proposed for ecosystems.
Collapse
Affiliation(s)
- Tatiana Maystrenko
- Institute of Biology, Komi Scientific Center of Ural Branch of RAS, Syktyvkar, Russia.
| | - Anna Rybak
- Institute of Biology, Komi Scientific Center of Ural Branch of RAS, Syktyvkar, Russia
| |
Collapse
|
3
|
Jaskulak M, Rorat A, Vandenbulcke F, Pauwels M, Grzmil P, Plytycz B. Polymorphic microsatellite markers demonstrate hybridization and interspecific gene flow between lumbricid earthworm species, Eisenia andrei and E. fetida. PLoS One 2022; 17:e0262493. [PMID: 35180227 PMCID: PMC8856553 DOI: 10.1371/journal.pone.0262493] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 12/27/2021] [Indexed: 11/18/2022] Open
Abstract
The lumbricid earthworms Eisenia andrei (Ea) and E. fetida (Ef) have been used as model organisms for studies on hybridization. Previously they have been identified by species specific sequences of the mitochondrial COI gene of maternal origin ('a' or 'f') and the nuclear 28S gene of maternal/paternal origin ('A' or 'F'). In experimental crosses, these hermaphroditic species produce progeny of genotypes Ea (aAA), Ef (fFF) and hybrids (aAF and fFA) originating by self-fertilization or cross-fertilization. To facilitate studies on new aspects of the breeding biology and hybridization of earthworms, polymorphic microsatellite markers were developed based on 12 Ea and 12 Ef specimens and validated on DNA samples extracted from 24 genotyped specimens (aAA, fFF, aAF and fFA) from three laboratory-raised families and 10 of them were applied in the present study. The results indicate that microsatellite markers are valuable tools for tracking interspecific gene flow between these species.
Collapse
Affiliation(s)
- Marta Jaskulak
- Laboratoire de Génie Civil et géo-Environnement, Univ. Lille, IMT Lille Douai, Univ. Artois, Yncrea Hauts-de-France, ULR4515—LGCgE, Lille, France
- Department of Immunobiology and Environment Microbiology, Faculty of Health Sciences with Institute of Maritime and Tropical Medicine, Medical University of Gdansk, Gdansk, Poland
| | - Agnieszka Rorat
- Laboratoire de Génie Civil et géo-Environnement, Univ. Lille, IMT Lille Douai, Univ. Artois, Yncrea Hauts-de-France, ULR4515—LGCgE, Lille, France
| | - Franck Vandenbulcke
- Laboratoire de Génie Civil et géo-Environnement, Univ. Lille, IMT Lille Douai, Univ. Artois, Yncrea Hauts-de-France, ULR4515—LGCgE, Lille, France
| | - Maxime Pauwels
- Laboratoire de Génie Civil et géo-Environnement, Univ. Lille, IMT Lille Douai, Univ. Artois, Yncrea Hauts-de-France, ULR4515—LGCgE, Lille, France
- Univ. Lille, CNRS, UMR 8198 - EEP - Laboratoire Evolution Ecologie Paléontologie F-59000 Lille, France
| | - Paweł Grzmil
- Laboratory of Genetics and Evolutionism, Institute of Zoology and Biomedical Research, Jagiellonian University, Krakow, Poland
| | - Barbara Plytycz
- Department of Evolutionary Immunology, Institute of Zoology and Biomedical Research, Jagiellonian University, Krakow, Poland
| |
Collapse
|
4
|
Antonova EV, Röder MS. Evaluation of the genetic structure of Bromus inermis populations from chemically and radioactively polluted areas using microsatellite markers from closely related species. Int J Radiat Biol 2021; 98:1289-1300. [PMID: 34855571 DOI: 10.1080/09553002.2022.2013569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
Hypothesis The ecotoxicological and radiobiological effects can be manifested in a decrease in genetic diversity with an increase in toxic and radiation load, in an increase in the frequencies of rare and/or unique (private) alleles in impact samples, and in a decrease in the differentiation of B. inermis populations within each pollution area.Materials and methods We have selected a collection of primers for Bromus inermis, consisting of 21 microsatellite (SSR) loci from B. sterilis, B. tectorum and Triticum aestivum. The level of toxic load (chemically polluted area) was 4-19 conventional units, and the absorbed dose rate (the Kyshtym accident area) varied from 0.153 to 21.5 μGy h-1, which is up to two orders higher than the natural background radiation level (≈ 0.1 μGy h-1).Results Only eight of 21 (38%) of SSR primers showed good transferability and were used for B. inermis population studies from areas of technogenic pollution (heavy metals and radionuclides). We revealed 42 alleles at eight loci, and the number of alleles per locus varied from one to 13 in B. inermis populations. The percentage of polymorphic loci in B. inermis populations was 48.44%, the polymorphism information content (PIC) value was 0.556, and Shannon information index was 0.69 ± 0.3. A total of 22 rare, 14 private and 9 both rare and private alleles were reported for all B. inermis populations. There were no correlations between geographic and genetic distances. Only 6.8% of the genetic variability was distributed among B. inermis populations.Conclusion There was no decrease in genetic diversity ("genetic erosion") found in B. inermis populations growing for a long time under anthropogenic stress. No significant differences in the number of rare and private alleles in the background and impact populations of B. inermis were found. The smooth brome is characterized by low differentiation of the populations. Possible reasons for this phenomenon are discussed.
Collapse
Affiliation(s)
- Elena V Antonova
- Laboratory of Population Radiobiology, Institute of Plant & Animal Ecology, Ural Branch of the Russian Academy of Sciences, 8 Marta str. 202, Ekaterinburg 620144, Russia
| | - Marion S Röder
- Group of Gene and Genome Mapping, Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstr. 3, Stadt Seeland OT Gatersleben 06466, Germany
| |
Collapse
|
5
|
Huang C, Ge Y, Yue S, Qiao Y, Liu L. Impact of soil metals on earthworm communities from the perspectives of earthworm ecotypes and metal bioaccumulation. JOURNAL OF HAZARDOUS MATERIALS 2021; 406:124738. [PMID: 33316673 DOI: 10.1016/j.jhazmat.2020.124738] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 11/28/2020] [Accepted: 11/28/2020] [Indexed: 06/12/2023]
Abstract
The current study elucidates the impact of soil metal contamination on earthworm communities at the ecotype level. A total of 292 earthworms belonging to 13 species were collected in metal-contaminated soils from Wanshou (WSC), Daxing (DXC) and Lupu (LPC) plots (1.40-6.60, 29.4-126, 251-336 and 91.9-109 mg/kg for soil Cd, Cu, Zn and Pb, respectively) in Hunan Province, southern China. The results showed that the total earthworm density and biomass significantly decreased along the increasing metal-contaminated gradient while epigeic earthworms became more dominant than anecic and endogeic earthworms. Redundancy analysis (RDA) showed that soil pH, total nitrogen and Cd concentration were the primary factors influencing earthworm communities, explaining 33.7%, 29.1% and 26.7% of the total variance, respectively. In addition, epigeic earthworm Metaphire californica bioaccumulated more Cd (0.27-0.60 mmol/kg), while endogeic earthworm Amynthas hupeiensis and anecic earthworm Amynthas asacceus bioaccumulated more Cu (0.55-1.62 mmol/kg) and Zn (2.86-6.46 mmol/kg) from soil, respectively, which were related to their habit soils and showed the species-specific bioaccumulation features. Our study discovered the diverse responses of earthworm ecotypes to metal contamination and their specific features of metal bioaccumulation, provide insight for soil risk assessments and for biodiversity conservation from a niche partitioning perspective. CAPSULE: Earthworms of different ecotypes showed different responses to soil metal contamination and species-specific features of metal bioaccumulation.
Collapse
Affiliation(s)
- Caide Huang
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China
| | - Yan Ge
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China
| | - Shizhong Yue
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China; Shandong Provincial Key Laboratory of Biophysics, Institute of Biophysics, Dezhou University, Dezhou 253023, China
| | - Yuhui Qiao
- College of Resources and Environmental Science, China Agricultural University, Beijing 100193, China; Beijing Key Laboratory of Biodiversity and Organic Farming, China Agricultural University, Beijing 100193, China.
| | - Longsheng Liu
- Hengyang Academy of Agricultural Sciences, Hengyang 421151, China
| |
Collapse
|