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Combe M, Reverter M, Caruso D, Pepey E, Gozlan RE. Impact of Global Warming on the Severity of Viral Diseases: A Potentially Alarming Threat to Sustainable Aquaculture Worldwide. Microorganisms 2023; 11:microorganisms11041049. [PMID: 37110472 PMCID: PMC10146364 DOI: 10.3390/microorganisms11041049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Revised: 04/12/2023] [Accepted: 04/13/2023] [Indexed: 04/29/2023] Open
Abstract
With an ever-increasing human population, food security remains a central issue for the coming years. The magnitude of the environmental impacts of food production has motivated the assessment of the environmental and health benefits of shifting diets, from meat to fish and seafood. One of the main concerns for the sustainable development of aquaculture is the emergence and spread of infectious animal diseases in a warming climate. We conducted a meta-analysis to investigate the influence of global warming on mortality due to viral infections in farmed aquatic animals. We found a positive trend between increasing temperature and increasing viral virulence, with an increase in water temperature of 1 °C resulting in an increase in mortality of 1.47-8.33% in OsHV-1 infected oysters, 2.55-6.98% in carps infected with CyHV-3 and 2.18-5.37% in fishes infected with NVVs. We suggest that global warming is going to pose a risk of viral disease outbreaks in aquaculture and could compromise global food security.
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Affiliation(s)
- Marine Combe
- ISEM, Université de Montpellier, CNRS, IRD, 34095 Montpellier, France
| | - Miriam Reverter
- ISEM, Université de Montpellier, CNRS, IRD, 34095 Montpellier, France
- Marine Biology and Ecology Research Centre, School of Biological and Marine Sciences, University of Plymouth, Plymouth PL4 8AA, UK
| | - Domenico Caruso
- ISEM, Université de Montpellier, CNRS, IRD, 34095 Montpellier, France
| | - Elodie Pepey
- ISEM, Université de Montpellier, CNRS, IRD, 34095 Montpellier, France
- CIRAD, UMR ISEM, 34398 Montpellier, France
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Delmotte J, Pelletier C, Morga B, Galinier R, Petton B, Lamy JB, Kaltz O, Avarre JC, Jacquot M, Montagnani C, Escoubas JM. Genetic diversity and connectivity of the Ostreid herpesvirus 1 populations in France: A first attempt to phylogeographic inference for a marine mollusc disease. Virus Evol 2022; 8:veac039. [PMID: 35600094 PMCID: PMC9119428 DOI: 10.1093/ve/veac039] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 04/19/2022] [Accepted: 04/22/2022] [Indexed: 11/18/2022] Open
Abstract
The genetic diversity of viral populations is a key driver of the spatial and temporal diffusion of viruses; yet, studying the diversity of whole genomes from natural populations still remains a challenge. Phylodynamic approaches are commonly used for RNA viruses harboring small genomes but have only rarely been applied to DNA viruses with larger genomes. Here, we used the Pacific oyster mortality syndrome (a disease that affects oyster farms around the world) as a model to study the genetic diversity of its causative agent, the Ostreid herpesvirus 1 (OsHV-1) in the three main French oyster-farming areas. Using ultra-deep sequencing on individual moribund oysters and an innovative combination of bioinformatics tools, we de novo assembled twenty-one OsHV-1 new genomes. Combining quantification of major and minor genetic variations, phylogenetic analysis, and ancestral state reconstruction of discrete traits approaches, we assessed the connectivity of OsHV-1 viral populations between the three oyster-farming areas. Our results suggest that the Marennes-Oléron Bay represents the main source of OsHV-1 diversity, from where the virus has dispersed to other farming areas, a scenario consistent with current practices of oyster transfers in France. We demonstrate that phylodynamic approaches can be applied to aquatic DNA viruses to determine how epidemiological, immunological, and evolutionary processes act and potentially interact to shape their diversity patterns.
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Affiliation(s)
| | - Camille Pelletier
- Ifremer, RBE-ASIM, Station La Tremblade, La Tremblade F-17390, France
| | - Benjamin Morga
- Ifremer, RBE-ASIM, Station La Tremblade, La Tremblade F-17390, France
| | - Richard Galinier
- IHPE, CNRS, Ifremer, UPVD, University of Montpellier, Perpignan F-66000, France
| | - Bruno Petton
- Ifremer, CNRS, IRD, Ifremer, LEMAR UMR 6539 Université de Bretagne Occidentale, Argenton-en-Landunvez F-29840, France
| | | | - Oliver Kaltz
- ISEM, IRD, CNRS, University of Montpellier, Montpellier F-34095, France
| | | | - Maude Jacquot
- Ifremer, RBE-ASIM, Station La Tremblade, La Tremblade F-17390, France
- IHPE, CNRS, Ifremer, UPVD, University of Montpellier, Montpellier F-34095, France
| | - Caroline Montagnani
- IHPE, CNRS, Ifremer, UPVD, University of Montpellier, Montpellier F-34095, France
| | - Jean-Michel Escoubas
- IHPE, CNRS, Ifremer, UPVD, University of Montpellier, Montpellier F-34095, France
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3
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Abstract
Contamination of oysters with a variety of viruses is one key pathway to trigger outbreaks of massive oyster mortality as well as human illnesses, including gastroenteritis and hepatitis. Much effort has gone into examining the fate of viruses in contaminated oysters, yet the current state of knowledge of nonlinear virus-oyster interactions is not comprehensive because most studies have focused on a limited number of processes under a narrow range of experimental conditions. A framework is needed for describing the complex nonlinear virus-oyster interactions. Here, we introduce a mathematical model that includes key processes for viral dynamics in oysters, such as oyster filtration, viral replication, the antiviral immune response, apoptosis, autophagy, and selective accumulation. We evaluate the model performance for two groups of viruses, those that replicate in oysters (e.g., ostreid herpesvirus) and those that do not (e.g., norovirus), and show that this model simulates well the viral dynamics in oysters for both groups. The model analytically explains experimental findings and predicts how changes in different physiological processes and environmental conditions nonlinearly affect in-host viral dynamics, for example, that oysters at higher temperatures may be more resistant to infection by ostreid herpesvirus. It also provides new insight into food treatment for controlling outbreaks, for example, that depuration for reducing norovirus levels is more effective in environments where oyster filtration rates are higher. This study provides the foundation of a modeling framework to guide future experiments and numerical modeling for better prediction and management of outbreaks. IMPORTANCE The fate of viruses in contaminated oysters has received a significant amount of attention in the fields of oyster aquaculture, food quality control, and public health. However, intensive studies through laboratory experiments and in situ observations are often conducted under a narrow range of experimental conditions and for a specific purpose in their respective fields. Given the complex interactions of various processes and nonlinear viral responses to changes in physiological and environmental conditions, a theoretical framework fully describing the viral dynamics in oysters is warranted to guide future studies from a top-down design. Here, we developed a process-based, in-host modeling framework that builds a bridge for better communications between different disciplines studying virus-oyster interactions.
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Fuller AM, VanBlaricom GR, Neuman MJ, Witting DA, Friedman CS. A field sentinel study investigating withering syndrome transmission dynamics in California abalones. MARINE ENVIRONMENTAL RESEARCH 2022; 173:105540. [PMID: 34864337 DOI: 10.1016/j.marenvres.2021.105540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2021] [Revised: 11/24/2021] [Accepted: 11/26/2021] [Indexed: 06/13/2023]
Abstract
We examined the risk of withering syndrome (WS) rickettsia-like organism (WS-RLO) infection in sentinel red abalone (Haliotis rufescens) deployed in modules at two Southern California field sites, one adjacent to an abalone farm and one adjacent to wild abalones. WS-RLO DNA was detected in seawater near modules at the wild abalone site but not near the farm (WS-RLO DNA was detected in the farm effluent). More WS-RLO DNA was detected in tissue from abalone near the farm relative to those near wild abalones (p < 0.05). However, infection prevalence and intensity based on histology were low and similar between sites (p > 0.05) and were independent of WS-RLO DNA loads in abalone tissue and seawater. More stippled (ST)-RLO than WS-RLO were observed with more ST-RLO infections near wild abalone than near the abalone farm (p < 0.05). We demonstrate the utility of caged sentinel abalone to better understand pathogen transmission patterns in the field.
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Affiliation(s)
- Ava M Fuller
- School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA.
| | - Glenn R VanBlaricom
- School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA; US Geological Survey, Washington Cooperative Fish and Wildlife Research Unit, University of Washington, Box 355020, Seattle, WA, 98195, USA
| | - Melissa J Neuman
- NOAA National Marine Fisheries Service Protected Resources Division, 501 West Ocean Blvd, Suite 4200 Long Beach, CA, 90802, USA
| | - David A Witting
- NOAA National Marine Fisheries Service Protected Resources Division, 501 West Ocean Blvd, Suite 4200 Long Beach, CA, 90802, USA
| | - Carolyn S Friedman
- School of Aquatic and Fishery Sciences, University of Washington, Box 355020, Seattle, WA, 98195, USA
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Ridlon AD, Wasson K, Waters T, Adams J, Donatuto J, Fleener G, Froehlich H, Govender R, Kornbluth A, Lorda J, Peabody B, Pinchot IV G, Rumrill SS, Tobin E, Zabin CJ, Zacherl D, Grosholz ED. Conservation aquaculture as a tool for imperiled marine species: Evaluation of opportunities and risks for Olympia oysters, Ostrea lurida. PLoS One 2021; 16:e0252810. [PMID: 34153054 PMCID: PMC8216563 DOI: 10.1371/journal.pone.0252810] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2020] [Accepted: 05/21/2021] [Indexed: 11/24/2022] Open
Abstract
Conservation aquaculture is becoming an important tool to support the recovery of declining marine species and meet human needs. However, this tool comes with risks as well as rewards, which must be assessed to guide aquaculture activities and recovery efforts. Olympia oysters (Ostrea lurida) provide key ecosystem functions and services along the west coast of North America, but populations have declined to the point of local extinction in some estuaries. Here, we present a species-level, range-wide approach to strategically planning the use of aquaculture to promote recovery of Olympia oysters. We identified 12 benefits of culturing Olympia oysters, including identifying climate-resilient phenotypes that add diversity to growers’ portfolios. We also identified 11 key risks, including potential negative ecological and genetic consequences associated with the transfer of hatchery-raised oysters into wild populations. Informed by these trade-offs, we identified ten priority estuaries where aquaculture is most likely to benefit Olympia oyster recovery. The two highest scoring estuaries have isolated populations with extreme recruitment limitation—issues that can be addressed via aquaculture if hatchery capacity is expanded in priority areas. By integrating social criteria, we evaluated which project types would likely meet the goals of local stakeholders in each estuary. Community restoration was most broadly suited to the priority areas, with limited commercial aquaculture and no current community harvest of the species, although this is a future stakeholder goal. The framework we developed to evaluate aquaculture as a tool to support species recovery is transferable to other systems and species globally; we provide a guide to prioritizing local knowledge and developing recommendations for implementation by using transparent criteria. Our collaborative process engaging diverse stakeholders including managers, scientists, Indigenous Tribal representatives, and shellfish growers can be used elsewhere to seek win-win opportunities to expand conservation aquaculture where benefits are maximized for both people and imperiled species.
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Affiliation(s)
- April D. Ridlon
- Science for Nature and People Partnership and National Center for Ecological Analysis and Synthesis, University of California Santa Barbara, Santa Barbara, California, United States of America
- * E-mail:
| | - Kerstin Wasson
- Elkhorn Slough National Estuarine Research Reserve, Watsonvile, California, United States of America
- Ecology and Evolutionary Biology University of California—Santa Cruz, Santa Cruz, California, United States of America
| | - Tiffany Waters
- Global Aquaculture, The Nature Conservancy, Arlington, Virginia, United States of America
| | - John Adams
- Sound Fresh Clams and Oysters, Shelton, Washington, United States of America
| | - Jamie Donatuto
- Community Environmental Health Program, Swinomish Indian Tribal Community, LaConner, Washington, United States of America
| | - Gary Fleener
- Research and Development, Hog Island Oyster Co., Marshall, California, United States of America
| | - Halley Froehlich
- Ecology, Evolution & Marine Biology and Environmental Studies, University of California Santa Barbara, Santa Barbara, California, United States of America
| | - Rhona Govender
- Species at Risk Program, Fisheries and Oceans Canada, British Columbia, Canada
| | - Aaron Kornbluth
- Officer, The Pew Charitable Trusts, Washington D.C., United States of America
| | - Julio Lorda
- Facultad de Ciencias, Universidad Autónoma de Baja California, Mexicali, Mexico
- Tijuana River National Estuarine Research Reserve, Imperial Beach, California, United States of America
| | - Betsy Peabody
- Puget Sound Restoration Fund, Bainbridge Island, Washington, United States of America
| | | | - Steven S. Rumrill
- Marine Resources Program, Oregon Department of Fish and Wildlife, Newport, Oregon, United States of America
| | - Elizabeth Tobin
- Natural Resources Department, Jamestown S’Klallam Tribe, Sequim, Washington, United States of America
| | - Chela J. Zabin
- Marine Invasions Research, Smithsonian Environmental Research Center, Belvedere Tiburon, California, United States of America
| | - Danielle Zacherl
- Department of Biological Science, California State University Fullerton, Fullerton, California, United States of America
| | - Edwin D. Grosholz
- Department of Environmental Science and Policy, University of California—Davis, Davis, California, United States of America
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Burge CA, Friedman CS, Kachmar ML, Humphrey KL, Moore JD, Elston RA. The first detection of a novel OsHV-1 microvariant in San Diego, California, USA. J Invertebr Pathol 2021; 184:107636. [PMID: 34116033 DOI: 10.1016/j.jip.2021.107636] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2020] [Revised: 01/25/2021] [Accepted: 06/04/2021] [Indexed: 11/15/2022]
Abstract
The spread, emergence, and adaptation of pathogens causing marine disease has been problematic to fisheries and aquaculture industries for the last several decades creating the need for strategic management and biosecurity practices. The Pacific oyster (Crassostrea gigas), a highly productive species globally, has been a target of disease and mortality caused by a viral pathogen, the Ostreid herpesvirus 1 (OsHV-1) and its microvariants (OsHV-1 µvars). During routine surveillance to establish health history at a shellfish aquaculture nursery system in San Diego, California, the presence of OsHV-1 in Pacific oyster juveniles was detected. Quantification of OsHV-1 in tissues of oysters revealed OsHV-1 viral loads > 106 copies/mg. We characterized and identified the OsHV-1 variant by sequencing of ORFs 4 (C2/C6) and 43 (IA1/IA2), which demonstrated that this variant is a novel OsHV-1 microvariant: OsHV-1 µvar SD. A pilot transmission study indicates that OsHV-1 µvar SD is infectious with high viral loads ~ 7.57 × 106 copies/mg detected in dead individuals. The detection of OsHV-1 µvar SD in a large port mirrors previous studies conducted in Australia where aquaculture farms and feral populations near port locations may be at a higher risk of OsHV-1 emergence. Further research is needed to understand the impacts of OsHV-1 µvar SD, such as transmission studies focusing on potential vectors and characterization of virulence as compared to other OsHV-1 µvars. To increase biosecurity of the global aquaculture industry, active and passive surveillance may be necessary to reduce spread of pathogens and make appropriate management decisions.
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Affiliation(s)
- Colleen A Burge
- Institute of Marine & Environmental Technology, University of Maryland Baltimore County, 701 E Pratt Street, Baltimore, MD 21202, USA.
| | - Carolyn S Friedman
- School of Aquatic & Fishery Sciences, University of Washington, Box 355020, Seattle, WA 98105, USA
| | - Mariah L Kachmar
- Institute of Marine & Environmental Technology, University of Maryland Baltimore County, 701 E Pratt Street, Baltimore, MD 21202, USA
| | | | - James D Moore
- California Department of Fish & Wildlife, UC Davis Bodega Marine Laboratory, 2099 Westside Road, Bodega Bay, CA 94923, USA
| | - Ralph A Elston
- AquaTechnics Inc, 455 West Bell Street, Sequim, WA 98382, USA
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7
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Agnew MV, Friedman CS, Langdon C, Divilov K, Schoolfield B, Morga B, Degremont L, Dhar AK, Kirkland P, Dumbauld B, Burge CA. Differential Mortality and High Viral Load in Naive Pacific Oyster Families Exposed to OsHV-1 Suggests Tolerance Rather than Resistance to Infection. Pathogens 2020; 9:E1057. [PMID: 33348814 PMCID: PMC7766980 DOI: 10.3390/pathogens9121057] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 12/15/2020] [Accepted: 12/15/2020] [Indexed: 11/25/2022] Open
Abstract
Pacific oysters, Crassostrea gigas, are one of the most productive aquaculture species in the world. However, they are threatened by the spread of Ostreid herpesvirus-1 (OsHV-1) and its microvariants (collectively "µvars"), which cause mass mortalities in all life stages of Pacific oysters globally. Breeding programs have been successful in reducing mortality due to OsHV-1 variants following viral outbreaks; however, an OsHV-1-resistant oyster line does not yet exist in the United States (US), and it is unknown how OsHV-1 µvars will affect US oyster populations compared to the current variant, which is similar to the OsHV-1 reference, found in Tomales Bay, CA. The goals of this study were to investigate the resistance of C. gigas juveniles produced by the Molluscan Broodstock Program (MBP) to three variants of OsHV-1: a California reference OsHV-1, an Australian µvar, and a French µvar. This is the first study to directly compare OsHV-1 µvars to a non-µvar. The survival probability of oysters exposed to the French (FRA) or Australian (AUS) µvar was significantly lower (43% and 71%, respectively) than to the reference variant and controls (96%). No oyster family demonstrated resistance to all three OsHV-1 variants, and many surviving oysters contained high copy numbers of viral DNA (mean ~3.53 × 108). These results indicate that the introduction of OsHV-1 µvars could have substantial effects on US Pacific oyster aquaculture if truly resistant lines are not achieved, and highlight the need to consider resistance to infection in addition to survival as traits in breeding programs to reduce the risk of the spread of OsHV-1 variants.
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Affiliation(s)
- M. Victoria Agnew
- Institute of Marine and Environmental Technology, University of Maryland Baltimore County, Baltimore, MD 21202, USA;
| | - Carolyn S. Friedman
- School of Aquatic and Fishery Sciences, University of Washington, Seattle, WA 98195, USA;
| | - Christopher Langdon
- Department of Fisheries and Wildlife, Coastal Oregon Marine Experiment Station, Hatfield Marine Science Center, Newport, OR 97365, USA; (C.L.); (K.D.); (B.S.)
| | - Konstantin Divilov
- Department of Fisheries and Wildlife, Coastal Oregon Marine Experiment Station, Hatfield Marine Science Center, Newport, OR 97365, USA; (C.L.); (K.D.); (B.S.)
| | - Blaine Schoolfield
- Department of Fisheries and Wildlife, Coastal Oregon Marine Experiment Station, Hatfield Marine Science Center, Newport, OR 97365, USA; (C.L.); (K.D.); (B.S.)
| | - Benjamin Morga
- Ifremer, SG2M, LGPMM, 17390 La Tremblade, France; (B.M.); (L.D.)
| | - Lionel Degremont
- Ifremer, SG2M, LGPMM, 17390 La Tremblade, France; (B.M.); (L.D.)
| | - Arun K. Dhar
- Aquaculture Pathology Laboratory, School of Animal and Comparative Biomedical Sciences, University of Arizona, Tucson, AZ 85721, USA;
| | - Peter Kirkland
- NSW Department of Primary Industries, Elizabeth Macarthur Agricultural Institute, Menangle, NSW 2568, Australia;
| | - Brett Dumbauld
- Hatfield Marine Science Center, USDA-ARS, Newport, OR 97365, USA;
| | - Colleen A. Burge
- Institute of Marine and Environmental Technology, University of Maryland Baltimore County, Baltimore, MD 21202, USA;
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