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He Q, Tan B, Li M, Su J, Lin B, Wu NP, Shen HN, Chen JJ, Zhang Q. Deciphering the influence of salinity stress on the biological aniline degradation system: Pollutants degradation performance and microbial response. ENVIRONMENTAL RESEARCH 2024; 255:119162. [PMID: 38762003 DOI: 10.1016/j.envres.2024.119162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 04/14/2024] [Accepted: 05/14/2024] [Indexed: 05/20/2024]
Abstract
In order to evaluate the impact of salinity gradients on the aniline biodegradation system, six reactors at salinity concentrations (0%-5%) were established. The results presented the salinity except for 5% imposed negligible effects on aniline degradation performance. Nitrification had prominent resistance to salinity (0%-1.5%) while were significantly restrained when salinity increased. The total nitrogen (TN) removal efficiency of Z4 (1.5%) was 20.5% higher than Z1 (0%) during the stable operation phase. Moreover, high throughput sequencing analysis showed that halophilic bacterium, such as Halomonas, Rhodococcus, remained greater survival advantages in high salinity system. The substantial enrichment of Flavobacterium, Dokdonella, Paracoccus observed in Z4 ensured its excellent nitrogen removal performance. The close cooperation among dominant functional bacteria was strengthened when salt content was below 1.5% while exceeding 1.5% led to the collapse of metabolic capacity through integrating the toxicity of aniline and high osmotic pressure.
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Affiliation(s)
- Qi He
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China
| | - Bin Tan
- CCCC Second Highway Consultants Co., Ltd., Wuhan, 430056, PR China
| | - Meng Li
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China; Sanya Science and Education Innovation Park, Wuhan University of Technology, Hainan, 572024, PR China
| | - Junhao Su
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China
| | - Bing Lin
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China
| | - Nan-Ping Wu
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China
| | - Hao-Nan Shen
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China
| | - Jia-Jing Chen
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China; Sanya Science and Education Innovation Park, Wuhan University of Technology, Hainan, 572024, PR China
| | - Qian Zhang
- School of Civil Engineering & Architecture, Wuhan University of Technology, Wuhan, 430070, PR China.
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2
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Zhang D, Calmanovici B, Marican H, Reisser J, Summers S. The assembly and ecological roles of biofilms attached to plastic debris of Ashmore reef. MARINE POLLUTION BULLETIN 2024; 205:116651. [PMID: 38917500 DOI: 10.1016/j.marpolbul.2024.116651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 06/21/2024] [Accepted: 06/21/2024] [Indexed: 06/27/2024]
Abstract
Plastic pollution in the ocean is a global environmental hazard aggravated by poor management of plastic waste and growth of annual plastic consumption. Microbial communities colonizing the plastic's surface, the plastisphere, has gained global interest resulting in numerous efforts to characterize the plastisphere. However, there are insufficient studies deciphering the underlying metabolic processes governing the function of the plastisphere and the plastic they reside upon. Here, we collected plastic and seawater samples from Ashmore Reef in Australia to examine the planktonic microbes and plastic associated biofilm (PAB) to investigate the ecological impact, pathogenic potential, and plastic degradation capabilities of PAB in Ashmore Reef, as well as the role and impact of bacteriophages on PAB. Using high-throughput metagenomic sequencing, we demonstrated distinct microbial communities between seawater and PAB. Similar numbers of pathogenic bacteria were found in both sample types, yet plastic and seawater select for different pathogen populations. Virulence Factor analysis further illustrated stronger pathogenic potential in PAB, highlighting the pathogenicity of environmental PAB. Furthermore, functional analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) metabolic pathways revealed xenobiotic degradation and fatty acid degradation to be enriched in PABs. In addition, construction of metagenome-assembled genomes (MAG) and functional analysis further demonstrated the presence of a complete Polyethylene (PE) degradation pathway in multiple Proteobacteria MAGs, especially in Rhodobacteriaceae sp. Additionally, we identified viral population presence in PAB, revealing the key role of bacteriophages in shaping these communities within the PAB. Our result provides a comprehensive overview of the various ecological processes shaping microbial community on marine plastic debris.
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Affiliation(s)
- Dong Zhang
- Singapore Centre for Environmental Life Sciences Engineering, National University of Singapore, 28 Medical Drive, Singapore 117456, Singapore; Tropical Marine Science Institute, St. John's Island National Marine Laboratory, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore
| | - Bruna Calmanovici
- UWA Oceans Institute, The University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Hana Marican
- Singapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, 60 Nanyang Drive, Singapore 117456, Singapore
| | - Julia Reisser
- UWA Oceans Institute, The University of Western Australia, 35 Stirling Highway, Perth, WA 6009, Australia
| | - Stephen Summers
- Singapore Centre for Environmental Life Sciences Engineering, National University of Singapore, 28 Medical Drive, Singapore 117456, Singapore; Tropical Marine Science Institute, St. John's Island National Marine Laboratory, National University of Singapore, 18 Kent Ridge Road, Singapore 119227, Singapore.
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3
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Lv S, Wang Q, Li Y, Gu L, Hu R, Chen Z, Shao Z. Biodegradation of polystyrene (PS) and polypropylene (PP) by deep-sea psychrophilic bacteria of Pseudoalteromonas in accompany with simultaneous release of microplastics and nanoplastics. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 948:174857. [PMID: 39029759 DOI: 10.1016/j.scitotenv.2024.174857] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 06/27/2024] [Accepted: 07/16/2024] [Indexed: 07/21/2024]
Abstract
Plastics dumped in the environment are fragmented into microplastics by various factors (UV, weathering, mechanical abrasion, animal chewing, etc.). However, little is known about plastic fragmentation and degradation mediated by deep-sea microflora. To obtain deep-sea bacteria that can degrade plastics, we enriched in situ for 1 year in the Western Pacific using PS as a carbon source. Subsequently, two deep-sea prevalent bacteria of the genus Pseudoalteromonas (Pseudoalteromonas lipolytica and Pseudoalteromonas tetraodonis) were isolated after 6 months enrichment in the laboratory under low temperature (15 °C). Both showed the ability to degrade polystyrene (PS) and polypropylene (PP), and biodegradation accelerated the generation of micro- and nanoplastics. Plastic biodegradation was evidenced by the formation of carboxyl and carboxylic acid groups, heat resistance decrease and plastic weight loss. After 80 days incubation at 15 °C, the microplastic concentration of PS and PP could be up to 1.94 × 107/L and 5.83 × 107/L, respectively, and the proportion of nanoplastics (< 1 μm) could be up to 65.8 % and 73.6 %. The film weight loss were 5.4 % and 4.5 % of the PS films, and 2.3 % and 1.8 % of the PP films by P. lipolytica and P. tetraodonis, respectively; thus after discounting the weight loss of microplastics, the only 3.9 % and 2.8 % of the PS films, and 1.3 % and 0.7 % of the PP films, respectively, were truly degraded by the two bacteria respectively after 80 days of incubation. This study highlights the role of Pseudoalteromonas in fragmentation and degradation of plastics in cold dark pelagic deep sea.
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Affiliation(s)
- Shiwei Lv
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, China; School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Quanfu Wang
- School of Environment, Harbin Institute of Technology, Harbin 150090, China
| | - Yufei Li
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, China
| | - Li Gu
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, China
| | - Rongxiang Hu
- Center for Composite Materials and Structures, Harbin Institute of Technology, Harbin 15080, China
| | - Zhen Chen
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, China
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Fujian Key Laboratory of Marine Genetic Resources, Xiamen 361005, China; School of Environment, Harbin Institute of Technology, Harbin 150090, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519000, China.
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4
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Philippe A, Salaun M, Quemener M, Noël C, Tallec K, Lacroix C, Coton E, Burgaud G. Colonization and Biodegradation Potential of Fungal Communities on Immersed Polystyrene vs. Biodegradable Plastics: A Time Series Study in a Marina Environment. J Fungi (Basel) 2024; 10:428. [PMID: 38921415 PMCID: PMC11204492 DOI: 10.3390/jof10060428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/30/2024] [Accepted: 06/13/2024] [Indexed: 06/27/2024] Open
Abstract
Plastic pollution of the ocean is a major environmental threat. In this context, a better understanding of the microorganisms able to colonize and potentially degrade these pollutants is of interest. This study explores the colonization and biodegradation potential of fungal communities on foamed polystyrene and alternatives biodegradable plastics immersed in a marina environment over time, using the Brest marina (France) as a model site. The methodology involved a combination of high-throughput 18S rRNA gene amplicon sequencing to investigate fungal taxa associated with plastics compared to the surrounding seawater, and a culture-dependent approach to isolate environmentally relevant fungi to further assess their capabilities to utilize polymers as carbon sources. Metabarcoding results highlighted the significant diversity of fungal communities associated with both foamed polystyrene and biodegradable plastics, revealing a dynamic colonization process influenced by the type of polymer and immersion time. Notably, the research suggests a potential for certain fungal species to utilize polymers as a carbon source, emphasizing the need for further exploration of fungal biodegradation potential and mechanisms.
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Affiliation(s)
- Aurélie Philippe
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Marie Salaun
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Maxence Quemener
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Cyril Noël
- Ifremer, IRSI, SeBiMER Service de Bioinformatique de l’Ifremer, F-29280 Plouzané, France;
| | - Kévin Tallec
- CEDRE Centre de Documentation, de Recherche et d’Expérimentations sur les Pollutions Accidentelles des Eaux, 715 Rue Alain Colas, CS 41836, CEDEX 2, 29218 Brest, France; (K.T.); (C.L.)
| | - Camille Lacroix
- CEDRE Centre de Documentation, de Recherche et d’Expérimentations sur les Pollutions Accidentelles des Eaux, 715 Rue Alain Colas, CS 41836, CEDEX 2, 29218 Brest, France; (K.T.); (C.L.)
| | - Emmanuel Coton
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
| | - Gaëtan Burgaud
- Univ Brest, INRAE, Laboratoire Universitaire de Biodiversité et Écologie Microbienne, F-29280 Plouzané, France; (A.P.); (M.S.); (M.Q.); (E.C.)
- Institut Universitaire de France, France
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5
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Parida D, Katare K, Ganguly A, Chakraborty D, Konar O, Nogueira R, Bala K. Molecular docking and metagenomics assisted mitigation of microplastic pollution. CHEMOSPHERE 2024; 351:141271. [PMID: 38262490 DOI: 10.1016/j.chemosphere.2024.141271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 01/18/2024] [Accepted: 01/19/2024] [Indexed: 01/25/2024]
Abstract
Microplastics, tiny, flimsy, and direct progenitors of principal and subsidiary plastics, cause environmental degradation in aquatic and terrestrial entities. Contamination concerns include irrevocable impacts, potential cytotoxicity, and negative health effects on mortals. The detection, recovery, and degradation strategies of these pollutants in various biota and ecosystems, as well as their impact on plants, animals, and humans, have been a topic of significant interest. But the natural environment is infested with several types of plastics, all having different chemical makeup, structure, shape, and origin. Plastic trash acts as a substrate for microbial growth, creating biofilms on the plastisphere surface. This colonizing microbial diversity can be glimpsed with meta-genomics, a culture-independent approach. Owing to its comprehensive description of microbial communities, genealogical evidence on unconventional biocatalysts or enzymes, genomic correlations, evolutionary profile, and function, it is being touted as one of the promising tools in identifying novel enzymes for the degradation of polymers. Additionally, computational tools such as molecular docking can predict the binding of these novel enzymes to the polymer substrate, which can be validated through in vitro conditions for its environmentally feasible applications. This review mainly deals with the exploration of metagenomics along with computational tools to provide a clearer perspective into the microbial potential in the biodegradation of microplastics. The computational tools due to their polymathic nature will be quintessential in identifying the enzyme structure, binding affinities of the prospective enzymes to the substrates, and foretelling of degradation pathways involved which can be quite instrumental in the furtherance of the plastic degradation studies.
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Affiliation(s)
- Dinesh Parida
- Department of Biosciences and Biomedical Engineering, Indian Institute of Technology, Indore, 453552, India.
| | - Konica Katare
- Department of Biosciences and Biomedical Engineering, Indian Institute of Technology, Indore, 453552, India.
| | - Atmaadeep Ganguly
- Department of Microbiology, Ramakrishna Mission Vivekananda Centenary College, West Bengal State University, Kolkata, 700118, India.
| | - Disha Chakraborty
- Department of Botany, Shri Shikshayatan College, University of Calcutta, Lord Sinha Road, Kolkata, 700071, India.
| | - Oisi Konar
- Department of Botany, Shri Shikshayatan College, University of Calcutta, Lord Sinha Road, Kolkata, 700071, India.
| | - Regina Nogueira
- Institute of Sanitary Engineering and Waste Management, Leibniz Universität, Hannover, Germany.
| | - Kiran Bala
- Department of Biosciences and Biomedical Engineering, Indian Institute of Technology, Indore, 453552, India.
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6
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Wu Z, Sun J, Xu L, Zhou H, Cheng H, Chen Z, Wang Y, Yang J. Depth significantly affects plastisphere microbial evenness, assembly and co-occurrence pattern but not richness and composition. JOURNAL OF HAZARDOUS MATERIALS 2024; 463:132921. [PMID: 37944228 DOI: 10.1016/j.jhazmat.2023.132921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 10/12/2023] [Accepted: 11/01/2023] [Indexed: 11/12/2023]
Abstract
Microplastics have become one of the hot concerns of global marine pollution. In recent years, diversity and abiotic influence factors of plastisphere microbial communities were well documented, but our knowledge of their assembly mechanisms and co-occurrence patterns remains unclear, especially the effects of depth on them. Here, we collected microorganisms on microplastics to investigate how ocean depth affects on microbial diversity, community composition, assembly processes and co-occurrence patterns. Our results indicated that there were similar microbial richness and community compositions but microbial evenness and unique microbes were obviously different in different ocean layers. Our findings also demonstrated that deterministic processes played dominant roles in the assembly of the mesopelagic plastisphere microbial communities, while the bathypelagic microbial community assembly was mainly shaped by stochastic processes. In addition, the co-occurrence networks suggested that the relationships between microorganisms in the mesopelagic layer were more complex and stable than those in the bathypelagic layer. Simultaneously, we also found that Proteobacteria and Actinobacteriota were the most abundant keystones which played important roles in microbial co-occurrence networks at both layers. This study enhanced our understanding of microbial diversity, assembly mechanism, and co-occurrence pattern on plastisphere surfaces, and provided useful insights into microorganisms capable of degrading plastics and microbial remediation.
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Affiliation(s)
- Zhiqiang Wu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China
| | - Jianxing Sun
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China
| | - Liting Xu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China
| | - Hongbo Zhou
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China; Key Laboratory of Biohydrometallurgy of Ministry of Education, Changsha 410083, Hunan, PR China
| | - Haina Cheng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China; Key Laboratory of Biohydrometallurgy of Ministry of Education, Changsha 410083, Hunan, PR China
| | - Zhu Chen
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China; Key Laboratory of Biohydrometallurgy of Ministry of Education, Changsha 410083, Hunan, PR China
| | - Yuguang Wang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, Hunan, PR China; Key Laboratory of Biohydrometallurgy of Ministry of Education, Changsha 410083, Hunan, PR China.
| | - Jichao Yang
- College of Marine Science and Engineering, Shandong University of Science and Technology, Qingdao 266590, Shandong, PR China.
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7
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Stevenson EM, Buckling A, Cole M, Lindeque PK, Murray AK. Selection for antimicrobial resistance in the plastisphere. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 908:168234. [PMID: 37924893 DOI: 10.1016/j.scitotenv.2023.168234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 10/20/2023] [Accepted: 10/29/2023] [Indexed: 11/06/2023]
Abstract
Microplastics and antimicrobials are widespread contaminants that threaten global systems and frequently co-exist in the presence of human or animal pathogens. Whilst the impact of each of these contaminants has been studied in isolation, the influence of this co-occurrence in driving antimicrobial resistance (AMR)1 in microplastic-adhered microbial communities, known as 'the Plastisphere', is not well understood. This review proposes the mechanisms by which interactions between antimicrobials and microplastics may drive selection for AMR in the Plastisphere. These include: 1) increased rates of horizontal gene transfer in the Plastisphere compared with free-living counterparts and natural substrate controls due to the proximity of cells, co-occurrence of environmental microplastics with AMR selective compounds and the sequestering of extracellular antibiotic resistance genes in the biofilm matrix. 2) An elevated AMR selection pressure in the Plastisphere due to the adsorbing of AMR selective or co-selective compounds to microplastics at concentrations greater than those found in surrounding mediums and potentially those adsorbed to comparator particles. 3) AMR selection pressure may be further elevated in the Plastisphere due to the incorporation of antimicrobial or AMR co-selective chemicals in the plastic matrix during manufacture. Implications for both ecological functioning and environmental risk assessments are discussed, alongside recommendations for further research.
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Affiliation(s)
- Emily M Stevenson
- European Centre for Environment and Human Health, Environment and Sustainability Institute, University of Exeter Medical School, Faculty of Health and Life Sciences, Penryn Campus, Cornwall, UK; Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK; Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Angus Buckling
- Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Matthew Cole
- Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK
| | - Penelope K Lindeque
- Marine Ecology & Biodiversity, Plymouth Marine Laboratory, Prospect Place, West Hoe, Plymouth PL1 3DH, UK; Faculty of Environment, Science and Economy, University of Exeter, Penryn Campus, Cornwall TR10 9FE, UK
| | - Aimee K Murray
- European Centre for Environment and Human Health, Environment and Sustainability Institute, University of Exeter Medical School, Faculty of Health and Life Sciences, Penryn Campus, Cornwall, UK.
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8
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Sun Y, Mazzotta MG, Miller CA, Apprill A, Izallalen M, Mazumder S, Perri ST, Edwards B, Reddy CM, Ward CP. Distinct microbial communities degrade cellulose diacetate bioplastics in the coastal ocean. Appl Environ Microbiol 2023; 89:e0165123. [PMID: 38054734 PMCID: PMC10734458 DOI: 10.1128/aem.01651-23] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 10/23/2023] [Indexed: 12/07/2023] Open
Abstract
IMPORTANCE Cellulose diacetate (CDA) is a promising alternative to conventional plastics due to its versatility in manufacturing and low environmental persistence. Previously, our group demonstrated that CDA is susceptible to biodegradation in the ocean on timescales of months. In this study, we report the composition of microorganisms driving CDA degradation in the coastal ocean. We found that the coastal ocean harbors distinct bacterial taxa implicated in CDA degradation and these taxa have not been previously identified in prior CDA degradation studies, indicating an unexplored diversity of CDA-degrading bacteria in the ocean. Moreover, the shape of the plastic article (e.g., a fabric, film, or foam) and plasticizer in the plastic matrix selected for different microbial communities. Our findings pave the way for future studies to identify the specific species and enzymes that drive CDA degradation in the marine environment, ultimately yielding a more predictive understanding of CDA biodegradation across space and time.
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Affiliation(s)
- Yanchen Sun
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | | | - Carolyn A. Miller
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Amy Apprill
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | | | | | | | | | - Christopher M. Reddy
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
| | - Collin P. Ward
- Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
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9
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Zhao S, Liu R, Wang J, Lv S, Zhang B, Dong C, Shao Z. Biodegradation of polyethylene terephthalate (PET) by diverse marine bacteria in deep-sea sediments. Environ Microbiol 2023; 25:2719-2731. [PMID: 37421171 DOI: 10.1111/1462-2920.16460] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2022] [Accepted: 06/19/2023] [Indexed: 07/09/2023]
Abstract
PET plastic waste entering the oceans is supposed to take hundreds of years to degrade and tends to accumulate in the deep sea. However, we know little about the bacteria capable of plastic degradation therein. To determine whether PET-degrading bacteria are present in deep-sea sediment, we collected the samples from the eastern central Pacific Ocean and initiated microbial incubation with PET as the carbon source. After enrichment with PET for 2 years, we gained all 15 deep-sea sediment communities at five oceanic sampling sites. Bacterial isolation for pure culture and further growth tests confirmed that diverse bacteria possess degradation ability including Alcanivorax xenomutans BC02_1_A5, Marinobacter sediminum BC31_3_A1, Marinobacter gudaonensis BC06_2_A6, Thalassospira xiamenensis BC02_2_A1 and Nocardioides marinus BC14_2_R3. Furthermore, four strains were chosen as representatives to reconfirm the PET degradation capability by SEM, weight loss and UPLC-MS. The results showed that after 30-day incubation, 1.3%-1.8% of PET was lost. De-polymerization of PET by the four strains was confirmed by the occurrence of the PET monomer of MHET and TPA as the key degradation products. Bacterial consortia possessing PET-degrading potential are prevalent and diverse and might play a key role in the removal of PET pollutants in deep oceans.
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Affiliation(s)
- Sufang Zhao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
- School of Marine Science and Technology, Harbin Institute of Technology, Weihai, China
| | - Renju Liu
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
- School of Environmental Science, Harbin Institute of Technology, Harbin, China
| | - Juan Wang
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
| | - Shiwei Lv
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
- School of Environmental Science, Harbin Institute of Technology, Harbin, China
| | - Benjuan Zhang
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
- School of Fisheries and Life, Shanghai Ocean University, Shanghai, China
| | - Chunming Dong
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
| | - Zongze Shao
- Key Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Xiamen, China
- School of Marine Science and Technology, Harbin Institute of Technology, Weihai, China
- School of Environmental Science, Harbin Institute of Technology, Harbin, China
- School of Fisheries and Life, Shanghai Ocean University, Shanghai, China
- Southern Marine Science and Engineering Guangdong Laboratory, Zhuhai, China
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10
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Karkanorachaki K, Syranidou E, Kalogerakis N. Extreme weather events as an important factor for the evolution of plastisphere but not for the degradation process. WATER RESEARCH 2023; 246:120687. [PMID: 37801984 DOI: 10.1016/j.watres.2023.120687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 09/26/2023] [Accepted: 09/29/2023] [Indexed: 10/08/2023]
Abstract
Marine plastics, with their negative effects on marine life and the human health, have been recently recognized as a new niche for the colonization and development of marine biofilms. Members of the colonizing communities could possess the potential for plastic biodegradation. Thus, there is an urgent need to characterize these complex and geographically variable communities and elucidate the functionalities. In this work, we characterize the fungal and bacterial colonizers of 5 types of plastic films (High Density Polyethylene, Low Density Polyethylene, Polypropylene, Polystyrene and Polyethylene Terepthalate) over the course of a 242-day incubation in the south-eastern Mediterranean and relate them to the chemical changes observed on the surface of the samples via ATR-FTIR. The 16s rRNA and ITS2 ribosomal regions of the plastisphere communities were sequenced on four time points (35, 152, 202 and 242 days). The selection of the time points was dictated by the occurrence of a severe storm which removed biological fouling from the surface of the samples and initiated a second colonization period. The bacterial communities, dominated by Proteobacteria and Bacteroidetes, were the most variable and diverse. Fungal communities, characterized mainly by the presence of Ascomycota, were not significantly affected by the storm. Neither bacterial nor fungal community structure were related to the polymer type acting as substrate, while the surface of the plastic samples underwent weathering of oscillating degrees with time. This work examines the long-term development of Mediterranean epiplastic biofilms and is the first to examine how primary colonization influences the microbial community re-attachment and succession as a response to extreme weather events. Finally, it is one of the few studies to examine fungal communities, despite them containing putative plastic degraders.
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Affiliation(s)
- Katerina Karkanorachaki
- School of Chemical and Environmental Engineering, Technical University of Crete, GR-73100, Chania, Greece
| | - Evdokia Syranidou
- School of Chemical and Environmental Engineering, Technical University of Crete, GR-73100, Chania, Greece
| | - Nicolas Kalogerakis
- School of Chemical and Environmental Engineering, Technical University of Crete, GR-73100, Chania, Greece; Institute of GeoEnergy, Foundation for Research and Technology - Hellas, GR-73100, Chania, Greece.
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11
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Wang X, Zhang X, Yao C, Shan E, Lv X, Teng J, Zhao J, Wang Q. Impact of aged and virgin microplastics on sedimentary nitrogen cycling and microbial ecosystems in estuaries. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 878:162977. [PMID: 36963689 DOI: 10.1016/j.scitotenv.2023.162977] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2023] [Revised: 03/16/2023] [Accepted: 03/17/2023] [Indexed: 05/13/2023]
Abstract
Microplastics (MPs) entering the environment undergo complex weathering (aging) processes, however, the impacts of aged MPs on estuarine nitrogen cycling and microbial ecosystems remain largely unknown. In this study, a 50 days microcosm experiment was conducted to investigate the response of sedimentary nitrogen (N) transformation processes, N2O emission and microbial communities to virgin and aged MPs (PE and PS) exposure. We found that aged MPs influenced sediment nitrogen turnover more rapidly and profoundly than virgin MPs and showed type and dose-response effect. During the first 10 days, higher concentration (3 % by weight of sediment) aged MPs (both PS and PE) treatments significantly promoted denitrification (ANOVA, P < 0.05), while virgin MPs treatments had weak effect on denitrification, compared with the control (P > 0.05). Moreover, higher concentration aged PS-MPs remarkably enhanced N2O emission on the 10th day, while N2O was consumed in the control. After 50 days incubation, there was an overall increase in nirK gene abundance exposed to MPs, and nosZ gene copies in aged PS treatments were around twice that in the control based on qPCR (P < 0.05). The function prediction also showed significant elevation of relative abundance of denitrification and DNRA relevant genes in bacterial community. In addition, aged PS treatment (3 %) recruited specific bacterial and archaeal assemblies, with Sedimenticolaceae, Lentimicrobiaceae, SCGC_AAA011-D5, SG8-5, Lokiarchaeia, and Odinarchaeia selectively enriched in the treatment. Our study highlighted that virgin and aged MPs had different impact on sediment nitrogen cycling, and the ecological risks of aged MPs should be concerned since all MPs eventually get weathered when they enter the environment.
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Affiliation(s)
- Xiaodan Wang
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Xiaoli Zhang
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China
| | - Cheng Yao
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Encui Shan
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Xiaojing Lv
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Jia Teng
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China
| | - Jianmin Zhao
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China
| | - Qing Wang
- Research and Development Center for Efficient Utilization of Coastal Bioresources, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China; Muping Coastal Environment Research Station, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, Yantai 264003, PR China.
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12
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Huang B, Chen G, Zhang H, Hou G, Radenkovic M. Instant deep sea debris detection for maneuverable underwater machines to build sustainable ocean using deep neural network. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 878:162826. [PMID: 36996973 DOI: 10.1016/j.scitotenv.2023.162826] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 02/07/2023] [Accepted: 03/09/2023] [Indexed: 05/13/2023]
Abstract
Deep sea debris is any persistent man-made material that ends up in the deep sea. The scale and rapidly increasing amount of sea debris are endangering the health of the ocean. So, many marine communities are struggling for the objective of a clean, healthy, resilient, safe, and sustainably harvested ocean. That includes deep sea debris removal with maneuverable underwater machines. Previous studies have demonstrated that deep learning methods can successfully extract features from seabed images or videos, and are capable of identifying and detecting debris to facilitate debris collection. In this paper, the lightweight neural network (termed DSDebrisNet), which can leverage the detection speed and identification performance to achieve instant detection with high accuracy, is proposed to implement compound-scaled deep sea debris detection. In DSDebrisNet, a hybrid loss function considering the illumination and detection problem was also introduced to improve performance. In addition, the DSDebris dataset is constructed by extracting images and video frames from the JAMSTEC dataset and labeled using a graphical image annotation tool. The experiments are implemented on the deep sea debris dataset, and the results indicate that the proposed methodology can achieve promising detection accuracy in real-time. The in-depth study also provides significant evidence for the successful extension branch of artificial intelligence to the deep sea research domain.
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Affiliation(s)
- Baoxiang Huang
- School of Computer Science and Technology, Qingdao University, China; Laboratory for Regional Oceanography and Numerical Modeling, Laoshan Laboratory, China
| | - Ge Chen
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, School of Marine Technology, Ocean University of China, China; Laboratory for Regional Oceanography and Numerical Modeling, Laoshan Laboratory, China.
| | - Hongfeng Zhang
- School of Computer Science and Technology, Qingdao University, China
| | - Guojia Hou
- School of Computer Science and Technology, Qingdao University, China
| | - Milena Radenkovic
- School of Computer Science and Information Technology, The University of Nottingham, United Kingdom
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13
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Bitalac JMS, Lantican NB, Gomez NCF, Onda DFL. Attachment of potential cultivable primo-colonizing bacteria and its implications on the fate of low-density polyethylene (LDPE) plastics in the marine environment. JOURNAL OF HAZARDOUS MATERIALS 2023; 451:131124. [PMID: 36871466 DOI: 10.1016/j.jhazmat.2023.131124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Revised: 02/27/2023] [Accepted: 03/01/2023] [Indexed: 06/18/2023]
Abstract
Plastics released in the environment become suitable matrices for microbial attachment and colonization. Plastics-associated microbial communities interact with each other and are metabolically distinct from the surrounding environment. However, pioneer colonizing species and their interaction with the plastic during initial colonization are less described. Marine sediment bacteria from sites in Manila Bay were isolated via a double selective enrichment method using sterilized low-density polyethylene (LDPE) sheets as the sole carbon source. Ten isolates were identified to belong to the genera Halomonas, Bacillus, Alteromonas, Photobacterium, and Aliishimia based on 16S rRNA gene phylogeny, and majority of the taxa found exhibit a surface-associated lifestyle. Isolates were then tested for their ability to colonize polyethylene (PE) through co-incubation with LDPE sheets for 60 days. Growth of colonies in crevices, formation of cell-shaped pits, and increased roughness of the surface indicate physical deterioration. Fourier-transform infrared (FT-IR) spectroscopy revealed significant changes in the functional groups and bond indices on LDPE sheets separately co-incubated with the isolates, demonstrating that different species potentially target different substrates of the photo-oxidized polymer backbone. Understanding the activity of primo-colonizing bacteria on the plastic surface can provide insights on the possible mechanisms used to make plastic more bioavailable for other species, and their implications on the fate of plastics in the marine environment.
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Affiliation(s)
- Justine Marey S Bitalac
- The Marine Science Institute, University of the Philippines Diliman, 1101 Quezon City, Philippines; Microbiology Division, Institute of Biological Sciences, College of Arts and Sciences, University of the Philippines Los Baños, 4031 Laguna, Philippines
| | - Nacita B Lantican
- Microbiology Division, Institute of Biological Sciences, College of Arts and Sciences, University of the Philippines Los Baños, 4031 Laguna, Philippines
| | - Norchel Corcia F Gomez
- The Marine Science Institute, University of the Philippines Diliman, 1101 Quezon City, Philippines; Microbiology Division, Institute of Biological Sciences, College of Arts and Sciences, University of the Philippines Los Baños, 4031 Laguna, Philippines
| | - Deo Florence L Onda
- The Marine Science Institute, University of the Philippines Diliman, 1101 Quezon City, Philippines.
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14
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Marín A, Feijoo P, de Llanos R, Carbonetto B, González-Torres P, Tena-Medialdea J, García-March JR, Gámez-Pérez J, Cabedo L. Microbiological Characterization of the Biofilms Colonizing Bioplastics in Natural Marine Conditions: A Comparison between PHBV and PLA. Microorganisms 2023; 11:1461. [PMID: 37374962 DOI: 10.3390/microorganisms11061461] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 05/22/2023] [Accepted: 05/26/2023] [Indexed: 06/29/2023] Open
Abstract
Biodegradable polymers offer a potential solution to marine pollution caused by plastic waste. The marine biofilms that formed on the surfaces of poly(lactide acid) (PLA) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) were studied. Bioplastics were exposed for 6 months to marine conditions in the Mediterranean Sea, and the biofilms that formed on their surfaces were assessed. The presence of specific PLA and PHBV degraders was also studied. PHBV showed extensive areas with microbial accumulations and this led to higher microbial surface densities than PLA (4.75 vs. 5.16 log CFU/cm2). Both polymers' surfaces showed a wide variety of microbial structures, including bacteria, fungi, unicellular algae and choanoflagellates. A high bacterial diversity was observed, with differences between the two polymers, particularly at the phylum level, with over 70% of bacteria affiliated to three phyla. Differences in metagenome functions were also detected, revealing a higher presence of proteins involved in PHBV biodegradation in PHBV biofilms. Four bacterial isolates belonging to the Proteobacteria class were identified as PHBV degraders, demonstrating the presence of species involved in the biodegradation of this polymer in seawater. No PLA degraders were detected, confirming its low biodegradability in marine environments. This was a pilot study to establish a baseline for further studies aimed at comprehending the marine biodegradation of biopolymers.
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Affiliation(s)
- Anna Marín
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Av. de Vicent Sos Baynat s/n, Castelló de la Plana, 12071 Castelló, Spain
| | - Patricia Feijoo
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Av. de Vicent Sos Baynat s/n, Castelló de la Plana, 12071 Castelló, Spain
| | - Rosa de Llanos
- MicroBIO, Universitat Jaume I (UJI), Av. de Vicent Sos Baynat s/n, Castelló de la Plana, 12071 Castelló, Spain
| | - Belén Carbonetto
- Microomics Systems S.L., IIB Sant Pau, C/Sant Quintí, 77-79, 08041 Barcelona, Spain
| | | | - José Tena-Medialdea
- IMEDMAR-UCV Institute of Environment and Marine Science Research, Universidad Católica de Valencia, Av. del Port, 15, 03710 Calpe, Spain
| | - José R García-March
- IMEDMAR-UCV Institute of Environment and Marine Science Research, Universidad Católica de Valencia, Av. del Port, 15, 03710 Calpe, Spain
| | - José Gámez-Pérez
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Av. de Vicent Sos Baynat s/n, Castelló de la Plana, 12071 Castelló, Spain
| | - Luis Cabedo
- Polymers and Advanced Materials Group (PIMA), Universitat Jaume I (UJI), Av. de Vicent Sos Baynat s/n, Castelló de la Plana, 12071 Castelló, Spain
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15
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Sun Y, Wu M, Zang J, Du L, Huang M, Chen C, Wang J. Plastisphere microbiome: Methodology, diversity, and functionality. IMETA 2023; 2:e101. [PMID: 38868423 PMCID: PMC10989970 DOI: 10.1002/imt2.101] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/11/2023] [Accepted: 03/16/2023] [Indexed: 06/14/2024]
Abstract
Broad topics of the plastisphere in various environments are reviewed, including its methodologies, diversity, functionality, and outlook.
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Affiliation(s)
- Yuanze Sun
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental SciencesChina Agricultural UniversityBeijingChina
| | - Mochen Wu
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental SciencesChina Agricultural UniversityBeijingChina
| | - Jingxi Zang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental SciencesChina Agricultural UniversityBeijingChina
| | - Linna Du
- College of Advanced Materials EngineeringJiaxing Nanhu UniverisityJiaxingChina
| | - Muke Huang
- China International Engineering Consulting CorporationBeijingChina
| | - Cheng Chen
- China International Engineering Consulting CorporationBeijingChina
| | - Jie Wang
- Beijing Key Laboratory of Farmland Soil Pollution Prevention and Remediation, College of Resources and Environmental SciencesChina Agricultural UniversityBeijingChina
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16
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Zhang W, Wan W, Liu X, Yang Y, Liu M. Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics. MICROBIAL ECOLOGY 2023; 85:1179-1189. [PMID: 35355087 DOI: 10.1007/s00248-022-02000-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 03/17/2022] [Indexed: 05/10/2023]
Abstract
Core microbiota is shared microbial taxa within the same habitat, which is important for understanding the stable and consistent components of the complex microbial assembly. However, information on the microplastic core bacteria from the river ecosystems is poor. Here, we investigated the composition and function of microplastic core bacteria from the Three Gorges Reservoir area along the approximate 662 km of the Yangtze River via full-length 16S rRNA gene sequencing, compared with those in water, sediment, and soil. The results showed that the spatial turnover of bacterial communities in four habitats supported deterministic processes dominated by niche differentiation, which shaped their core bacteria. The composition and function of microplastic core bacteria were significantly different from those in the other three habitats. Rhodobacteraceae was the main component of microplastic core bacteria, while the main component of core bacteria in water, sediment, and soil were Burkholderiaceae (21.90%), Burkholderiaceae (5.01%), Nitrosomonadaceae (4.61%), respectively. Furthermore, microplastic core bacteria had stronger geographic limitations along the Yangtze River in the Three Gorges Reservoir area. Stronger geographic limitations shaped the rapid community turnover and a potentially more connected network for the microplastic core bacteria than water, sediment, and soil. More importantly, microplastic core bacteria had strong potential functions of drug resistance and could cause risks to ecosystems and human health. Microplastic core bacteria were mainly influenced by sediment core bacteria, although the bacteria colonizing on microplastics could be from all the contact environments and original sources. These findings provide important insights into the composition, function, and association of microplastic core bacteria with their surrounding environment.
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Affiliation(s)
- Weihong Zhang
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Wenjie Wan
- Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, 430074, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaoning Liu
- State Key Laboratory of Water Resources and Hydropower Engineering Science, Wuhan University, Wuhan, 430072, China
| | - Yuyi Yang
- State Key Laboratory of Water Resources and Hydropower Engineering Science, Wuhan University, Wuhan, 430072, China.
- Center of the Plant Ecology, Core Botanical Gardens, Wuhan Botanical Garden Chinese Academy of Sciences, Lumo Road No.1, Wuchang District, Wuhan, 430074, China.
| | - Minxia Liu
- College of Forestry, Shanxi Agricultural University, Taigu County, 030801, China
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17
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Martínez-Campos S, González-Pleiter M, Rico A, Schell T, Vighi M, Fernández-Piñas F, Rosal R, Leganés F. Time-course biofilm formation and presence of antibiotic resistance genes on everyday plastic items deployed in river waters. JOURNAL OF HAZARDOUS MATERIALS 2023; 443:130271. [PMID: 36351347 DOI: 10.1016/j.jhazmat.2022.130271] [Citation(s) in RCA: 10] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2022] [Revised: 10/17/2022] [Accepted: 10/25/2022] [Indexed: 06/16/2023]
Abstract
The plastisphere has been widely studied in the oceans; however, there is little information on how living organisms interact with the plastisphere in freshwater ecosystems, and particularly on how this interaction changes over time. We have characterized, over one year, the evolution of the eukaryotic and bacterial communities colonizing four everyday plastic items deployed in two sites of the same river with different anthropogenic impact. α-diversity analyses showed that site had a significant role in bacterial and eukaryotic diversity, with the most impacted site having higher values of the Shannon diversity index. β-diversity analyses showed that site explained most of the sample variation followed by substrate type (i.e., plastic item) and time since first colonization. In this regard, core microbiomes/biomes in each plastic at 1, 3, 6 and 12 months could be identified at genus level, giving a global overview of the evolution of the plastisphere over time. The measured concentration of antibiotics in the river water positively correlated with the abundance of antibiotic resistance genes (ARGs) on the plastics. These results provide relevant information on the temporal dynamics of the plastisphere in freshwater ecosystems and emphasize the potential contribution of plastic items to the global spread of antibiotic resistance.
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Affiliation(s)
- Sergio Martínez-Campos
- Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, University of Alcalá, Alcalá de Henares, E-28871 Madrid, Spain
| | - Miguel González-Pleiter
- Department of Biology, Faculty of Sciences, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain
| | - Andreu Rico
- IMDEA Water Institute, Science and Technology Campus of the Universidad de Alcalá, Av. Punto Com 2, 28805 Alcalá de Henares, Madrid, Spain; Cavanilles Institute of Biodiversity and Evolutionary Biology, Universidad de Valencia, c/ Catedrático José Beltrán 2, Paterna, 46980 Valencia, Spain
| | - Theresa Schell
- IMDEA Water Institute, Science and Technology Campus of the Universidad de Alcalá, Av. Punto Com 2, 28805 Alcalá de Henares, Madrid, Spain
| | - Marco Vighi
- IMDEA Water Institute, Science and Technology Campus of the Universidad de Alcalá, Av. Punto Com 2, 28805 Alcalá de Henares, Madrid, Spain
| | - Francisca Fernández-Piñas
- Department of Biology, Faculty of Sciences, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain; Centro de Investigación en Biodiversidad y Cambio Global (CIBC-UAM), Universidad Autónoma de Madrid, C Darwin 2, 28049 Madrid, Spain
| | - Roberto Rosal
- Department of Analytical Chemistry, Physical Chemistry and Chemical Engineering, University of Alcalá, Alcalá de Henares, E-28871 Madrid, Spain
| | - Francisco Leganés
- Department of Biology, Faculty of Sciences, Universidad Autónoma de Madrid, Cantoblanco, E-28049 Madrid, Spain; Centro de Investigación en Biodiversidad y Cambio Global (CIBC-UAM), Universidad Autónoma de Madrid, C Darwin 2, 28049 Madrid, Spain.
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18
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Nguyen NHA, Marlita M, El-Temsah YS, Hrabak P, Riha J, Sevcu A. Early stage biofilm formation on bio-based microplastics in a freshwater reservoir. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159569. [PMID: 36272481 DOI: 10.1016/j.scitotenv.2022.159569] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Revised: 10/14/2022] [Accepted: 10/15/2022] [Indexed: 06/16/2023]
Abstract
Bio-based plastics (BP) produced from renewable biomass resources, such as high-density polyethylene (HDPE), polylactic acid (PLA) and poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), is currently increasing in terms of both products and applications. However, their biodegradability and environmental fate are not yet fully understood, especially in freshwaters. Here, we present the results of an in-situ study in a freshwater reservoir, where we submerged HDPE, PLA and PHBV microscale BP (mBP) in dialysis bags to enable exchange of small organic and inorganic molecules, including nutrients, with the surrounding water. After one and two months, the bacterial biofilm that formed on each mBP was characterised by 16S rRNA amplicon sequencing. After two-months, Oxalobacteraceae, Pedosphaeraceae, Flavobacteriaceae (Flavobacterium) and Chitinophagaceae (Ferruginibacter) had increased by up to four times. Both these and other common members (≥1 % relative total biomass) of the microbial community were similarly abundant on all mBP. Low-abundance (0.3-1 %) bacterial taxa, however, were significantly more diverse and differed on each mBP. Notably, some low-abundance families and genera increased on specific materials, e.g. Sphingomonadaceae on HDPE, Sphingobacteriaceae on PHBV, Gemmatimonas and Crenothrix on PLA. Overall, abundant bacteria were regarded as a pioneering community, while low-abundance bacteria were more diverse and preferred mBP types in the early stages of biofilm formation on mBP. It could be influenced by the environmental conditions, where nutrient levels and low temperatures might shape the low-abundance of attached bacterial communities than the plastic material itself.
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Affiliation(s)
- Nhung H A Nguyen
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic.
| | - Marlita Marlita
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Yehia S El-Temsah
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Centre for Biosafety, Postboks 6418, 9294 Tromsø, Norway
| | - Pavel Hrabak
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Jakub Riha
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Mechatronics, Informatics and Interdisciplinary Studies, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic
| | - Alena Sevcu
- Institute for Nanomaterials, Advanced Technologies and Innovation, Technical University of Liberec, Bendlova 1409/7, 461 17 Liberec, Czech Republic; Faculty of Science, Humanities and Education, Technical University of Liberec, Studentská 1402/2, 461 17 Liberec, Czech Republic.
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19
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Li K, Jia W, Xu L, Zhang M, Huang Y. The plastisphere of biodegradable and conventional microplastics from residues exhibit distinct microbial structure, network and function in plastic-mulching farmland. JOURNAL OF HAZARDOUS MATERIALS 2023; 442:130011. [PMID: 36155295 DOI: 10.1016/j.jhazmat.2022.130011] [Citation(s) in RCA: 65] [Impact Index Per Article: 65.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Revised: 09/13/2022] [Accepted: 09/15/2022] [Indexed: 06/16/2023]
Abstract
The inhomogeneity of plastisphere and soil may result in different microbial communities, thus potentially affecting soil functions. Biodegradable plastics offer an alternative to conventional plastics, nevertheless, the inadequate end-of-life treatment of biodegradable plastics may release more microplastics. Herein, we collected PE and PBAT/PLA microplastics in plastic-mulching farmland in Hebei, China. The bacterial communities of soil, PE and PBAT/PLA plastisphere were investigated using 16 S high-throughput sequencing. We found that the structure of bacterial communities in PBAT/PLA plastisphere were significantly distinct from PE plastisphere and soil. The alpha diversities in PBAT/PLA plastisphere were significantly lower than PE plastisphere and soil. Statistical analysis of differentially ASVs suggested that PBAT/PLA microplastics act as a filter, enriching taxa with the capability to degrade plastic polymers such as Proteobacteria and Actinobacteria. Compared to PE plastisphere, PBAT/PLA plastisphere has networks of less complexity, lower modularity, and more competitive interactions. Predicted metabolic pathways involved in human diseases, carbohydrate metabolism, amino acid metabolism, and xenobiotic biodegradation and metabolism were promoted in PBAT/PLA plastisphere, along with the facilitation in abundance of genes associated with carbon and nitrogen cycling. Our results highlighted the uniqueness of plastisphere of biodegradable microplastics from conventional microplastics and their potential impact on soil functions.
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Affiliation(s)
- Kang Li
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
| | - Weiqian Jia
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
| | - Libo Xu
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China.
| | - Mengjun Zhang
- Marine Institute for Bioresources and Environment, Peking University Shenzhen Institute, Shenzhen, Guangdong 518057, China.
| | - Yi Huang
- State Key Joint Laboratory of Environmental Simulation and Pollution Control, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; Marine Institute for Bioresources and Environment, Peking University Shenzhen Institute, Shenzhen, Guangdong 518057, China.
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20
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Amaneesh C, Anna Balan S, Silpa PS, Kim JW, Greeshma K, Aswathi Mohan A, Robert Antony A, Grossart HP, Kim HS, Ramanan R. Gross Negligence: Impacts of Microplastics and Plastic Leachates on Phytoplankton Community and Ecosystem Dynamics. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:5-24. [PMID: 36534053 DOI: 10.1021/acs.est.2c05817] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Plastic debris is an established environmental menace affecting aquatic systems globally. Recently, microplastics (MP) and plastic leachates (PL) have been detected in vital human organs, the vascular system, and in vitro animal studies positing severe health hazards. MP and PL have been found in every conceivable aquatic ecosystem─from open oceans and deep sea floors to supposedly pristine glacier lakes and snow covered mountain catchment sites. Many studies have documented the MP and PL impacts on a variety of aquatic organisms, whereby some exclusively focus on aquatic microorganisms. Yet, the specific MP and PL impacts on primary producers have not been systematically analyzed. Therefore, this review focuses on the threats posed by MP, PL, and associated chemicals on phytoplankton, their comprehensive impacts at organismal, community, and ecosystem scales, and their endogenous amelioration. Studies on MP- and PL-impacted individual phytoplankton species reveal the production of reactive oxygen species, lipid peroxidation, physical damage of thylakoids, and other physiological and metabolic changes, followed by homo- and heteroaggregations, ultimately eventuating in decreased photosynthesis and primary productivity. Likewise, analyses of the microbial community in the plastisphere show a radically different profile compared to the surrounding planktonic diversity. The plastisphere also enriches multidrug-resistant bacteria, cyanotoxins, and pollutants, accelerating microbial succession, changing the microbiome, and thus, affecting phytoplankton diversity and evolution. These impacts on cellular and community scales manifest in changed ecosystem dynamics with widespread bottom-up and top-down effects on aquatic biodiversity and food web interactions. These adverse effects─through altered nutrient cycling─have "knock-on" impacts on biogeochemical cycles and greenhouse gases. Consequently, these impacts affect provisioning and regulating ecosystem services. Our citation network analyses (CNA) further demonstrate dire effects of MP and PL on all trophic levels, thereby unsettling ecosystem stability and services. CNA points to several emerging nodes indicating combined toxicity of MP, PL, and their associated hazards on phytoplankton. Taken together, our study shows that ecotoxicity of plastic particles and their leachates have placed primary producers and some aquatic ecosystems in peril.
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Affiliation(s)
- C Amaneesh
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
| | - Shankari Anna Balan
- Centre for Ecology and Hydrology, Maclean Building, Benson Lane, Wallingford, Oxfordshire OX10 8BB, United Kingdom
- Wageningen University & Research, P.O. Box 8000, 6700 EA, Wageningen, Netherlands
| | - P S Silpa
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
| | - Ji Won Kim
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, Korea University of Science and Technology (UST), 34113, Daejeon, Republic of Korea
| | - Kozhumal Greeshma
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
| | - A Aswathi Mohan
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
| | - Aiswarya Robert Antony
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
| | - Hans-Peter Grossart
- Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Department of Plankton and Microbial Ecology, 12587 Berlin, Germany
- Potsdam University, Institute of Biochemistry and Biology, 14469 Potsdam, Germany
| | - Hee-Sik Kim
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
- Department of Environmental Biotechnology, KRIBB School of Biotechnology, Korea University of Science and Technology (UST), 34113, Daejeon, Republic of Korea
| | - Rishiram Ramanan
- Sustainable Resources Laboratory, Department of Environmental Science, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
- Cell Factory Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 34141, Republic of Korea
- Centre for Policy Research & Governance, Central University of Kerala, Tejaswini Hills, Periya, Kasaragod, Kerala 671316, India
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21
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Santos FA, Diório GR, Guedes CCF, Fernandino G, Giannini PCF, Angulo RJ, de Souza MC, César-Oliveira MAF, Dos Santos Oliveira AR. Plastic debris forms: Rock analogues emerging from marine pollution. MARINE POLLUTION BULLETIN 2022; 182:114031. [PMID: 35969903 DOI: 10.1016/j.marpolbul.2022.114031] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 07/14/2022] [Accepted: 08/02/2022] [Indexed: 06/15/2023]
Abstract
Continuous input of plastic litter in ocean and coastal environments achieved alarming levels that are exposing new settings in natural systems. While novel plastic debris pollution, with rock-like appearance, has been reported worldwide, fundamentally geological analyses are still lacking. We surveyed the first occurrence of multiple associated plastic debris on a single outcrop located in a remote site (Trindade Island, SE Atlantic Ocean). Even though all plastic debris forms consisted of polypropylene and polyethylene, through a sedimentary approach (cross section, macro, and micro analyses) distinct types were identified. We detected plastiglomerates, geogenic analogous to conglomerates, divided into in situ and clastic types, and formed over beach sediment. We identified plastistones as a new type with homogeneous composition (lacking incorporated materials), geogenic-looking igneous rocks, divided into in situ and clastic types, and formed over rock surfaces. We linked pyroplastics, geogenic analogous to clasts, to clastic plastiglomerates/plastistones, therefore representing clastic types of plastic debris forms. This association was correlated in a depositional system model, which suggests that plastic debris forms are rock synthetic equivalents in which humans act as depositional and post-depositional agents.
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Affiliation(s)
- Fernanda Avelar Santos
- Laboratório de Estudos Costeiros, Programa de Pós-graduação em Geologia, Universidade Federal do Paraná, Centro Politécnico, Caixa Postal 19001, 81531-970 Curitiba, Paraná, Brazil.
| | - Giovana Rebelo Diório
- Laboratório de Análise de Bacias, Programa de Pós-graduação em Geologia, Universidade Federal do Paraná, Centro Politécnico, Caixa Postal 19001, 81531-970 Curitiba, Paraná, Brazil
| | - Carlos Conforti Ferreira Guedes
- Laboratório de Estudos Costeiros, Programa de Pós-graduação em Geologia, Universidade Federal do Paraná, Centro Politécnico, Caixa Postal 19001, 81531-970 Curitiba, Paraná, Brazil
| | - Gerson Fernandino
- Centro de Estudos Costeiros, Limnológicos e Marinhos, Departamento Interdisciplinar, Campus Litoral Norte, Universidade Federal do Rio Grande do Sul, Av. Tramandaí, 976, 95625-000 Imbé, RS, Brazil
| | - Paulo C F Giannini
- Universidade de São Paulo, Instituto de Geociências, Rua dos lagos 562, 05508-080, SP, São Paulo, Brazil
| | - Rodolfo José Angulo
- Laboratório de Estudos Costeiros, Programa de Pós-graduação em Geologia, Universidade Federal do Paraná, Centro Politécnico, Caixa Postal 19001, 81531-970 Curitiba, Paraná, Brazil
| | - Maria Cristina de Souza
- Laboratório de Estudos Costeiros, Programa de Pós-graduação em Geologia, Universidade Federal do Paraná, Centro Politécnico, Caixa Postal 19001, 81531-970 Curitiba, Paraná, Brazil
| | - Maria Aparecida Ferreira César-Oliveira
- Laboratório de Química de Polímeros e Síntese Orgânica, Departamento de Química, Universidade Federal do Paraná, Caixa Postal 19032, 81531-980 Curitiba, Paraná, Brazil
| | - Angelo Roberto Dos Santos Oliveira
- Laboratório de Química de Polímeros e Síntese Orgânica, Departamento de Química, Universidade Federal do Paraná, Caixa Postal 19032, 81531-980 Curitiba, Paraná, Brazil
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22
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Vaksmaa A, Egger M, Lüke C, Martins PD, Rosselli R, Asbun AA, Niemann H. Microbial communities on plastic particles in surface waters differ from subsurface waters of the North Pacific Subtropical Gyre. MARINE POLLUTION BULLETIN 2022; 182:113949. [PMID: 35932724 DOI: 10.1016/j.marpolbul.2022.113949] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2022] [Revised: 07/08/2022] [Accepted: 07/11/2022] [Indexed: 06/15/2023]
Abstract
The long-term fate of plastics in the ocean and their interactions with marine microorganisms remain poorly understood. In particular, the role of sinking plastic particles as a transport vector for surface microbes towards the deep sea has not been investigated. Here, we present the first data on the composition of microbial communities on floating and suspended plastic particles recovered from the surface to the bathypelagic water column (0-2000 m water depth) of the North Pacific Subtropical Gyre. Microbial community composition of suspended plastic particles differed from that of plastic particles afloat at the sea surface. However, in both compartments, a diversity of hydrocarbon-degrading bacteria was identified. These findings indicate that microbial community members initially present on floating plastics are quickly replaced by microorganisms acquired from deeper water layers, thus suggesting a limited efficiency of sinking plastic particles to vertically transport microorganisms in the North Pacific Subtropical Gyre.
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Affiliation(s)
- Annika Vaksmaa
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands.
| | - Matthias Egger
- The Ocean Cleanup, Rotterdam, the Netherlands; Egger Research and Consulting, St. Gallen, Switzerland
| | - Claudia Lüke
- Radboud University, Department of Microbiology, Nijmegen, the Netherlands
| | | | - Riccardo Rosselli
- Departamento de Fisiología, Genética y Microbiología, Facultad de Ciencias, Universidad de Alicante, Spain; LABAQUA S.A.U, C/Dracma 16-18, Pol. Ind. Las Atalayas, 03114 Alicante, Spain
| | - Alejandro Abdala Asbun
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands
| | - Helge Niemann
- Department of Marine Microbiology & Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, 't Horntje, the Netherlands; Department of Earth Sciences, Faculty of Geosciences, Utrecht University, Utrecht, the Netherlands
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23
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Kelly MR, Whitworth P, Jamieson A, Burgess JG. Bacterial colonisation of plastic in the Rockall Trough, North-East Atlantic: An improved understanding of the deep-sea plastisphere. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 305:119314. [PMID: 35447252 DOI: 10.1016/j.envpol.2022.119314] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 04/12/2022] [Accepted: 04/13/2022] [Indexed: 05/12/2023]
Abstract
Plastic pollution has now been found within multiple ecosystems across the globe. Characterisation of microbial assemblages associated with marine plastic, or the so-called 'plastisphere', has focused predominantly on plastic in the epipelagic zone. Whether this community includes taxa that are consistently enriched on plastic compared to surrounding non plastic surfaces is unresolved, as are the ecological implications. The deep sea is likely a final sink for most of the plastic entering the ocean, yet there is limited information on microbial colonisation of plastic at depth. The aim of this study was to investigate deep-sea microbial communities associated with polystyrene (PS) and polyurethane (PU) with Bath stone used as a control. The substrates (n = 15) were deployed in the Rockall Trough (Atlantic), and recovered 420 days later from a depth of 1796 m. To characterise the bacterial communities, 16S rRNA genes were sequenced using the Illumina MiSeq platform. A dominant core microbiome (taxa shared across all substrates) comprised 8% of total ASVs (amplicon sequence variant) and accounted for 92% of the total community reads. This suggests that many commonly reported members of the plastisphere are simply opportunistic which freely colonise any hard surface. Transiently associated species consisted of approximately 7% of the total community. Thirty genera were enriched on plastic (P < 0.05), representing 1% of the total community. The discovery of novel deep-sea enriched taxa included Aurantivirga, Algivirga, IheB3-7, Spirosoma, HTCC5015, Ekhidna and Calorithrix on PS and Candidatus Obscuribacter, Haloferula, Marine Methylotrophic Group 3, Aliivibrio, Tibeticola and Dethiosulfatarculus on PU. This small fraction of the microbiome include taxa with unique metabolic abilities and show how bacterial communities can be shaped by plastic pollution at depth. This study outlines a novel approach in categorising the plastisphere to elucidate the ecological implications of enriched taxa that show an affinity for colonising plastic.
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Affiliation(s)
- Max R Kelly
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom.
| | - Paul Whitworth
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom.
| | - Alan Jamieson
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom; Minderoo-UWA Deep Sea Research Centre, University of Western Australia, Oceans Institute, IOMRC Building, 35 Stirling Highway, Perth, WA, 6009, Australia.
| | - J Grant Burgess
- School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, NE1 7RU, United Kingdom.
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24
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Kumar M, Kumar R, Chaudhary DR, Jha B. An appraisal of early stage biofilm-forming bacterial community assemblage and diversity in the Arabian Sea, India. MARINE POLLUTION BULLETIN 2022; 180:113732. [PMID: 35594757 DOI: 10.1016/j.marpolbul.2022.113732] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2022] [Revised: 05/01/2022] [Accepted: 05/02/2022] [Indexed: 06/15/2023]
Abstract
The community composition and distribution of early-stage (24 h) biofilm-forming bacteria on two different surfaces (glass slide and polystyrene plastic slide) at three different locations (Diu, Alang and Sikka) were studied using a culture-dependent and next-generation sequencing (NGS) approach in the Arabian Sea, Gujarat, India. The most dominant phyla observed using the NGS approach were the Proteobacteria among the sampling sites. Gammaproteobacteria class dominated both the surfaces among the sites and accounted for 46.7% to 89.2% of total abundance. The culture-dependent analysis showed Proteobacteria and Firmicutes as the dominant phyla on the surfaces within the sampling sites. During the initial colonization, hydrocarbon-degrading bacterial strains have also attached to the surfaces. The outcome of this study would be of great importance for targeting the early stage biofilm-forming and hydrocarbon-degrading bacterial isolates may help to degrade plastic in the marine environment.
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Affiliation(s)
- Madhav Kumar
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India
| | - Raghawendra Kumar
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India
| | - Doongar R Chaudhary
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.
| | - Bhavanath Jha
- CSIR - Central Salt and Marine Chemicals Research Institute, G. B. Bhavnagar, Gujarat 364 002, India.
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25
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Dey S, Rout AK, Behera BK, Ghosh K. Plastisphere community assemblage of aquatic environment: plastic-microbe interaction, role in degradation and characterization technologies. ENVIRONMENTAL MICROBIOME 2022; 17:32. [PMID: 35739580 PMCID: PMC9230103 DOI: 10.1186/s40793-022-00430-4] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Accepted: 06/14/2022] [Indexed: 05/03/2023]
Abstract
It is undeniable that plastics are ubiquitous and a threat to global ecosystems. Plastic waste is transformed into microplastics (MPs) through physical and chemical disruption processes within the aquatic environment. MPs are detected in almost every environment due to their worldwide transportability through ocean currents or wind, which allows them to reach even the most remote regions of our planet. MPs colonized by biofilm-forming microbial communities are known as the ''plastisphere". The revelation that this unique substrate can aid microbial dispersal has piqued interest in the ground of microbial ecology. MPs have synergetic effects on the development, transportation, persistence, and ecology of microorganisms. This review summarizes the studies of plastisphere in recent years and the microbial community assemblage (viz. autotrophs, heterotrophs, predators, and pathogens). We also discussed plastic-microbe interactions and the potential sources of plastic degrading microorganisms. Finally, it also focuses on current technologies used to characterize those microbial inhabitants and recommendations for further research.
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Affiliation(s)
- Sujata Dey
- Aquatic Environmental Biotechnology and Nanotechnology Division, ICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, West Bengal, 700120, India
| | - Ajaya Kumar Rout
- Aquatic Environmental Biotechnology and Nanotechnology Division, ICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, West Bengal, 700120, India
| | - Bijay Kumar Behera
- Aquatic Environmental Biotechnology and Nanotechnology Division, ICAR-Central Inland Fisheries Research Institute, Barrackpore, Kolkata, West Bengal, 700120, India.
| | - Koushik Ghosh
- Aquaculture Laboratory, Department of Zoology, The University of Burdwan, Golapbag, Burdwan, West Bengal, 713104, India.
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26
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Increased Diversity of Rhizosphere Bacterial Community Confers Adaptability to Coastal Environment for Sapium sebiferum Trees. FORESTS 2022. [DOI: 10.3390/f13050667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Sapium sebiferum (L.) Roxb. is an economically important tree in eastern Asia, and it exhibits many traits associated with good forestation species in coastal land. However, scarce research has been conducted to elucidate the effects of rhizosphere bacterial diversity on the adaptability and viability of S. sebiferum trees grown in the coastal environment. Field trials were conducted, and rhizosphere soil samples were collected from typical coastal and forestry nursery environments. Rhizosphere bacterial communities were evaluated using 16S rRNA pyrosequencing. A total of 43 bacterial phyla were detected in all the coastal and nursery rhizospheric soil samples. Relatively higher rhizosphere community diversity was found in coastal field-grown trees. Proteobacteria, Acidobacteriota, Bacteroidota, Chloroflex, and Gemmatimonadota were dominant bacterial phyla in rhizosphere communities of tallow trees. However, the rare groups in the coastal rhizosphere soils, with a relative abundance lower than 1%, including Latescibacterota, Methylomirabilota, NB1-j, and Nitrospirota, were largely absent in the nursery field-grown tree’s rhizosphere soils. LEfSe analysis identified a total of 43 bacterial groups that were more significantly abundant in the coastal rhizosphere environment than in that of forestry nursery grown trees. Further, our cladogram analysis identified Nitrospirota, Methylomirabilota, NB1-j, and Latescibacterota as biomarkers for the coastal environment at the phylum taxonomic level. These results suggested that the adaptability of S. sebiferum trees in coastal environment might be promoted by rhizosphere microbial interactions. Complex tree–microbe interactions might enhance the resistance of the trees to coastal environment, partially by recruiting certain bacterial microbiome species, which is of high saline-alkali resistance.
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Carr CM, de Oliveira BFR, Jackson SA, Laport MS, Clarke DJ, Dobson ADW. Identification of BgP, a Cutinase-Like Polyesterase From a Deep-Sea Sponge-Derived Actinobacterium. Front Microbiol 2022; 13:888343. [PMID: 35495686 PMCID: PMC9039725 DOI: 10.3389/fmicb.2022.888343] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 03/17/2022] [Indexed: 11/13/2022] Open
Abstract
Many marine bacteria produce extracellular enzymes that degrade complex molecules to facilitate their growth in environmental conditions that are often harsh and low in nutrients. Marine bacteria, including those inhabiting sea sponges, have previously been reported to be a promising source of polyesterase enzymes, which have received recent attention due to their potential ability to degrade polyethylene terephthalate (PET) plastic. During the screening of 51 marine bacterial isolates for hydrolytic activities targeting ester and polyester substrates, a Brachybacterium ginsengisoli B129SM11 isolate from the deep-sea sponge Pheronema sp. was identified as a polyesterase producer. Sequence analysis of genomic DNA from strain B129SM11, coupled with a genome "mining" strategy, allowed the identification of potential polyesterases, using a custom database of enzymes that had previously been reported to hydrolyze PET or other synthetic polyesters. This resulted in the identification of a putative PET hydrolase gene, encoding a polyesterase-type enzyme which we named BgP that shared high overall similarity with three well-characterized PET hydrolases-LCC, TfCut2, and Cut190, all of which are key enzymes currently under investigation for the biological recycling of PET. In silico protein analyses and homology protein modeling offered structural and functional insights into BgP, and a detailed comparison with Cut190 revealed highly conserved features with implications for both catalysis and substrate binding. Polyesterase activity was confirmed using an agar-based polycaprolactone (PCL) clearing assay, following heterologous expression of BgP in Escherichia coli. This is the first report of a polyesterase being identified from a deep-sea sponge bacterium such as Brachybacterium ginsengisoli and provides further insights into marine-derived polyesterases, an important family of enzymes for PET plastic hydrolysis. Microorganisms living in association with sponges are likely to have increased exposure to plastics and microplastics given the wide-scale contamination of marine ecosystems with these plastics, and thus they may represent a worthwhile source of enzymes for use in new plastic waste management systems. This study adds to the growing knowledge of microbial polyesterases and endorses further exploration of marine host-associated microorganisms as a potentially valuable source of this family of enzymes for PET plastic hydrolysis.
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Affiliation(s)
- Clodagh M. Carr
- School of Microbiology, University College Cork, Cork, Ireland
- SSPC-SFI Research Centre for Pharmaceuticals, University College Cork, Cork, Ireland
| | - Bruno Francesco Rodrigues de Oliveira
- School of Microbiology, University College Cork, Cork, Ireland
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
- Departamento de Microbiologia e Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Niterói, Brazil
| | - Stephen A. Jackson
- School of Microbiology, University College Cork, Cork, Ireland
- Environmental Research Institute, University College Cork, Cork, Ireland
| | - Marinella Silva Laport
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | - David J. Clarke
- School of Microbiology, University College Cork, Cork, Ireland
| | - Alan D. W. Dobson
- School of Microbiology, University College Cork, Cork, Ireland
- SSPC-SFI Research Centre for Pharmaceuticals, University College Cork, Cork, Ireland
- Environmental Research Institute, University College Cork, Cork, Ireland
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28
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Zhurina MV, Bogdanov KI, Gannesen AV, Mart’yanov SV, Plakunov VK. Microplastics as a New Ecological Niche For Multispecies Microbial Biofilms within the Plastisphere. Microbiology (Reading) 2022. [DOI: 10.1134/s0026261722020126] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
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29
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Metcalf R, Oliver DM, Moresco V, Quilliam RS. Quantifying the importance of plastic pollution for the dissemination of human pathogens: The challenges of choosing an appropriate 'control' material. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 810:152292. [PMID: 34896491 DOI: 10.1016/j.scitotenv.2021.152292] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Revised: 11/26/2021] [Accepted: 12/05/2021] [Indexed: 06/14/2023]
Abstract
Discarded plastic wastes in the environment are serious challenges for sustainable waste management and for the delivery of environmental and public health. Plastics in the environment become rapidly colonised by microbial biofilm, and importantly this so-called 'plastisphere' can also support, or even enrich human pathogens. The plastisphere provides a protective environment and could facilitate the increased survival, transport and dissemination of human pathogens and thus increase the likelihood of pathogens coming into contact with humans, e.g., through direct exposure at beaches or bathing waters. However, much of our understanding about the relative risks associated with human pathogens colonising environmental plastic pollution has been inferred from taxonomic identification of pathogens in the plastisphere, or laboratory experiments on the relative behaviour of plastics colonised by human pathogens. There is, therefore, a pressing need to understand whether plastics play a greater role in promoting the survival and dispersal of human pathogens within the environment compared to other substrates (either natural materials or other pollutants). In this paper, we consider all published studies that have detected human pathogenic bacteria on the surfaces of environmental plastic pollution and critically discuss the challenges of selecting an appropriate control material for plastisphere experiments. Whilst it is clear there is no 'perfect' control material for all plastisphere studies, understanding the context-specific role plastics play compared to other substrates for transferring human pathogens through the environment is important for quantifying the potential risk that colonised plastic pollution may have for environmental and public health.
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Affiliation(s)
- Rebecca Metcalf
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK.
| | - David M Oliver
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Vanessa Moresco
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
| | - Richard S Quilliam
- Biological and Environmental Sciences, Faculty of Natural Sciences, University of Stirling, Stirling, FK9 4LA, UK
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30
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Vidal‐Verdú À, Latorre‐Pérez A, Molina‐Menor E, Baixeras J, Peretó J, Porcar M. Living in a bottle: Bacteria from sediment-associated Mediterranean waste and potential growth on polyethylene terephthalate. Microbiologyopen 2022; 11:e1259. [PMID: 35212483 PMCID: PMC8802158 DOI: 10.1002/mbo3.1259] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 12/06/2021] [Indexed: 12/16/2022] Open
Abstract
Ocean pollution is a worldwide environmental challenge that could be partially tackled through microbial applications. To shed light on the diversity and applications of the bacterial communities that inhabit the sediments trapped in artificial containers, we analyzed residues (polyethylene terephthalate [PET] bottles and aluminum cans) collected from the Mediterranean Sea by scanning electron microscopy and next generation sequencing. Moreover, we set a collection of culturable bacteria from the plastisphere that were screened for their ability to use PET as a carbon source. Our results reveal that Proteobacteria are the predominant phylum in all the samples and that Rhodobacteraceae, Woeseia, Actinomarinales, or Vibrio are also abundant in these residues. Moreover, we identified marine isolates with enhanced growth in the presence of PET: Aquimarina intermedia, Citricoccus spp., and Micrococcus spp. Our results suggest that the marine environment is a source of biotechnologically promising bacterial isolates that may use PET or PET additives as carbon sources.
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Affiliation(s)
- Àngela Vidal‐Verdú
- Institute for Integrative Systems Biology (I2SysBio)University of Valencia‐CSICPaternaSpain
| | | | - Esther Molina‐Menor
- Institute for Integrative Systems Biology (I2SysBio)University of Valencia‐CSICPaternaSpain
| | - Joaquin Baixeras
- Cavanilles Institute of Biodiversity and Evolutionary BiologyUniversity of ValenciaPaternaSpain
| | - Juli Peretó
- Institute for Integrative Systems Biology (I2SysBio)University of Valencia‐CSICPaternaSpain
- Darwin Bioprospecting Excellence S.L.PaternaSpain
- Department of Biochemistry and Molecular BiologyUniversity of ValenciaBurjassotSpain
| | - Manuel Porcar
- Institute for Integrative Systems Biology (I2SysBio)University of Valencia‐CSICPaternaSpain
- Darwin Bioprospecting Excellence S.L.PaternaSpain
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Du Y, Liu X, Dong X, Yin Z. A review on marine plastisphere: biodiversity, formation, and role in degradation. Comput Struct Biotechnol J 2022; 20:975-988. [PMID: 35242288 PMCID: PMC8861569 DOI: 10.1016/j.csbj.2022.02.008] [Citation(s) in RCA: 55] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Revised: 02/11/2022] [Accepted: 02/11/2022] [Indexed: 12/20/2022] Open
Abstract
The pollution of plastic waste has become an increasingly serious environmental crisis. Recently, plastic has been detected in various kinds of environments, even in human tissues, which is an increasing threat to the ecosystems and humans. In the ocean, the plastic waste is eventually fragmentized into microplastics (MPs) under the disruption of physical and chemical processes. MPs are colonized by microbial communities such as fungi, diatoms, and bacteria, which form biofilms on the surface of the plastic called “plastisphere”. In this review, we summarize the studies related to microorganisms in the plastisphere in recent years and describe the microbial species in the plastisphere, mainly including bacteria, fungi, and autotrophs. Secondly, we explore the interactions between MPs and the plastisphere. The depth of MPs in the ocean and the nutrients in the surrounding seawater can have a great impact on the community structure of microorganisms in the plastisphere. Finally, we discuss the types of MP-degrading bacteria in the ocean, and use the “seed bank” theory to speculate on the potential sources of MP-degrading microorganisms. Challenges and future research prospects are also discussed.
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Affiliation(s)
- Yuhui Du
- MOE International Joint Research Laboratory on Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, PR China
- Key Laboratory of Molecular Medicine and Biotherapy, School of Life Science, Beijing Institute of Technology, Beijing, PR China
| | - Xinbei Liu
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, College of Resources and Environment, Shandong Agricultural University, Tai’an, PR China
| | - Xusheng Dong
- Ruminant Nutrition and Physiology Laboratory, College of Animal Science and Technology, Shandong Agricultural University, Tai’an, PR China
| | - Zhiqiu Yin
- National Engineering Research Center for Efficient Utilization of Soil and Fertilizer Resources, College of Resources and Environment, Shandong Agricultural University, Tai’an, PR China
- Corresponding author.
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