Linkages of microbial community structure and root exudates: Evidence from microbial nitrogen limitation in soils of crop families

The proliferation of beneficial bacteria influences the soil C, N, and P cycling in the soybean-maize intercropping system

Soybean-maize intercropping system can improve the utilization rate of farmland and the sustainability of crop production systems. However, there is a significant gap in understanding the interaction mechanisms between soil carbon (C), nitrogen (N), and phosphorus (P) cycling functional genes, rhizosphere microorganisms, and nutrient availability. To reveal the key microorganisms associated with soil nutrient utilization and C, N, and P cycling function in the soybean-maize intercropping system, we investigated the changes in soil properties, microbial community structure, and abundance of functional genes for C, N, and P cycling under soybean-maize intercropping and monocropping at different fertility stages in a pot experiment. We found that there was no significant difference in the rhizosphere microbial community between soybean-maize intercropping and monocropping at the seeding stage. As the reproductive period progressed, differences in microbial community structure between intercropping and monocropping gradually became significant, manifesting the advantages of intercropping. During the intercropping process of soybean and maize, the relative abundance of beneficial bacteria in soil rhizosphere significantly increased, particularly Streptomycetaceae and Pseudomonadaceae. Moreover, the abundances of C, N, and P cycling functional genes, such as abfA, mnp, rbcL, pmoA (C cycling), nifH, nirS-3, nosZ-2, amoB (N cycling), phoD, and ppx (P cycling), also increased significantly. Redundancy analysis and correlation analysis showed that Streptomycetaceae and Pseudomonadaceae were significantly correlated with soil properties and C, N, and P cycling functional genes. In brief, soybean and maize intercropping can change the structure of microbial community and promote the proliferation of beneficial bacteria in the soil rhizosphere. The accumulation of these beneficial bacteria increased the abundance of C, N, and P cycling functional genes in soil and enhanced the ability of plants to fully utilize environmental nutrients and promoted growth.

Biochar application alters soil metabolites and nitrogen cycle-related microorganisms in a soybean continuous cropping system

Biochar application is a promising practice to enhance soil fertility. However, it is unclear how field-aged biochar affects the soil metabolites and microbial communities in soybean fields. Here, the rhizosphere soil performance after amending with biochar addition rates at 0 (CK), 20 (B20), 40 (B40), and 60 t ha-1 (B60) was examined via a five-year in-situ field experiment based on a soybean continuous cropping system. Untargeted metabolomics and metagenomics analysis techniques were applied to study the regulatory mechanism of biochar on soybean growth from metabolomics and N cycle microbiology perspectives. We found that the contents of soil total N (TN), available N (Ava N), NH4+-N, and NO3--N were significantly increased with biochar addition amounts by 20.0-65.7 %, 3.6-10.7 %, 29.5-57.1 %, and 24.4-46.7 %, respectively. The B20, B40, and B60 triggered 259 (236 were up-regulated and 23 were down-regulated), 236 (220 were up-regulated and 16 were down-regulated), and 299 (264 were up-regulated and 35 were down-regulated) differential metabolites, respectively. Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis and topology analysis demonstrated that differential metabolites were highly enriched in seven metabolic pathways such as Oxidative phosphorylation and Benzoxazinoid biosynthesis. Moreover, ten differential metabolites were up-regulated in all three treatments with biochar. Biochar treatments decreased the Nitrospira abundance in soybean rhizosphere soil while increasing Bradyrhizobium abundance significantly in B60. Mantel test revealed that as the biochar addition rate grows, the correlation between Nitrospira and soil properties other than NO3--N became stronger. In conclusion, the co-application of biochar with fertilizers is a feasible and effective way to improve soil N supply, even though biochar has undergone field aging. This work offers new insights into the variations in soil metabolites and microbial communities associated with N metabolism processes under biochar addition in soybean continuous cropping soils.

Effect of EDDS on the rhizosphere ecology and microbial regulation of the Cd-Cr contaminated soil remediation using king grass combined with Piriformospora indica

The negative impacts of soil heavy metals composite pollution on agricultural production and human health are becoming increasingly prevalent. The applications of green chelating agents and microorganisms have emerged as promising alternate methods for enhancing phytoremediation. The regulatory effects of root secretion composition, microbial carbon source utilization, key gene expression, and soil microbial community structure were comprehensively analyzed through a combination of HPLC, Biolog EcoPlates, qPCR, and high-throughput screening techniques. The application of EDDS resulted in a favorable rhizosphere ecological environment for the king grass Piriformospora indica, characterized by a decrease in soil pH by 0.41 units, stimulation of succinic acid and fumaric acid secretion, and an increase in carbon source metabolic activity of amino acids and carbohydrates. Consequently, this improvement enhanced the bioavailability of Cd/Cr and increased the biomass of king grass by 25.7%. The expression of dissimilatory iron-reducing bacteria was significantly upregulated by 99.2%, while there was no significant difference in Clostridium abundance. Furthermore, the richness of the soil rhizosphere fungal community (Ascomycota: 45.8%, Rozellomycota: 16.7%) significantly increased to regulate the proportion of tolerant microbial dominant groups, promoting the improvement of Cd/Cr removal efficiency (Cd: 23.4%, Cr: 18.7%). These findings provide a theoretical basis for the sustainable development of chelating agent-assisted plants-microorganisms combined remediation of heavy metals in soil.

Influence of Fertilization on Growth and Lead Content of Pepper under Lead Stress

To investigate the effect of fertilization on Pb content in vegetables, pepper was planted in L1645 (the 5 influencing factors are fertilizers (N, P, K), organic fertilizers (sheep manure) and Pb2+; the 4 levels are blank, low, medium and high; a total of 16 treatments) pot orthogonal experiment. The effects of fertilizers on the growth and Pb content in various parts of pepper under Pb stress were analyzed. The results showed that: (1) The Pb content in pepper fruit ranged from 0.011 mg·kg-1 to 0.085 mg·kg-1, which did not exceed the limit value (0.1 mg·kg-1) in the National Standard for Food Safety-Limit of Contaminants in Food (GB2762-2017); (2) The effect order of fertilization on pepper fruit weight was P2O5 > sheep manure > N > K2O; The horizontal combination of factors that promoted the maximum fruit weight of pepper was N (0.15 g·kg-1), P2O5 (0.225 g·kg-1), K2O (0.15 g·kg-1) and sheep manure (9 g·kg-1); (3) The order of fertilizer effects on Pb content in pepper fruit was Pb2+ > K2O > N = sheep manure > P2O5; the factor level combination that resulted in the maximum Pb content in pepper fruits was N (0.15 g·kg-1), P2O5 (0 g·kg-1), K2O (0.45 g·kg-1), sheep manure (6 g·kg-1) and Pb2+ (350 mg·kg-1); (4) Based on the soil fertility characteristics of Urumqi, the recommended optimal fertilizer application rate was: high phosphorus fertilizer P2O5 (495 kg·hm-2), low-level potassium fertilizer K2O (330 kg·hm-2), medium-level nitrogen fertilizer N (660 kg·hm-2) (or low-level nitrogen fertilizer N (330 kg·hm-2) + high-level organic manure sheep manure (19,800 kg·hm-2), which can achieve high yield while ensuring that the Pb content in the fruits does not exceed the standard. Strengthening control of effective and reasonable fertilization methods in Urumqi agricultural land is helpful to reduce the Pb content in vegetables.