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Babar S, Baloch A, Qasim M, Wang J, Wang X, Abd-Elkader AM, El-Desouki Z, Xia X, Jiang C. Unraveling the synergistic effect of biochar and potassium solubilizing bacteria on potassium availability and rapeseed growth in acidic soil. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2025; 380:125109. [PMID: 40138938 DOI: 10.1016/j.jenvman.2025.125109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2024] [Revised: 03/20/2025] [Accepted: 03/20/2025] [Indexed: 03/29/2025]
Abstract
Potassium (K) is an essential macronutrient for plant growth. However, its bioavailability is low in acidic soils. Excessive K fertilization deteriorates the soil health, thus highlighting the need for sustainable alternatives. In previous studies, biochar application has been proven to be an effective amendment. Meanwhile, various potassium solubilizing bacteria (KSB) have been identified in soil that contributes to K bioavailability. However, their interaction under combine (co) application in acidic soil and its effects on K availability remain poorly understood. Therefore, a pot experiment was conducted to investigate the synergistic effect of co-application of rice straw biochar (BC) and KSB consortium on K availability to promote rapeseed growth. The treatment plan consisted of CK (control), recommended K fertilizer, 2 % BC (2 % w/w), KSB consortium, KSB consortium + 2 % BC (2 % w/w). Results of soil analysis conducted after crop maturity showed that co-application of 2 % BC and KSB consortium significantly improved the soil pH and organic matter contents by 0.62 and 12.52 units respectively, relative to CK. Meanwhile, soil available nutrients were greatly enhanced, as available K content increased by 52.1 %, which indicated that co-application of 2 % BC and KSB consortium could facilitate the better conversion of different forms of soil K and make it available for plant uptake. Furthermore, it also improved extracellular enzymatic activities (26.7-71.6 %) and soil bacterial community (Actinobacteriota and Firmicutes). These improvements greatly enhanced plant biomass (46 %) and yield (31 %). Overall results proved that co-application of 2 % BC and KSB effectively enhanced K availability for sustainable plant growth. Still, there is a need to identify the most efficient KSB strains that, in conjugation with BC, reduce the K fertilizer usage.
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Affiliation(s)
- Saba Babar
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Amanullah Baloch
- National Key Laboratory of Crop Genetic Improvement and College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, PR China.
| | - Muhammad Qasim
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Jiyuan Wang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Xiangling Wang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Ali M Abd-Elkader
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China; Department of Agricultural Botany Faculty of Agriculture, Ain Shams University, Cario, 11241, Egypt.
| | - Zeinab El-Desouki
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Xiaoyang Xia
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
| | - Cuncang Jiang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, 430070, Hubei, PR China.
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Wang X, Alami MM, Gong S, Cheng Q, Chen C, Li X, Zhong S, He Z, Chen D, Feng S, Chen S, Shu S. Utilizing Microbial Inoculants to Alleviate Continuous Cropping Obstacles: Insights into the Metabolites and Transcriptomic Responses of Pinellia ternata. Metabolites 2025; 15:189. [PMID: 40137154 PMCID: PMC11943613 DOI: 10.3390/metabo15030189] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2025] [Revised: 02/18/2025] [Accepted: 03/08/2025] [Indexed: 03/27/2025] Open
Abstract
Pinellia ternata (Thunb.) Breit is a widely used medicinal herb in Traditional Chinese Medicine (TCM). Still, its sustainable cultivation is threatened by continuous cropping obstacles, which disrupt soil ecosystems, reduce yield, and degrade quality. Objectives: This study explores the potential of microbial inoculants to mitigate these challenges through integrated metabolomic and transcriptomic analyses. Methods: Soil samples from fields with and without continuous cropping issues were used to compare the effects of microbial inoculants on the secondary metabolism and gene expression of P. ternata. Results and Discussion: Metabolomic profiling identified 20,969 metabolites, with significant changes in lipid-like molecules (22.2%), organic acids (9.1%), and phenylpropanoids (7.0%) under microbial treatment. Notable increases in phenylalanine and caffeic acid levels were observed in microbial-inoculated plants. Correspondingly, transcriptomic analysis revealed the upregulation of phenylalanine ammonia-lyase (PAL) and other stress-related genes, confirming the metabolic shifts. Clustering and machine learning analyses highlighted the critical roles of metabolites and genes in enhancing plant resilience. Microbial inoculants improved secondary metabolite production. Implications: These findings provide valuable insights into the mechanisms of microbial-plant interactions and establish a sustainable approach for cultivating P. ternata, addressing the challenges of continuous cropping while improving crop productivity and quality.
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Affiliation(s)
- Xinyu Wang
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Mohammad Murtaza Alami
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Shuqi Gong
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Qinglin Cheng
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Chaoqun Chen
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Xinghui Li
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Shumei Zhong
- Sinopharm Zhonglian Pharmaceutical Co., Ltd., Wuhan 430070, China
| | - Zhigang He
- Hubei South Crown Chinese Herbs Science & Technology Co., Ltd., Qianjiang 433131, China
| | - Dilin Chen
- Planting Industry Management Office, Department of Agriculture and Rural Affairs in Hubei Province, Wuhan 430070, China
| | - Shengqiu Feng
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
| | - Shenghu Chen
- Fruit and Tea Industry Management Office, Department of Agriculture and Rural Affairs in Hubei Province, Wuhan 430070, China
| | - Shaohua Shu
- College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; (X.W.)
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Figueiredo JEF, Diniz GDFD, Marins MS, Silva FC, Ribeiro VP, Lanza FE, de Oliveira-Paiva CA, Cruz-Magalhães V. Bacillus velezensis CNPMS-22 as biocontrol agent of pathogenic fungi and plant growth promoter. Front Microbiol 2025; 16:1522136. [PMID: 40109964 PMCID: PMC11921153 DOI: 10.3389/fmicb.2025.1522136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2024] [Accepted: 01/10/2025] [Indexed: 03/22/2025] Open
Abstract
Introduction Bacillus velezensis is a ubiquitous bacterium with potent antifungal activity and a plant growth promoter. This study investigated the potential of B. velezensis CNPMS-22 as a biocontrol agent against phytopathogenic fungi under diverse experimental conditions and its potential as a plant growth promoter. Genome sequencing and analysis revealed putative genes involved in these traits. Methods This research performed in vitro experiments to evaluate the CNPMS-22 antagonistic activity against 10 phytopathogenic fungi using dual culture in plate (DCP) and inverted sealed plate assay (ISP). Greenhouse and field tests evaluated the ability of CNPMS-22 to control Fusarium verticillioides in maize plants in vivo. The CNPMS-22 genome was sequenced using the Illumina HiSeq 4,000 platform, and genomic analysis also included manual procedures to identify genes of interest accurately. Results CNPMS-22 showed antifungal activity in vitro against all fungi tested, with notable reductions in mycelial growth in both DCP and ISP experiments. In the ISP, volatile organic compounds (VOCs) produced by CNPMS-22 also altered the mycelium coloration of some fungi. Scanning electron microscopy revealed morphological alterations in the hyphae of F. verticillioides in contact with CNPMS-22, including twisted, wrinkled, and ruptured hyphae. Eight cluster candidates for synthesizing non-ribosomal lipopeptides and ribosomal genes for extracellular lytic enzymes, biofilm, VOCs, and other secondary metabolites with antifungal activity and plant growth promoters were identified by genomic analysis. The greenhouse and field experiments showed that seed treatment with CNPMS-22 reduced Fusarium symptoms in plants and increased maize productivity. Conclusion Our findings highlight the CNPMS-22's potential as bioinoculant for fungal disease control and plant growth with valuable implications for a sustainable crop productivity.
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Affiliation(s)
| | | | - Mikaely Sousa Marins
- Soil Microbiology Laboratory, Embrapa Maize and Sorghum Research Center, Sete Lagoas, Brazil
| | | | | | | | | | - Valter Cruz-Magalhães
- Microbial Ecology Laboratory, Embrapa Maize and Sorghum Research Center, Sete Lagoas, Brazil
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Liu Y, Shi A, Chen Y, Xu Z, Liu Y, Yao Y, Wang Y, Jia B. Beneficial microorganisms: Regulating growth and defense for plant welfare. PLANT BIOTECHNOLOGY JOURNAL 2025; 23:986-998. [PMID: 39704146 PMCID: PMC11869181 DOI: 10.1111/pbi.14554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2024] [Revised: 11/23/2024] [Accepted: 12/03/2024] [Indexed: 12/21/2024]
Abstract
Beneficial microorganisms (BMs) promote plant growth and enhance stress resistance. This review summarizes how BMs induce growth promotion by improving nutrient uptake, producing growth-promoting hormones and stimulating root development. How BMs enhance disease resistance and help protect plants from abiotic stresses has also been explored. Growth-defense trade-offs are known to affect the ability of plants to survive under unfavourable conditions. This review discusses studies demonstrating that BMs regulate growth-defense trade-offs through microbe-associated molecular patterns and multiple pathways, including the leucine-rich repeat receptor-like kinase pathway, abscisic acid signalling pathway and specific transcriptional factor regulation. This multifaceted relationship underscores the significance of BMs in sustainable agriculture. Finally, the need for integration of artificial intelligence to revolutionize biofertilizer research has been highlighted. This review also elucidates the cutting-edge advancements and potential of plant-microbe synergistic microbial agents.
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Affiliation(s)
- Yan Liu
- Xianghu LaboratoryHangzhouChina
- Jiangsu Provincial Key Lab of Solid Organic Waste UtilizationNanjing Agricultural UniversityNanjingChina
| | | | - Yue Chen
- Xianghu LaboratoryHangzhouChina
- Horticulture Research InstituteZhejiang Academy of Agricultural SciencesHangzhouChina
| | - Zhihui Xu
- Jiangsu Provincial Key Lab of Solid Organic Waste UtilizationNanjing Agricultural UniversityNanjingChina
| | - Yongxin Liu
- Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at ShenzhenChinese Academy of Agricultural SciencesShenzhenChina
| | - Yanlai Yao
- Xianghu LaboratoryHangzhouChina
- Institute of Environment, Resource, Soil and FertiliserZhejiang Academy of Agricultural SciencesHangzhouChina
| | - Yiming Wang
- Department of Plant Pathology, Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of EducationNanjing Agricultural UniversityNanjingChina
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Zhao F, Mao Y, Yang J, Yang S, Guan X, Wang Z, Huang T. Enhancing Bacillus thuringiensis Performance: Fertilizer-Driven Improvements in Biofilm Formation, UV Protection, and Pest Control Efficacy. Microorganisms 2025; 13:499. [PMID: 40142392 PMCID: PMC11945023 DOI: 10.3390/microorganisms13030499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2025] [Revised: 02/19/2025] [Accepted: 02/20/2025] [Indexed: 03/28/2025] Open
Abstract
This study investigated the effects of fertilizers on the biofilm formation, ultraviolet (UV) resistance, and insecticidal activity of Bacillus thuringiensis (Bt). Bacillus thuringiensis, a widely used microbial pesticide, has a minimal environmental impact and is highly effective against specific pests but is susceptible to environmental factors in field applications. Bacterial biofilms provide protection for Bt, enhancing its survival and functionality in the environment. However, the mechanisms by which fertilizers regulate the characteristics of microbial pesticides and enhance biofilm formation are not well understood. This study evaluated the effects of six fertilizers on the bacterial biofilm formation, the UV resistance, and the insecticidal activities of Bt wettable powders. The results demonstrated that fertilizers significantly enhanced the performance of three Bt preparations (Lv'an, Kang'xin, and Lu'kang). A compound fertilizer with 8.346 g/L of KCl, 2.751 g/L of ZnSO4·7H2O, and 25.681 μL/mL of humic acid was identified by response surface optimization, achieving the maximum BBF formation with OD595 value of 2.738. Furthermore, KH2PO4, HA, and ZnSO4·7H2O notably improved the survivability of Bt preparations under prolonged UV exposure, with the compound fertilizer providing the greatest protection. What's more, fertilizers reduced the LC50 values of all Bt preparations, with the compound fertilizer decreasing the LC50 of the Lv'an Bt wettable powder to 0.139 g/L, a 3.12-fold increase in efficacy. This study demonstrated that fertilizers significantly enhance the UV resistance and insecticidal activity of Bt wettable powders by promoting bacterial biofilm formation. Herein, this study provides new strategies and theoretical support for Bt applications in modern sustainable agriculture.
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Affiliation(s)
| | | | | | | | | | - Zixuan Wang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Key Laboratory of Biopesticide and Chemical Biology of Ministry of Education, Biopesticide Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (F.Z.); (Y.M.); (J.Y.); (S.Y.); (X.G.)
| | - Tianpei Huang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Key Laboratory of Biopesticide and Chemical Biology of Ministry of Education, Biopesticide Research Center, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (F.Z.); (Y.M.); (J.Y.); (S.Y.); (X.G.)
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Machida-Sano I, Koizumi H, Yoshitake S. A novel scaffold for biofilm formation by soil microbes using iron-cross-linked alginate gels. Biosci Biotechnol Biochem 2025; 89:473-479. [PMID: 39674811 DOI: 10.1093/bbb/zbae197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2024] [Accepted: 12/10/2024] [Indexed: 12/16/2024]
Abstract
This study aimed to evaluate the suitability of alginate gels, specifically ferric-ion-cross-linked alginate (Fe-alginate) and calcium-ion-cross-linked alginate (Ca-alginate), as scaffolds for soil microbial attachment and biofilm formation in soil. Staining with crystal violet and observations with scanning electron microscopy showed that microorganisms formed biofilms on Fe-alginate surfaces in the soil. When the soil was incubated with Fe-alginate, microbial biomass, estimated by adenosine triphosphate content, increased not only in the Fe-alginate but also in the surrounding soil. The weight of Ca-alginate in the soil decreased with time owing to chemical dissolution. However, the weight of Fe-alginate in the soil did not decrease, likely because it was protected by the microbial biofilm that formed on its surface. These results demonstrate that the use of Fe-alginate, in contrast to Ca-alginate, as a scaffold may allow for more efficient use of soil microbial functions in agriculture and bioremediation.
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Affiliation(s)
- Ikuko Machida-Sano
- Faculty of Education and Integrated Arts and Sciences, Waseda University, Shinjuku-ku, Tokyo, Japan
| | - Hiroshi Koizumi
- Faculty of Education and Integrated Arts and Sciences, Waseda University, Shinjuku-ku, Tokyo, Japan
| | - Shinpei Yoshitake
- Faculty of Education and Integrated Arts and Sciences, Waseda University, Shinjuku-ku, Tokyo, Japan
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Zhao X, Yu X, Gao J, Qu J, Borjigin Q, Meng T, Li D. Using Klebsiella sp. and Pseudomonas sp. to Study the Mechanism of Improving Maize Seedling Growth Under Saline Stress. PLANTS (BASEL, SWITZERLAND) 2025; 14:436. [PMID: 39942998 PMCID: PMC11820787 DOI: 10.3390/plants14030436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Revised: 01/27/2025] [Accepted: 01/30/2025] [Indexed: 02/16/2025]
Abstract
The increasing salinization of cultivated soil worldwide has led to a significant reduction in maize production. Using saline-alkaline-tolerant growth-promoting bacteria (PGPR) in the rhizosphere can significantly improve the saline tolerance of maize and ensure the stability of maize yields, which has become a global research hotspot. This study screened salt-tolerant microorganisms Klebsiella sp. (GF2) and Pseudomonas sp. (GF7) from saline soil to clarify the mechanism in improving the saline tolerance of maize. In this study, different application treatments (GF2, GF7, and GF2 + GF7) and no application (CK) were set up to explore the potential ecological relationships between the saline tolerance of maize seedlings, soil characteristics, and microorganisms. The results showed that co-occurrence network and Zi-Pi analysis identified Klebsiella and Pseudomonas as core microbial communities in the rhizosphere soil of maize seedlings grown in saline soil. The deterministic process of microbial assembly mainly controlled the bacterial community, whereas bacteria and fungi were governed by random processes. The application of saline-alkaline-resistant PGPR under saline stress significantly promoted maize seedling growth, increased the activity of soil growth-promoting enzymes, and enhanced total nitrogen, soil organic carbon, and microbial carbon and nitrogen contents. Additionally, it reduced soil salt and alkali ion concentrations [electrical conductivity (EC) and exchangeable Na+]. Among them, GF2 + GF7 treatment had the best effect, indicating that saline-alkaline-tolerant PGPR could directly or indirectly improve the saline tolerance of maize seedlings by improving the rhizosphere soil ecological environment. EC was the determining factor to promote maize seedling growth under saline-alkaline stress (5.56%; p < 0.01). The results provided an important theoretical reference that deciphers the role of soil factors and microecology in enhancing the saline tolerance of maize.
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Affiliation(s)
- Xiaoyu Zhao
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
- Institute of Maize Research, Inner Mongolia Academy of Agricultural & Animal Husbandry Sciences, Hohhot 010031, China
| | - Xiaofang Yu
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
| | - Julin Gao
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
| | - Jiawei Qu
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
| | - Qinggeer Borjigin
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
| | - Tiantian Meng
- College of Agronomy, Hebei Agricultural University, Baoding 071000, China
| | - Dongbo Li
- Inner Mongolia Autonomous Region Engineering Research Center for In-Situ Maize Stalk Returning Microbiology, Inner Mongolia Agricultural University, Hohhot 010010, China; (X.Z.)
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Villano F, Balestrini R, Nerva L, Chitarra W. Harnessing microbes as sun cream against high light stress. THE NEW PHYTOLOGIST 2025; 245:450-457. [PMID: 39462775 DOI: 10.1111/nph.20206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 10/03/2024] [Indexed: 10/29/2024]
Abstract
Plants rely on solar energy for growth through photosynthesis, yet excessive light intensity can induce physiological damage. Despite the considerable harm, inadequate attention has been directed toward understanding how plant-associated microorganisms mitigate this stress, and the impact of high light intensity on plant microbial communities remains underexplored. Through this Viewpoint, we aim to highlight the potential of microbial communities to enhance plant resilience and understand how light stress can shape plant microbiome. A full understanding of these dynamics is essential to design strategies that take advantage of microbial assistance to plants under light stress and to effectively manage the impact of changing light conditions on plant-microbe interactions.
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Affiliation(s)
- Filippo Villano
- Research Centre for Viticulture and Enology, Council for Agricultural Research and Economics, (CREA-VE), Via XXVIII Aprile 26, Conegliano (TV), 31015, Italy
| | - Raffaella Balestrini
- Institute of Biosciences and Bioresources (IBBR), National Research Council (IBBR-CNR), Via G. Amendola 165/A, Bari (BA), 70126, Italy
| | - Luca Nerva
- Research Centre for Viticulture and Enology, Council for Agricultural Research and Economics, (CREA-VE), Via XXVIII Aprile 26, Conegliano (TV), 31015, Italy
| | - Walter Chitarra
- Research Centre for Viticulture and Enology, Council for Agricultural Research and Economics, (CREA-VE), Via XXVIII Aprile 26, Conegliano (TV), 31015, Italy
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Argentel-Martínez L, Peñuelas-Rubio O, Herrera-Sepúlveda A, González-Aguilera J, Sudheer S, Salim LM, Lal S, Pradeep CK, Ortiz A, Sansinenea E, Hathurusinghe SHK, Shin JH, Babalola OO, Azizoglu U. Biotechnological advances in plant growth-promoting rhizobacteria for sustainable agriculture. World J Microbiol Biotechnol 2024; 41:21. [PMID: 39738995 DOI: 10.1007/s11274-024-04231-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2024] [Accepted: 12/13/2024] [Indexed: 01/02/2025]
Abstract
The rhizosphere, the soil zone surrounding plant roots, serves as a reservoir for numerous beneficial microorganisms that enhance plant productivity and crop yield, with substantial potential for application as biofertilizers. These microbes play critical roles in ecological processes such as nutrient recycling, organic matter decomposition, and mineralization. Plant growth-promoting rhizobacteria (PGPR) represent a promising tool for sustainable agriculture, enabling green management of crop health and growth, being eco-friendly alternatives to replace chemical fertilizers and pesticides. In this sense, biotechnological advancements respecting genomics and gene editing have been crucial to develop microbiome engineering which is pivotal in developing microbial consortia to improve crop production. Genome mining, which involves comprehensive analysis of the entire genome sequence data of PGPR, is crucial for identifying genes encoding valuable bacterial enzymes and metabolites. The CRISPR-Cas system, a cutting-edge genome-editing technology, has shown significant promise in beneficial microbial species. Advances in genetic engineering, particularly CRISPR-Cas, have markedly enhanced grain output, plant biomass, resistance to pests, and the sensory and nutritional quality of crops. There has been a great advance about the use of PGPR in important crops; however, there is a need to go further studying synthetic microbial communities, microbiome engineering, and gene editing approaches in field trials. This review focuses on future research directions involving several factors and topics around the use of PGPR putting special emphasis on biotechnological advances.
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Affiliation(s)
- Leandris Argentel-Martínez
- Tecnológico Nacional de México/Instituto Tecnológico del Valle del Yaqui, CP: 85260, Bácum, Sonora, Mexico.
| | - Ofelda Peñuelas-Rubio
- Tecnológico Nacional de México/Instituto Tecnológico del Valle del Yaqui, CP: 85260, Bácum, Sonora, Mexico
| | - Angélica Herrera-Sepúlveda
- Tecnológico Nacional de México/Instituto Tecnológico del Valle del Yaqui, CP: 85260, Bácum, Sonora, Mexico
| | - Jorge González-Aguilera
- Department of Agronomy, Universidad Estadual de Mato Grosso Do Sul (UEMS), Cassilândia, MS, 79540-000, Brazil
| | - Surya Sudheer
- Institute of Ecology and Earth Sciences, Department of Botany, University of Tartu, 51005, Tartu, Estonia
| | - Linu M Salim
- Faculty of Fisheries Engineering, Kerala University of Fisheries and Ocean Studies, Cochin, India
| | - Sunaina Lal
- Department of Biochemistry, Sikkim Manipal Institute of Medical Sciences, Gangtok, Sikkim, India
| | - Chittethu Kunjan Pradeep
- Microbiology Division, Jawaharlal Nehru Tropical Botanic Garden & Research Institute, Palode, Thiruvananthapuram, Kerala, 695562, India
| | - Aurelio Ortiz
- Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, C.P. 72570, Puebla, Puebla, México
| | - Estibaliz Sansinenea
- Facultad de Ciencias Químicas, Benemérita Universidad Autónoma de Puebla, C.P. 72570, Puebla, Puebla, México
| | | | - Jae-Ho Shin
- School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University, Daegu, 41566, Republic of Korea
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho, 2735, South Africa
| | - Ugur Azizoglu
- Department of Crop and Animal Production, Safiye Cikrikcioglu Vocational College, Kayseri University, Kayseri, Türkiye.
- Genome and Stem Cell Research Center, Erciyes University, Kayseri, Türkiye.
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Patel M, Islam S, Glick BR, Vimal SR, Bhor SA, Bernardi M, Johora FT, Patel A, de Los Santos Villalobos S. Elaborating the multifarious role of PGPB for sustainable food security under changing climate conditions. Microbiol Res 2024; 289:127895. [PMID: 39276501 DOI: 10.1016/j.micres.2024.127895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Revised: 08/30/2024] [Accepted: 09/01/2024] [Indexed: 09/17/2024]
Abstract
Changing climate creates a challenge to agricultural sustainability and food security by changing patterns of parameters like increased UV radiation, rising temperature, altered precipitation patterns, and higher occurrence of extreme weather incidents. Plants are vulnerable to different abiotic stresses such as waterlogging, salinity, heat, cold, and drought in their natural environments. The prevailing agricultural management practices play a major role in the alteration of the Earth's climate by causing biodiversity loss, soil degradation through chemical and physical degradation, and pollution of water bodies. The extreme usage of pesticides and fertilizers leads to climate change by releasing greenhouse gases (GHGs) and depositing toxic substances in the soil. At present, there is an urgent need to address these abiotic stresses to achieve sustainable growth in agricultural production and fulfill the rising global food demand. Several types of bacteria that are linked with plants can increase plant resistance to stress and lessen the negative effects of environmental challenges. This review aims to explore the environmentally friendly capabilities and prospects of multi-trait plant growth-promoting bacteria (PGPB) in the alleviation of detrimental impacts of harsh environmental conditions on plants.
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Affiliation(s)
- Margi Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat 384265, India.
| | - Shaikhul Islam
- Plant Pathology Division, Bangladesh Wheat and Maize Research Institute, Nashipur, Dinajpur 5200, Bangladesh.
| | - Bernard R Glick
- Department of Biology, University of Waterloo, Waterloo, ON N2L 3G1, Canada.
| | - Shobhit Raj Vimal
- Department of Botany, University of Allahabad, Prayagraj 211002, India.
| | - Sachin Ashok Bhor
- Laboratory of Plant Molecular Biology and Virology, Faculty of Agriculture, Ehime University, Matsuyama, Ehime, Japan.
| | - Matteo Bernardi
- Department of Life, Health and Environmental Sciences, University of L'Aquila, via Vetoio, Coppito 67100, Italy.
| | - Fatema Tuj Johora
- Lincoln University, Department of Sustainable Agriculture, 1570 Baltimore Pike, PA 19352, USA.
| | - Ashish Patel
- Department of Life Sciences, Hemchandracharya North Gujarat University, Patan, Gujarat 384265, India.
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11
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Han SE, Kim KY, Maung CEH. Bacillus subtilis PE7-Mediated Alleviation of Phosphate Starvation and Growth Promotion of Netted Melon ( Cucumis melo L. var. reticulatus Naud.). Microorganisms 2024; 12:2384. [PMID: 39770587 PMCID: PMC11678189 DOI: 10.3390/microorganisms12122384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 11/14/2024] [Accepted: 11/18/2024] [Indexed: 01/11/2025] Open
Abstract
Members of Bacillus species are able to enhance the level of available phosphorus (P) for plant absorption through mechanisms of P solubilization and mineralization. In our study, B. subtilis PE7 showed P-solubilizing activity in simple phosphate broth (SPB) medium, and acetic acid, iso-butyric acid, and iso-valeric acid were major organic acids responsible for the increase in soluble P and decrease in pH of SPB medium. In addition, strain PE7 released phytase on phytase-screening agar (PSA) medium, and analysis of semi-quantitative reverse transcription and polymerase chain reaction (sqRT-PCR) revealed that the phyC gene expression was the highest at 1 day after incubation. A low concentration of KH2PO4 in SPB medium induced more biofilm formation than a high concentration of KH2PO4. Strain PE7 showed swimming and swarming motilities in TY and TrA agar media. Under P starvation, inoculation with higher cell numbers of strain PE7 enhanced biomass and nutrient acquisition by melon plants, resulting in higher values of growth parameters and nutrient contents. Moreover, the persistence of bacterial cells on the root surface and in the rhizosphere of melon plants indicated colonization of the plants by strain PE7. Due to its capacity for P solubilization and mineralization, B. subtilis PE7 could be utilized as an alternative to synthetic fertilizer for P deficient-stress management in crop plantation.
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Affiliation(s)
- Seong Eun Han
- Department of Agricultural Chemistry, Environmentally-Friendly Agricultural Research Center, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea;
| | - Kil Yong Kim
- Department of Agricultural and Biological Chemistry, Environmentally-Friendly Agricultural Research Center, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea
| | - Chaw Ei Htwe Maung
- Environmentally-Friendly Agricultural Research Center, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 61186, Republic of Korea
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12
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Babar S, Baloch A, Qasim M, Wang J, Wang X, Li Y, Khalid S, Jiang C. Unearthing the soil-bacteria nexus to enhance potassium bioavailability for global sustainable agriculture: A mechanistic preview. Microbiol Res 2024; 288:127885. [PMID: 39236472 DOI: 10.1016/j.micres.2024.127885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Revised: 08/02/2024] [Accepted: 08/25/2024] [Indexed: 09/07/2024]
Abstract
Established as a plant macronutrient, potassium (K) substantially bestows plant growth and thus, global food production. It is absorbed by plants as potassium cation (K+) from soil solution, which is enriched through slow-release from soil minerals or addition of soluble fertilizers. Contribution of bioavailable K+ from soil is usually insignificant (< 2 %), although the earth's crust is rich in K-bearing minerals. However, K is fixed largely in interlayer spaces of K-bearing minerals, which can be released by K-solubilizing bacteria (KSB) such as Bacillus, Pseudomonas, Enterobacter, and Acidithiobacillus. The underlying mechanisms of K dissolution by KSB include acidolysis, ion exchange reactions, chelation, complexolysis, and release of various organic and inorganic acids such as citric, oxalic, acetic, gluconic, and tartaric acids. These acids cause disintegration of K-bearing minerals and bring K+ into soil solution that becomes available to the plants. Current literature review updates the scientific information about microbial species, factors, and mechanisms governing the bio-intrusion of K-bearing minerals. Moreover, it explores the potential of KSB not only for K-solubilization but also to enhance bioavailability of phosphorus, nitrogen, and micronutrients, as well as its other beneficial impact on plant growth. Thus, in the context of sustainable agricultural production and global food security, utilization of KSB may facilitate plant nutrient availability, conserve natural resources, and reduce environmental impacts caused by chemical fertilizers.
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Affiliation(s)
- Saba Babar
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Amanullah Baloch
- National Key Laboratory of Crop Genetic Improvement, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, PR China
| | - Muhammad Qasim
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
| | - Jiyuan Wang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Xiangling Wang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Yuxuan Li
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Sarmand Khalid
- Key Laboratory of Horticulture Plant Biology of Ministry of Education, College of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
| | - Cuncang Jiang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
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13
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Guo S, Liu Y, Yin Y, Chen Y, Jia S, Wu T, Liao J, Jiang X, Kareem HA, Li X, Pan J, Wang Y, Shen X. Unveiling the multifaceted potential of Pseudomonas khavaziana strain SR9: a promising biocontrol agent for wheat crown rot. Microbiol Spectr 2024; 12:e0071224. [PMID: 39162535 PMCID: PMC11448100 DOI: 10.1128/spectrum.00712-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2024] [Accepted: 07/12/2024] [Indexed: 08/21/2024] Open
Abstract
Fusarium pseudograminearum, a soil-borne fungus, is the cause of the devastating wheat disease known as wheat crown rot (WCR). The persistence of this pathogen in the soil and crop residues contributes to the increased occurrence and severity of WCR. Therefore, developing effective strategies to prevent and manage WCR is of great importance. In this study, we isolated a bacterial strain, designated as SR9, from the stem of wheat, that exhibited potent antagonistic effects against F. pseudograminearum, as well as the biocontrol efficacy of SR9 on WCR was quantified at 83.99% ± 0.11%. We identified SR9 as Pseudomonas khavaziana and demonstrated its potential as a plant probiotic. SR9 displayed broad-spectrum antagonism against other fungal pathogens, including Neurospora dictyophora, Botrytis californica, and Botryosphaeria dothidea. Whole-genome sequencing analysis revealed that SR9 harbored genes encoding various cell wall-degrading enzymes, cellulases, and lipases, along with antifungal metabolites, which are responsible for its antagonistic activity. Gene knockout and quantitative PCR analyses reveal that phenazine is the essential factor for antagonism. SR9 possessed genes related to auxin synthesis, flagellar biosynthesis, biofilm adhesion, and the chemotaxis system, which play pivotal roles in plant colonization and growth promotion; we also evaluated the effects of SR9 on plant growth in wheat and Arabidopsis. Our findings strongly suggest that SR9 holds great promise as a biocontrol agent for WCR in sustainable agriculture.IMPORTANCEThe escalating prevalence of wheat crown rot, primarily attributed to Fusarium pseudograminearum, necessitates the development of cost-effective and eco-friendly biocontrol strategies. While plant endophytes are recognized for their biocontrol potential, reports on effective strains targeting wheat crown rot are sparse. This study introduces the Pseudomonas khavaziana SR9 strain as an efficacious antagonist to the wheat crown rot pathogen Fusarium pseudograminearum. Demonstrating a significant reduction in wheat crown rot incidence and notable plant growth promotion, SR9 emerges as a key contributor to plant health and agricultural sustainability. Our study outlines a biological approach to tackle wheat crown rot, establishing a groundwork for innovative sustainable agricultural practices.
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Affiliation(s)
- Shengzhi Guo
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Yuqi Liu
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Yanling Yin
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
- Xinjiang Production and Construction Crops Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, College of Life Sciences, Tarim University, Xinjiang, China
| | - Yating Chen
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Siyu Jia
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Tong Wu
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Jun Liao
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Xinyan Jiang
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Hafiz Abdul Kareem
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Xuejun Li
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, College of Agronomy, Northwest A&F University, Xianyang, Shaanxi, China
| | - Junfeng Pan
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Yao Wang
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
| | - Xihui Shen
- State Key Laboratory for Crop Stress Resistance and High-Efficiency Production, Shaanxi Key Laboratory of Agricultural and Environmental Microbiology, College of Life Sciences, Northwest A&F University, Xianyang, Shaanxi, China
- Xinjiang Production and Construction Crops Key Laboratory of Protection and Utilization of Biological Resources in Tarim Basin, College of Life Sciences, Tarim University, Xinjiang, China
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14
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Iungin O, Prekrasna-Kviatkovska Y, Kalinichenko O, Moshynets O, Potters G, Sidorenko M, Savchuk Y, Mickevičius S. Endophytic Bacterial Biofilm-Formers Associated with Antarctic Vascular Plants. Microorganisms 2024; 12:1938. [PMID: 39458248 PMCID: PMC11509575 DOI: 10.3390/microorganisms12101938] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 09/15/2024] [Accepted: 09/16/2024] [Indexed: 10/28/2024] Open
Abstract
Deschampsia antarctica and Colobantus quitensis are the only two vascular plants colonized on the Antarctic continent, which is usually exposed to extreme environments. Endophytic bacteria residing within plant tissues can exhibit diverse adaptations that contribute to their ecological success and potential benefits for their plant hosts. This study aimed to characterize 12 endophytic bacterial strains isolated from these plants, focusing on their ecological adaptations and functional roles like plant growth promotion, antifungal activities, tolerance to salt and low-carbon environments, wide temperature range, and biofilm formation. Using 16S rRNA sequencing, we identified several strains, including novel species like Hafnia and Agreia. Many strains exhibited nitrogen-fixing ability, phosphate solubilization, ammonia, and IAA production, potentially benefiting their hosts. Additionally, halotolerance and carbon oligotrophy were also shown by studied bacteria. While some Antarctic bacteria remain strictly psychrophilic, others demonstrate a remarkable ability to tolerate a wider range of temperatures, suggesting that they have acquired mechanisms to cope with fluctuations in environmental temperature and developed adaptations to survive in intermediate hosts like mammals and/or birds. Such adaptations and high plasticity of metabolism of Antarctic endophytic bacteria provide a foundation for research and development of new promising products or mechanisms for use in agriculture and technology.
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Affiliation(s)
- Olga Iungin
- Department of Biotechnology, Leather and Fur, Faculty of Chemical and Biopharmaceutical Technologies, Kyiv National University of Technologies and Design, 01011 Kyiv, Ukraine;
- Biofilm Study Group, Department of Cell Regulatory Mechanisms, Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, 03143 Kyiv, Ukraine;
- Faculty of Natural Sciences, Vytautas Magnus University, 53361 Kaunas, Lithuania; (M.S.); (S.M.)
| | | | - Oleksandr Kalinichenko
- Department of Biotechnology, Leather and Fur, Faculty of Chemical and Biopharmaceutical Technologies, Kyiv National University of Technologies and Design, 01011 Kyiv, Ukraine;
| | - Olena Moshynets
- Biofilm Study Group, Department of Cell Regulatory Mechanisms, Institute of Molecular Biology and Genetics, National Academy of Sciences of Ukraine, 03143 Kyiv, Ukraine;
| | - Geert Potters
- AMACORT, Nautical Faculty, Antwerp Maritime Academy, 2030 Antwerp, Belgium;
- Department of Bioscience Engineering, University of Antwerp, 2000 Antwerp, Belgium
| | - Marina Sidorenko
- Faculty of Natural Sciences, Vytautas Magnus University, 53361 Kaunas, Lithuania; (M.S.); (S.M.)
| | - Yaroslav Savchuk
- Department of Physiology and Systematics of Micromycetes, Zabolotny Institute of Microbiology and Virology, National Academy of Sciences of Ukraine, 03143 Kyiv, Ukraine;
| | - Saulius Mickevičius
- Faculty of Natural Sciences, Vytautas Magnus University, 53361 Kaunas, Lithuania; (M.S.); (S.M.)
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15
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Wang L, Wang X, Wu H, Wang H, Lu Z. Interspecies synergistic interactions mediated by cofactor exchange enhance stress tolerance by inducing biofilm formation. mSystems 2024; 9:e0088424. [PMID: 39189769 PMCID: PMC11406921 DOI: 10.1128/msystems.00884-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 07/26/2024] [Indexed: 08/28/2024] Open
Abstract
Metabolic exchange plays a crucial role in shaping microbial community interactions and functions, including the exchange of small molecules such as cofactors. Cofactors are fundamental to enzyme catalytic activities; however, the role of cofactors in microbial stress tolerance is unclear. Here, we constructed a synergistic consortium containing two strains that could efficiently mineralize di-(2-ethylhexyl) phthalate under hyperosmotic stress. Integration of transcriptomic analysis, metabolic profiling, and a genome-scale metabolic model (GEM) facilitated the discovery of the potential mechanism of microbial interactions. Multi-omics analysis revealed that the vitamin B12-dependent methionine-folate cycle could be a key pathway for enhancing the hyperosmotic stress tolerance of synergistic consortium. Further GEM simulations revealed interspecies exchange of S-adenosyl-L-methionine and riboflavin, cofactors needed for vitamin B12 biosynthesis, which was confirmed by in vitro experiments. Overall, we proposed a new mechanism of bacterial hyperosmotic stress tolerance: bacteria might promote the production of vitamin B12 to enhance biofilm formation, and the species collaborate with each other by exchanging cofactors to improve consortium hyperosmotic stress tolerance. These findings offer new insights into the role of cofactors in microbial interactions and stress tolerance and are potentially exploitable for environmental remediation. IMPORTANCE Metabolic interactions (also known as cross-feeding) are thought to be ubiquitous in microbial communities. Cross-feeding is the basis for many positive interactions (e.g., mutualism) and is a primary driver of microbial community assembly. In this study, a combination of multi-omics analysis and metabolic modeling simulation was used to reveal the metabolic interactions of a synthetic consortium under hyperosmotic stress. Interspecies cofactor exchange was found to promote biofilm formation under hyperosmotic stress. This provides a new perspective for understanding the role of metabolic interactions in microbial communities to enhance environmental adaptation, which is significant for improving the efficiency of production activities and environmental bioremediation.
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Affiliation(s)
- Lvjing Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
- Cancer Center, Zhejiang University, Hangzhou, China
| | - Xiaoyu Wang
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
- Cancer Center, Zhejiang University, Hangzhou, China
| | - Hao Wu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
- Cancer Center, Zhejiang University, Hangzhou, China
| | - Haixia Wang
- College of Biotechnology and Bioengineering, Zhejiang University of Technology, Hangzhou, China
| | - Zhenmei Lu
- MOE Laboratory of Biosystem Homeostasis and Protection, College of Life Sciences, Zhejiang University, Hangzhou, China
- Cancer Center, Zhejiang University, Hangzhou, China
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16
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Charron‐Lamoureux V, Lebel‐Beaucage S, Pomerleau M, Beauregard PB. Rooting for success: Evolutionary enhancement of Bacillus for superior plant colonization. Microb Biotechnol 2024; 17:e70001. [PMID: 39212139 PMCID: PMC11362836 DOI: 10.1111/1751-7915.70001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Accepted: 08/11/2024] [Indexed: 09/04/2024] Open
Abstract
Many strains from the Bacillus subtilis species complex exert strong plant growth-promoting activities. However, their efficacy in relevant conditions is variable, due in part to their inability to establish a strong interaction with roots in stressful environmental conditions. Adaptative laboratory evolution (ALE) is a powerful tool to generate novel strains with traits of interest. Many Bacillus evolved isolates, stemming from ALE performed with plants, possess a stronger root colonization capacity. An in-depth analysis of these isolates also allowed the identification of key features influencing the interaction with plant roots. However, many variables can influence the outcome of these assays, and thus, caution should be taken when designing ALE destined to generate better root colonizers.
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Affiliation(s)
- Vincent Charron‐Lamoureux
- Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical SciencesUniversity of CaliforniaSan DiegoCaliforniaUSA
- Skaggs School of Pharmacy and Pharmaceutical SciencesUniversity of CaliforniaSan DiegoCaliforniaUSA
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17
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Gao L, Ma JB, Huang Y, Muhammad M, Lian HT, Shurigin V, Egamberdieva D, Li WJ, Li L. Insight into endophytic microbial diversity in two halophytes and plant beneficial attributes of Bacillus swezeyi. Front Microbiol 2024; 15:1447755. [PMID: 39268535 PMCID: PMC11391308 DOI: 10.3389/fmicb.2024.1447755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Accepted: 08/07/2024] [Indexed: 09/15/2024] Open
Abstract
This study utilized high-throughput sequencing to investigate endophytic bacteria diversity in halophytic plants Anabasis truncate (AT) and Anabasis eriopoda (AE) from the Aral Sea region. Following sequence processing, 356 Amplicon Sequence Variants (ASVs) were discovered. The abundance and variety of endophytic bacteria were higher in AT. Bacillota, Pseudomonadota, Actinomycetota, and Bacteroidota constituted the dominant in AE, whereas Pseudomonadota, Actinomycetota, Bacteroidota, and Chloroflexota constituted the dominant in AT. Biomarkers were identified through LEFSe analysis, showing host-specific patterns. PCoA indicated distinct bacterial community structures. Phylogenetic analysis revealed diverse endophytic bacteria, including potential novel taxa. PICRUSt2 predicted diverse functions for endophytic bacteria in halophytes, indicating recruitment of beneficial bacterial taxa to adapt to extreme hypersaline conditions, including plant growth-promoting, biocontrol, and halophilic/tolerant bacteria. Moreover, the evolutionary relationship, metabolic capabilities, and plant beneficial potentials of the Bacillus swezeyi strains, previously isolated from the above two halophytes, were analyzed using comparative genomic and physiological analysis. The B. swezeyi strains displayed versatile environmental adaptability, as shown by their ability to use a wide range of carbon sources and their salt tolerances. B. swezeyi possessed a wide range of enzymatic capabilities, including but not limited to proteases, cellulases, and chitinases. Comparative genomic analysis revealed that despite some variations, they shared genetic similarities and metabolic capabilities among the B. swezeyi strains. B. swezeyi strains also displayed outstanding plant-growth-promoting and antagonistic potentials, offering potential solutions to the global food crisis. This study enhances our understanding of microbial diversity in halophytes on saline-alkali land in the West Aral Sea, shedding light on the halophyte microbiome and its collaboration with hosts in highly hypersaline environments. This study also provides a scientific basis for developing high-quality microbial fertilizers and implementing sustainable agricultural practices.
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Affiliation(s)
- Lei Gao
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Jin-Biao Ma
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Xinjiang Key Laboratory of Biodiversity Conservation and Application in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Yin Huang
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Murad Muhammad
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Hai-Ting Lian
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Vyacheslav Shurigin
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Xinjiang Key Laboratory of Biodiversity Conservation and Application in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
| | - Dilfuza Egamberdieva
- Faculty of Biology, National University of Uzbekistan, Tashkent, Uzbekistan
- Institute of Fundamental and Applied Research, National Research University TIIAME, Tashkent, Uzbekistan
| | - Wen-Jun Li
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - Li Li
- State Key Laboratory of Desert and Oasis Ecology, Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
- Xinjiang Key Laboratory of Biodiversity Conservation and Application in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, China
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18
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Devendrapandi G, Balu R, Ayyappan K, Ayyamperumal R, Alhammadi S, Lavanya M, Senthilkumar R, Karthika PC. Unearthing Earth's secrets: Exploring the environmental legacy of contaminants in soil, water, and sediments. ENVIRONMENTAL RESEARCH 2024; 249:118246. [PMID: 38278509 DOI: 10.1016/j.envres.2024.118246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 12/29/2023] [Accepted: 01/17/2024] [Indexed: 01/28/2024]
Abstract
The Earth's history is documented in human civilizations, soil layers, river movement, and quiet sediments throughout millennia. This investigation explores the significant legacy of environmental toxins in these key planet components. Understanding how ancient activity shaped the terrain is crucial as mankind faces environmental issues. This interdisciplinary study uses environmental science, archaeology, and geology to uncover Earth's mysteries. It illuminates the dynamic processes that have built our globe by studying pollutants and soil, water, and sediments. This research follows human actions, both intentional and unintentional, from ancient civilizations through contemporary industrialization and their far-reaching effects. Environmental destiny examines how contaminants affect ecosystems and human health. This study of past contamination helps solve modern problems including pollution cleanup, sustainable land management, and water conservation. This review studies reminds us that our previous activities still affect the ecosystem in a society facing rapid urbanisation and industrialization. It emphasises the importance of environmental stewardship and provides a framework for making educated choices to reduce toxins in soil, water, and sediments. Discovery of Earth's secrets is not only a historical curiosity; it's a necessary step towards a sustainable and peaceful cohabitation with our home planet.
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Affiliation(s)
- Gautham Devendrapandi
- Department of Computational Biology, Institute of Bioinformatics, Saveetha School of Engineering, Saveetha Institute of Medical and Technical Sciences, Tamil Nadu, Thandalam, Chennai 602 105, India.
| | - Ranjith Balu
- Research and Development Cell, Lovely Professional University, Phagwara, 144411, India.
| | - K Ayyappan
- School of Maritime Studies of Vels Institute of Science, Technology & Advanced Studies, Chennai, India
| | - Ramamoorthy Ayyamperumal
- Key Laboratory of Western China's Environmental System, College of Earth and Environmental Sciences, Lanzhou 13 University, Lanzhou, 730000, China
| | - Salh Alhammadi
- School of Chemical Engineering, Yeungnam University, 280 Daehak-ro, Gyeongsan-si, Gyongsanbuk-do, 38541, Republic of Korea.
| | - Mahimaluru Lavanya
- Institute of Research and Development, Duy Tan University, Da Nang, 550000, Viet Nam; Faculty of Environmental and Chemical Engineering, Duy Tan University, Da Nang, 550000, Viet Nam.
| | - R Senthilkumar
- Department of Naval Architecture and Offshore Engineering, AMET University, Chennai, India
| | - P C Karthika
- Department of Physics and Nanotechnology, SRM Institute of Science and Technology, Kattankulathur, Chennai, 603203, Tamil Nadu, India.
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19
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Bhurtel A, Salifu E, Siddiqua S. Composite biomediated engineering approaches for improving problematic soils: Potentials and opportunities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 914:169808. [PMID: 38184265 DOI: 10.1016/j.scitotenv.2023.169808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 12/10/2023] [Accepted: 12/29/2023] [Indexed: 01/08/2024]
Abstract
Several conventional chemical stabilizers are used for soil stabilization, among which cement is widely adopted. However, the high energy consumption and environmental challenges associated with these stabilizers have necessitated the transition toward the adoption/deployment of eco-friendly approaches for soil stabilization. Biomediated techniques are sustainable soil improvement methods adopting less toxic microorganisms, enzymes, or polymers for cementing soil. However, these processes also have several drawbacks, such as slow hardening, environmental impact, high cost, and lack of compatibility with different types of soils. It is hypothesized that these limitations may be overcome by exploring the prospects and opportunities offered by hybrid technological approaches involving the integration of nontraditional stabilizers and microbial-induced biomineralization processes for improving problematic soils. This paper discusses selected previous studies integrating different technologies and their benefits and challenges. The emerging fungi-based bio-mediation techniques and the possibility of forming sustainable fungal-based biocomposites to improve problematic soils are also highlighted.
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Affiliation(s)
- Akanksha Bhurtel
- School of Engineering, University of British Columbia, Kelowna, BC V1V 1V7, Canada.
| | - Emmanuel Salifu
- School of Sustainable Engineering and the Built Environment, Center for Bio-Mediated and Bio-Inspired Geotechnics, Arizona State University, Tempe, AZ 85287-3005, United States of America.
| | - Sumi Siddiqua
- Faculty of Applied Science, School of Engineering, University of British Columbia, Kelowna, BC V1V 1V7, Canada.
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20
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Chakraborty S, Paidi MK, Dhinakarasamy I, Sivakumar M, Clements C, Thirumurugan NK, Sivakumar L. Adaptive mechanism of the marine bacterium Pseudomonas sihuiensis-BFB-6S towards pCO 2 variation: Insights into synthesis of extracellular polymeric substances and physiochemical modulation. Int J Biol Macromol 2024; 261:129860. [PMID: 38309406 DOI: 10.1016/j.ijbiomac.2024.129860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 01/11/2024] [Accepted: 01/29/2024] [Indexed: 02/05/2024]
Abstract
Marine bacteria can adapt to various extreme environments by the production of extracellular polymeric substances (EPS). Throughout this investigation, impact of variable pCO2 levels on the metabolic activity and physiochemical modulation in EPS matrix of marine bacterium Pseudomonas sihuiensis - BFB-6S was evaluated using a fluorescence microscope, excitation-emission matrix (EEM), 2D-Fourier transform infrared correlation spectroscopy (2D-ATR-FTIR-COS), FT-NMR and TGA-DSC. From the results at higher pCO2 levels, there was a substantial reduction in EPS production by 58-62.8 % (DW). In addition to the biochemical composition of EPS, reduction in carbohydrates (8.7-47.6 %), protein (7.1-91.5 %), and lipids (16.9-68.6 %) content were observed at higher pCO2 levels. Functional discrepancies of fluorophores (tyrosine and tryptophan-like) in EPS, speckled differently in response to variable pCO2. The 2D-ATR-FTIR-COS analysis revealed functional amides (CN, CC, CO bending, -NH bending in amines) of EPS were preferentially altered, which led to the domination of polysaccharides relevant functional groups at higher pCO2. 1H NMR analysis of EPS confirmed the absence of chemical signals from H-C-COOH of proteins, α, β anomeric protons, and acetyl group relevant region at higher pCO2 levels. These findings can contribute new insights into the influence of pCO2 on the adaptation of marine microbes in future ocean acidification scenarios.
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Affiliation(s)
- Subham Chakraborty
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India
| | - Murali Krishna Paidi
- CSIR-Central Salt and Marine Chemicals Research Institute, G. B. Marg, Bhavnagar 364002, Gujarat, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India
| | - Inbakandan Dhinakarasamy
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India.
| | - Manikandan Sivakumar
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India
| | - Clarita Clements
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India
| | - Naren Kumar Thirumurugan
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India
| | - Lakshminarayanan Sivakumar
- Centre for Ocean Research (DST-FIST Sponsored Centre), MoES-Earth Science & Technology Cell, Sathyabama Institute of Science and Technology, Chennai 600119, Tamil Nadu, India
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21
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Wang Y, Wang R, He J, Li T, Fu X, Li J, He G. Effects of varying nano-ZnO concentrations on the physiology, biochemistry, root exudate, and root microbial community of Agrostis stolonifera. ENVIRONMENTAL SCIENCE: NANO 2024; 11:4830-4846. [DOI: 10.1039/d4en00584h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/12/2025]
Abstract
This study investigates the adsorption and transport of nano-ZnO in Agrostis stolonifera, focusing on its effects on plant physiology, biochemistry, root exudate, and root microbial community.
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Affiliation(s)
- Yian Wang
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Ronghui Wang
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Jiale He
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Tao Li
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Xinyue Fu
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Jiaxin Li
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
| | - Genhe He
- School of Life Sciences, Key Laboratory of Jiangxi Province for Functional Biology and Pollution Control in Red Soil Regions, Jinggangshan University, Ji'an 343009, Jiangxi, China
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