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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: An update for 2019-2020. MASS SPECTROMETRY REVIEWS 2022:e21806. [PMID: 36468275 DOI: 10.1002/mas.21806] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
This review is the tenth update of the original article published in 1999 on the application of matrix-assisted laser desorption/ionization (MALDI) mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2020. Also included are papers that describe methods appropriate to analysis by MALDI, such as sample preparation techniques, even though the ionization method is not MALDI. The review is basically divided into three sections: (1) general aspects such as theory of the MALDI process, matrices, derivatization, MALDI imaging, fragmentation, quantification and the use of arrays. (2) Applications to various structural types such as oligo- and polysaccharides, glycoproteins, glycolipids, glycosides and biopharmaceuticals, and (3) other areas such as medicine, industrial processes and glycan synthesis where MALDI is extensively used. Much of the material relating to applications is presented in tabular form. The reported work shows increasing use of incorporation of new techniques such as ion mobility and the enormous impact that MALDI imaging is having. MALDI, although invented nearly 40 years ago is still an ideal technique for carbohydrate analysis and advancements in the technique and range of applications show little sign of diminishing.
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Affiliation(s)
- David J Harvey
- Nuffield Department of Medicine, Target Discovery Institute, University of Oxford, Oxford, UK
- Department of Chemistry, University of Oxford, Oxford, Oxfordshire, United Kingdom
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Yang X, Nguyen XC, Tran QB, Huyen Nguyen TT, Ge S, Nguyen DD, Nguyen VT, Le PC, Rene ER, Singh P, Raizada P, Ahamad T, Alshehri SM, Xia C, Kim SY, Le QV. Machine learning-assisted evaluation of potential biochars for pharmaceutical removal from water. ENVIRONMENTAL RESEARCH 2022; 214:113953. [PMID: 35934147 DOI: 10.1016/j.envres.2022.113953] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 06/01/2022] [Accepted: 07/19/2022] [Indexed: 05/27/2023]
Abstract
A popular approach to select optimal adsorbents is to perform parallel experiments on adsorbents based on an initially decided goal such as specified product purity, efficiency, or binding capacity. To screen optimal adsorbents, we focused on the max adsorption capacity of the candidates at equilibrium in this work because the adsorption capacity of each adsorbent is strongly dependent on certain conditions. A data-driven machine learning tool for predicting the max adsorption capacity (Qm) of 19 pharmaceutical compounds on 88 biochars was developed. The range of values of Qm (mean 48.29 mg/g) was remarkably large, with a high number of outliers and large variability. Modified biochars enhanced the Qm and surface area values compared with the original biochar, with a statistically significant difference (Chi-square value = 7.21-18.25, P < 0.005). K- nearest neighbors (KNN) was found to be the most optimal algorithm with a root mean square error (RMSE) of 23.48 followed by random forest and Cubist with RMSE of 26.91 and 29.56, respectively, whereas linear regression and regularization were the worst algorithms. KNN model achieved R2 of 0.92 and RMSE of 16.62 for the testing data. A web app was developed to facilitate the use of the KNN model, providing a reliable solution for saving time and money in unnecessary lab-scale adsorption experiments while selecting appropriate biochars for pharmaceutical adsorption.
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Affiliation(s)
- Xiaocui Yang
- Engineering Training Center, Nanjing Vocational University of Industry Technology, Nanjing, Jiangsu, 210023, China
| | - X Cuong Nguyen
- Center for Advanced Chemistry, Institute of Research and Development, Duy Tan University, Da Nang, 550000, Vietnam; Faculty of Environmental Chemical Engineering, Duy Tan University, Da Nang, 550000, Vietnam.
| | - Quoc B Tran
- Center for Advanced Chemistry, Institute of Research and Development, Duy Tan University, Da Nang, 550000, Vietnam; Faculty of Environmental Chemical Engineering, Duy Tan University, Da Nang, 550000, Vietnam
| | - T T Huyen Nguyen
- Faculty of Environment, The University of Danang-University of Science and Technology, Da Nang, 550000, Vietnam
| | - Shengbo Ge
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, International Innovation Center for Forest Chemicals and Materials, College of Materials Science and Engineering, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China
| | - D Duc Nguyen
- Department of Environmental Energy Engineering, Kyonggi University, Suwon, 442-760, Republic of Korea
| | - Van-Truc Nguyen
- Department of Environmental Sciences, Saigon University, Ho Chi Minh City, 700000, Vietnam
| | - Phuoc-Cuong Le
- Faculty of Environment, The University of Danang-University of Science and Technology, Da Nang, 550000, Vietnam
| | - Eldon R Rene
- Department of Environmental Engineering and Water Technology, IHE Delft Institute for Water Education, PO Box 3015, 2601 DA, Delft, the Netherlands
| | - Pardeep Singh
- School of Advanced Chemical Sciences, Shoolini University, Solan, Himachal Pradesh, 173212, India
| | - Pankaj Raizada
- School of Advanced Chemical Sciences, Shoolini University, Solan, Himachal Pradesh, 173212, India
| | - Tansir Ahamad
- Department of Chemistry, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Saad M Alshehri
- Department of Chemistry, College of Science, King Saud University, Riyadh 11451, Saudi Arabia
| | - Changlei Xia
- Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, International Innovation Center for Forest Chemicals and Materials, College of Materials Science and Engineering, Nanjing Forestry University, Nanjing, Jiangsu, 210037, China.
| | - Soo Young Kim
- Department of Materials Science and Engineering, Institute of Green Manufacturing Technology, Korea University, Seoul, 02841, Republic of Korea.
| | - Quyet Van Le
- Department of Materials Science and Engineering, Institute of Green Manufacturing Technology, Korea University, Seoul, 02841, Republic of Korea.
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