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Baukova A, Bogun A, Sushkova S, Minkina T, Mandzhieva S, Alliluev I, Jatav HS, Kalinitchenko V, Rajput VD, Delegan Y. New Insights into Pseudomonas spp.-Produced Antibiotics: Genetic Regulation of Biosynthesis and Implementation in Biotechnology. Antibiotics (Basel) 2024; 13:597. [PMID: 39061279 PMCID: PMC11273644 DOI: 10.3390/antibiotics13070597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 06/20/2024] [Accepted: 06/25/2024] [Indexed: 07/28/2024] Open
Abstract
Pseudomonas bacteria are renowned for their remarkable capacity to synthesize antibiotics, namely mupirocin, gluconic acid, pyrrolnitrin, and 2,4-diacetylphloroglucinol (DAPG). While these substances are extensively employed in agricultural biotechnology to safeguard plants against harmful bacteria and fungi, their potential for human medicine and healthcare remains highly promising for common science. However, the challenge of obtaining stable producers that yield higher quantities of these antibiotics continues to be a pertinent concern in modern biotechnology. Although the interest in antibiotics of Pseudomonas bacteria has persisted over the past century, many uncertainties still surround the regulation of the biosynthetic pathways of these compounds. Thus, the present review comprehensively studies the genetic organization and regulation of the biosynthesis of these antibiotics and provides a comprehensive summary of the genetic organization of antibiotic biosynthesis pathways in pseudomonas strains, appealing to both molecular biologists and biotechnologists. In addition, attention is also paid to the application of antibiotics in plant protection.
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Affiliation(s)
- Alexandra Baukova
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of Russian Academy of Sciences” (FRC PSCBR RAS), 142290 Pushchino, Moscow Region, Russia; (A.B.); (A.B.)
- Pushchino Branch of Federal State Budgetary Educational Institution of Higher Education “Russian Biotechnology University (ROSBIOTECH)”, 142290 Pushchino, Moscow Region, Russia
| | - Alexander Bogun
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of Russian Academy of Sciences” (FRC PSCBR RAS), 142290 Pushchino, Moscow Region, Russia; (A.B.); (A.B.)
| | - Svetlana Sushkova
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
| | - Tatiana Minkina
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
| | - Saglara Mandzhieva
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
| | - Ilya Alliluev
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
| | - Hanuman Singh Jatav
- Soil Science & Agricultural Chemistry, S.K.N. Agriculture University-Jobner, Jaipur 303329, Rajasthan, India;
| | - Valery Kalinitchenko
- Institute of Fertility of Soils of South Russia, 346493 Persianovka, Rostov Region, Russia;
- All-Russian Research Institute for Phytopathology of the Russian Academy of Sciences, Institute St., 5, 143050 Big Vyazyomy, Moscow Region, Russia
| | - Vishnu D. Rajput
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
| | - Yanina Delegan
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center “Pushchino Scientific Center for Biological Research of Russian Academy of Sciences” (FRC PSCBR RAS), 142290 Pushchino, Moscow Region, Russia; (A.B.); (A.B.)
- Academy of Biology and Biotechnology behalf D.I. Ivanovskyi, Southern Federal University, 344006 Rostov-on-Don, Russia; (S.S.); (T.M.); (S.M.); (I.A.); (V.D.R.)
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Rathore R, Forristal D, Spink J, Dowling D, Germaine KJ. Investigating the Impact of Tillage and Crop Rotation on the Prevalence of phlD-Carrying Pseudomonas Potentially Involved in Disease Suppression. Microorganisms 2023; 11:2459. [PMID: 37894117 PMCID: PMC10609274 DOI: 10.3390/microorganisms11102459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 09/27/2023] [Accepted: 09/28/2023] [Indexed: 10/29/2023] Open
Abstract
Winter oilseed rape (OSR) is becoming an increasingly popular crop in rotations as it provides a cash crop and reduces the incidence of take-all fungal disease (caused by Gaeumannomyces graminis) in subsequent wheat production. The exact mechanism of this inhibition of fungal pathogens is not fully understood; however, the selective recruitment of bacterial groups with the ability to suppress pathogen growth and reproduction is thought to play a role. Here we examine the effect of tillage practice on the proliferation of microbes that possess the phlD gene involved in the production of the antifungal compound 2,4-diacetylphloroglucinol (2,4-DAPG), in the rhizospheres of both winter oilseed rape and winter wheat grown in rotation over a two-year period. The results showed that conservation strip tillage led to a significantly greater phlD gene copy number, both in the soil and in the roots, of oilseed rape and wheat crops, whereas crop rotation of oilseed rape and wheat did not increase the phlD gene copy number in winter wheat.
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Affiliation(s)
- Ridhdhi Rathore
- EnviroCore, Dargan Research Centre, South East Technological University (SETU), R93 V960 Carlow, Ireland; (R.R.); (D.D.)
- Teagasc Agriculture and Food Development Authority, Oak Park Research Centre, R93 XE12 Carlow, Ireland; (D.F.)
| | - Dermot Forristal
- Teagasc Agriculture and Food Development Authority, Oak Park Research Centre, R93 XE12 Carlow, Ireland; (D.F.)
| | - John Spink
- Teagasc Agriculture and Food Development Authority, Oak Park Research Centre, R93 XE12 Carlow, Ireland; (D.F.)
| | - David Dowling
- EnviroCore, Dargan Research Centre, South East Technological University (SETU), R93 V960 Carlow, Ireland; (R.R.); (D.D.)
| | - Kieran J. Germaine
- EnviroCore, Dargan Research Centre, South East Technological University (SETU), R93 V960 Carlow, Ireland; (R.R.); (D.D.)
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Paliwal K, Jajoo A, Tomar RS, Prakash A, Syed A, Bright JP, Sayyed RZ. Enhancing Biotic Stress Tolerance in Soybean Affected by Rhizoctonia solani Root Rot Through an Integrated Approach of Biocontrol Agent and Fungicide. Curr Microbiol 2023; 80:304. [PMID: 37493820 DOI: 10.1007/s00284-023-03404-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2022] [Accepted: 07/05/2023] [Indexed: 07/27/2023]
Abstract
Rhizoctonia solani causes root rot in soybean, a worldwide severe concern for soybean cultivation. The fungus grows and clogs the xylem tissue of the host plant by producing numerous sclerotia, which results in disease symptoms, such as yellowing of leaves, wilt, and plant death. Overuse of chemical fungicides increases the threat of developing resistance to pathogens, reduces soil productivity, and negatively impacts the health of the soil, the environment, and humans. An integrated pest management strategy improves crop yield, profit, and safety. The present study focused on a fungicide (carbendazim) compatibility test with a biocontrol agent (Pseudomonas fluorescence). It evaluated the effect of this combined approach on photosynthetic reactions and growth in soybean in the presence of the fungal pathogen R. solani. The study showed that P. fluorescence significantly inhibited the mycelial growth of R. solani (43%) and tolerated 0.05-0.15% concentration of carbendazim. This confirms the suitability compatibility of P. fluorescence with chemical fungicides for IPM. These novel blending significantly reduced the disease incidence by about 75%, and a 72% decrease in disease severity was observed compared to pathogen control. Moreover, this combined approach has also improved plant growth, yield parameters, and photosynthetic efficiency in the presence of R. solani treated with an integrated system showed better overall growth despite being infected by the pathogen.
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Affiliation(s)
- Kiran Paliwal
- Department of Microbiology, Barkatullah University, Bhopal, 462026, India
| | - Anjana Jajoo
- School of Life Science, Devi Ahilya University, Indore, 452017, India
| | - Rupal Singh Tomar
- School of Life Science, Devi Ahilya University, Indore, 452017, India
| | - Anil Prakash
- Department of Microbiology, Barkatullah University, Bhopal, 462026, India.
| | - Asad Syed
- Department of Botany and Microbiology, College of Science, King Saud University, 11451, Riyadh, Saudi Arabia
| | - Jeberlin Prabina Bright
- Department of Soil Science and Agricultural Chemistry, Tamil Nadu Agricultural University, Agricultural College and Research Institute, Killikulam, 628 252, India
| | - R Z Sayyed
- Asian PGPR Society, Auburn Ventures, Auburn, AL, 36830, USA.
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Bano A, Waqar A, Khan A, Tariq H. Phytostimulants in sustainable agriculture. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2022. [DOI: 10.3389/fsufs.2022.801788] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The consistent use of synthetic fertilizers and chemicals in traditional agriculture has not only compromised the fragile agroecosystems but has also adversely affected human, aquatic, and terrestrial life. The use of phytostimulants is an alternative eco-friendly approach that eliminates ecosystem disruption while maintaining agricultural productivity. Phytostimulants include living entities and materials, such as microorganisms and nanomaterials, which when applied to plants or to the rhizosphere, stimulate plant growth and induce tolerance to plants against biotic and abiotic stresses. In this review, we focus on plant growth-promoting rhizobacteria (PGPR), beneficial fungi, such as arbuscular mycorrhizal fungi (AMF) and plant growth-promoting fungi (PGPF), actinomycetes, cyanobacteria, azolla, and lichens, and their potential benefits in the crop improvement, and mitigation of abiotic and biotic stresses either alone or in combination. PGPR, AMF, and PGPF are plant beneficial microbes that can release phytohormones, such as indole acetic acid (IAA), gibberellic acid (GA), and cytokinins, promoting plant growth and improving soil health, and in addition, they also produce many secondary metabolites, antibiotics, and antioxidant compounds and help to combat biotic and abiotic stresses. Their ability to act as phytostimulator and a supplement of inorganic fertilizers is considered promising in practicing sustainable agriculture and organic farming. Glomalin is a proteinaceous product, produced by AMF, involved in soil aggregation and elevation of soil water holding capacity under stressed and unstressed conditions. The negative effects of continuous cropping can be mitigated by AMF biofertilization. The synergistic effects of PGPR and PGPF may be more effective. The mechanisms of control exercised by PGPF either direct or indirect to suppress plant diseases viz. by competing for space and nutrients, mycoparasitism, antibiosis, mycovirus-mediated cross-protection, and induced systemic resistance (ISR) have been discussed. The emerging role of cyanobacterial metabolites and the implication of nanofertilizers have been highlighted in sustainable agriculture.
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Characterization and Assessment of 2, 4-Diacetylphloroglucinol (DAPG)-Producing Pseudomonas fluorescens VSMKU3054 for the Management of Tomato Bacterial Wilt Caused by Ralstonia solanacearum. Microorganisms 2022; 10:microorganisms10081508. [PMID: 35893565 PMCID: PMC9330548 DOI: 10.3390/microorganisms10081508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 05/16/2022] [Accepted: 05/17/2022] [Indexed: 12/04/2022] Open
Abstract
Microbial bio-products are becoming an appealing and viable alternative to chemical pesticides for effective management of crop diseases. These bio-products are known to have potential to minimize agrochemical applications without losing crop yield and also restore soil fertility and productivity. In this study, the inhibitory efficacy of 2,4-diacetylphloroglucinol (DAPG) produced by Pseudomonas fluorescens VSMKU3054 against Ralstonia solanacearum was assessed. Biochemical and functional characterization study revealed that P. fluorescens produced hydrogen cyanide (HCN), siderophore, indole acetic acid (IAA) and hydrolytic enzymes such as amylase, protease, cellulase and chitinase, and had the ability to solubilize phosphate. The presence of the key antimicrobial encoding gene in the biosynthesis of 2,4-diacetylphloroglucinol (DAPG) was identified by PCR. The maximum growth and antimicrobial activity of P. fluorescens was observed in king’s B medium at pH 7, 37 °C and 36 h of growth. Glucose and tryptone were found to be the most suitable carbon and nitrogen sources, respectively. DAPG was separated by silica column chromatography and identified by various methods such as UV-Vis, FT-IR, GC-MS and NMR spectroscopy. When R. solanacearum cells were exposed to DAPG at 90 µg/mL, the cell viability was decreased, reactive oxygen species (ROS) were increased and chromosomal DNA was damaged. Application of P. fluorescens and DAPG significantly reduced the bacterial wilt incidence. In addition, P. fluorescens was also found effective in promoting the growth of tomato seedlings. It is concluded that the indigenous isolate P. fluorescens VSMKU3054 could be used as a suitable biocontrol agent against bacterial wilt disease of tomato.
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Mishra J, Mishra I, Arora NK. 2,4-Diacetylphloroglucinol producing Pseudomonas fluorescens JM-1 for management of ear rot disease caused by Fusarium moniliforme in Zea mays L. 3 Biotech 2022; 12:138. [PMID: 35646503 DOI: 10.1007/s13205-022-03201-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 03/05/2022] [Indexed: 11/27/2022] Open
Abstract
Maize (Zea mays L.) is a major cereal crop grown in a large number of countries. Loss in maize yield due to biotic stresses including fungal phytopathogens is a matter of immense concern. Control measures applied for eradication of fungal phytopathogens in maize are not up to the mark and more often involve harsh chemical(s)/pesticide(s) that cause deleterious effects both in humans and soil biota. Greener alternatives, such as the use of rhizosphere microbes in the form of bioinoculants, have proven to be very successful in terms of enhancing crop yield and suppressing fungal phytopathogens. In the present study, fluorescent pseudomonads were isolated from the maize rhizosphere and monitored for their plant growth-promoting (PGP) and biocontrol activities against Fusarium moniliforme. Based on various PGP traits and biocontrol potential, isolate JM-1 was found to be most effective and as per 16S rRNA gene sequencing analysis was identified as Pseudomonas fluorescens. Further experiments showed that the biocontrol potential of JM-1 against ear rot fungus involved the production of antifungal compound 2,4-diacetylphloroglucinol (DAPG). When examined for antagonistic interaction under scanning electron microscopy (SEM), structural abnormality, hyphal lysis, and deformity in fungal mycelium were observed. In the pot experiment, application of talc-based JM-1 containing bioformulation (in pot trials) showed significant enhancement in maize growth parameters (including the seed number and weight) in comparison to control even in presence of the phytopathogen. Ear fresh weight, dry weight, number of seeds per plant, and 100-grain weight were found to increase significantly by 34, 34, 52, and 18% respectively, in comparison to control. P. fluorescens JM-1 can therefore be used as a bioinoculant for ear rot disease control and sustainably enhancing maize yield. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-022-03201-7.
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Affiliation(s)
- Jitendra Mishra
- Department of Environmental Science, School of Earth and Environmental Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, UP 226025 India
| | - Isha Mishra
- Department of Environmental Science, School of Earth and Environmental Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, UP 226025 India
| | - Naveen Kumar Arora
- Department of Environmental Science, School of Earth and Environmental Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow, UP 226025 India
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Khan F, Tabassum N, Bamunuarachchi NI, Kim YM. Phloroglucinol and Its Derivatives: Antimicrobial Properties toward Microbial Pathogens. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:4817-4838. [PMID: 35418233 DOI: 10.1021/acs.jafc.2c00532] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Phloroglucinol (PG) is a natural product isolated from plants, algae, and microorganisms. Aside from that, the number of PG derivatives has expanded due to the discovery of their potential biological roles. Aside from its diverse biological activities, PG and its derivatives have been widely utilized to treat microbial infections caused by bacteria, fungus, and viruses. The rapid emergence of antimicrobial-resistant microbial infections necessitates the chemical synthesis of numerous PG derivatives in order to meet the growing demand for drugs. This review focuses on the use of PG and its derivatives to control microbial infection and the underlying mechanism of action. Furthermore, as future perspectives, some of the various alternative strategies, such as the use of PG and its derivatives in conjugation, nanoformulation, antibiotic combination, and encapsulation, have been thoroughly discussed. This review will enable the researcher to investigate the possible antibacterial properties of PG and its derivatives, either free or in the form of various formulations.
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Affiliation(s)
- Fazlurrahman Khan
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
| | - Nazia Tabassum
- Industry 4.0 Convergence Bionics Engineering, Pukyong National University, Busan 48513, Republic of Korea
| | | | - Young-Mog Kim
- Research Center for Marine Integrated Bionics Technology, Pukyong National University, Busan 48513, Republic of Korea
- Department of Food Science and Technology, Pukyong National University, Busan 48513, Republic of Korea
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Ullah A, Bano A. Modulation of Secondary Metabolites: A Halotolerance Strategy of Plant Growth Promoting Rhizobacteria Against Sodium Chloride Stress. Curr Microbiol 2021; 78:4050-4059. [PMID: 34609577 DOI: 10.1007/s00284-021-02647-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 08/30/2021] [Indexed: 10/20/2022]
Abstract
An experiment was conducted to evaluate the role of bacterial secondary metabolites against induced salt stress. Five bacterial strains were isolated from three different habitats: Khewra salt range, oily sludge field in Chakwal, and garden soil of Quaid-i-Azam University Islamabad, Pakistan. The 16S rRNA gene and BLAST analysis of bacterial strains showed 99% sequence similarity with Pseudomonas putida AMUPP-2 (KM435273), Lysinibacillus sphaericus OUG29GKBB (KM972671), Bacillus pumilus MB431 (KP723538) isolated from salt range, Pseudomonas fluorescens B8 (KF010368) from garden soil and Exiguobacterium aurantiacum SPD2 (KX121703) from oily sludge, respectively. Pseudomonas fluorescens produced 294.98 µg/g of proline in the M9 medium supplemented with 125 mM NaCl, but its growth rate was decreased from 1.81 to 0.37. The P. putida showed faster growth rate even than control at 125 mM NaCl. B. pumilus and L. sphaericus did not show any decline in growth rate up to 100 mM NaCl. The synthesis of new amino acids were recorded at 125 mM NaCl stress, e.g., Pro, Leu, Arg in P. fluorescens and L. sphaericus, Pro, Lys, Phe, Ala in P. putida, Lys, Ala in B. pumilus, Met, Val, and Ala in E. aurantiacum. Liquid chromatography-mass spectrometry analysis of ethyl acetate extract of P. putida and L. sphaericus demonstrated that NaCl (125mM) induced the production of 3-oxo-C12 homoserine lactone, oxosteroids, and steroid esters in addition to steroidal alkaloid lysophosphatidylcholines, antibiotics phenazine-1 carboxamide, 2,4-diacetyl phloroglucinol, carbazole, phosphatidylcholine, phosphatidyl ethanol amine, and salicylic acid as signaling compound. It was concluded that P. putida and L. sphaericus could be exploited for the production of secondary metabolites that have a wide range of implications in biotic and abiotic stresses and for the production of important pharmaceutical products.
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Affiliation(s)
- Asad Ullah
- The Peace Group of Schools and Colleges Charsadda, KPK, Charsadda, Pakistan
| | - Asghari Bano
- Department of Biosciences, University of Wah, Rawalpindi, Pakistan.
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