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Khalid H, Ahmad I, Sarfraz A, Iqbal A, Nishan U, Dib H, Ullah R, Sheheryar S, Shah M. Screening Asian Medicinal Plants for SARS-CoV-2 Inhibitors: A Computational Approach. Chem Biodivers 2024:e202402548. [PMID: 39670960 DOI: 10.1002/cbdv.202402548] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2024] [Revised: 12/11/2024] [Accepted: 12/13/2024] [Indexed: 12/14/2024]
Abstract
This work aimed to evaluate the antiviral potential of compounds from Asian medicinal plants against SARS-CoV-2's main protease and spike glycoprotein, identifying dual inhibitors from these plants that target both proteins through advanced virtual screening, molecular dynamics simulations, and pharmacophore analysis. An in-house library of 335 antiviral natural products was prepared from the selected medicinal plants. Following the virtual screening of this library against the main protease and spike glycoprotein, top compounds were subjected to downstream analysis for evaluating druggability potential and toxicity analysis. Molecular dynamic simulations were performed to confirm the stability of interactions between the ligands and target proteins. Our analysis demonstrated 67 compounds as dual inhibitors. The six top dual inhibitors, namely trans-delta-viniferin, trans-E-viniferin, 3,4-DHPEA-EDA, oleuropein aglycone, lactucopicrin, and 11β,13-dihydrolactucopicrin, exhibited superior docking scores and met drug-likeness criteria, including Lipinski's rule, bioavailability, and favorable ADME and toxicity profiles. Trans-delta-viniferin and trans-E-viniferin, featuring a stilbene scaffold, emerged as the most promising candidates due to their stable interactions, minimal fluctuations, and consistent hydrogen bonding across SARS-CoV-2's Mpro and S-protein in MD simulations, while 3,4-DHPEA-EDA displayed comparatively less stability. All compounds demonstrated key pharmacophoric features and lacked mutagenicity or PAINS alerts, although lactucopicrin and 11β,13-dihydrolactucopicrin showed risks for hepatotoxicity. Overall, the critical bonding and drug-like features, biological activity spectra, and favorable medicinal characteristics predict their biological behavior in laboratory testing. Although additional experimental validations are necessary, our findings indicate that the three lead compounds-namely, trans-delta-viniferin, trans-E-viniferin, and 3,4-DHPEA-EDA, isolated from traditional medicinal plants-are promising novel dual inhibitors of two critical SARS-CoV-2 proteins.
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Affiliation(s)
- Hira Khalid
- Department of Biochemistry, Bahauddin Zakariya University, Multan, 66000, Pakistan
| | - Iqra Ahmad
- Department of Biochemistry, Bahauddin Zakariya University, Multan, 66000, Pakistan
| | - Asifa Sarfraz
- Department of Biochemistry, Bahauddin Zakariya University, Multan, 66000, Pakistan
| | - Anwar Iqbal
- Department of Chemical Sciences, University of Lakki Marwat, Khyber Pakhtunkhwa, Pakistan
| | - Umar Nishan
- Hainan International Joint Research Center of Marine Advanced Photoelectric Functional Materials, College of Chemistry and Chemical Engineering, Hainan Normal University, Haikou, China
- Department of Chemistry, Kohat University of Science & Technology, Kohat, Pakistan
| | - Hanna Dib
- College of Engineering and Technology, American University of the Middle East, Kuwait
| | - Riaz Ullah
- Department of Pharmacognosy, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Sheheryar Sheheryar
- Department of Animal Science, Federal University of Ceara, Fortaleza, Brazil
| | - Mohibullah Shah
- Department of Biochemistry, Bahauddin Zakariya University, Multan, 66000, Pakistan
- Department of Animal Science, Federal University of Ceara, Fortaleza, Brazil
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Iskuzhina L, Batasheva S, Kryuchkova M, Rozhin A, Zolotykh M, Mingaleeva R, Akhatova F, Stavitskaya A, Cherednichenko K, Rozhina E. Advances in the Toxicity Assessment of Silver Nanoparticles Derived from a Sphagnum fallax Extract for Monolayers and Spheroids. Biomolecules 2024; 14:611. [PMID: 38927015 PMCID: PMC11202274 DOI: 10.3390/biom14060611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2024] [Revised: 04/26/2024] [Accepted: 05/05/2024] [Indexed: 06/28/2024] Open
Abstract
The production of nanomaterials through environmentally friendly methods is a top priority in the sustainable development of nanotechnology. This paper presents data on the synthesis of silver nanoparticles using an aqueous extract of Sphagnum fallax moss at room temperature. The morphology, stability, and size of the nanoparticles were analyzed using various techniques, including transmission electron microscopy, Doppler laser velocimetry, and UV-vis spectroscopy. In addition, Fourier transform infrared spectroscopy was used to analyze the presence of moss metabolites on the surface of nanomaterials. The effects of different concentrations of citrate-stabilized and moss extract-stabilized silver nanoparticles on cell viability, necrosis induction, and cell impedance were compared. The internalization of silver nanoparticles into both monolayers and three-dimensional cells spheroids was evaluated using dark-field microscopy and hyperspectral imaging. An eco-friendly method for the synthesis of silver nanoparticles at room temperature is proposed, which makes it possible to obtain spherical nanoparticles of 20-30 nm in size with high bioavailability and that have potential applications in various areas of human life.
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Affiliation(s)
- Liliya Iskuzhina
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Svetlana Batasheva
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
- Institute for Regenerative Medicine, Sechenov University, Trubetskaya Str. 8/2, 119992 Moscow, Russia
| | - Marina Kryuchkova
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Artem Rozhin
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Mariya Zolotykh
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Rimma Mingaleeva
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Farida Akhatova
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
| | - Anna Stavitskaya
- Department of Physical and Colloid Chemistry, Gubkin Russian State University of Oil and Gas, 119991 Moscow, Russia; (A.S.); (K.C.)
| | - Kirill Cherednichenko
- Department of Physical and Colloid Chemistry, Gubkin Russian State University of Oil and Gas, 119991 Moscow, Russia; (A.S.); (K.C.)
| | - Elvira Rozhina
- Institute of Fundamental Medicine and Biology, Kazan Federal University, Kreml uramı 18, 420008 Kazan, Republic of Tatarstan, Russia; (L.I.); (S.B.); (M.K.); (A.R.); (M.Z.); (R.M.); (F.A.)
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Hosseini A, Mobasheri L, Rakhshandeh H, Rahimi VB, Najafi Z, Askari VR. Edible Herbal Medicines as an Alternative to Common Medication for Sleep Disorders: A Review Article. Curr Neuropharmacol 2024; 22:1205-1232. [PMID: 37345244 PMCID: PMC10964091 DOI: 10.2174/1570159x21666230621143944] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Revised: 02/04/2023] [Accepted: 02/10/2023] [Indexed: 06/23/2023] Open
Abstract
Insomnia is repeated difficulty in falling asleep, maintaining sleep, or experiencing lowquality sleep, resulting in some form of daytime disturbance. Sleeping disorders cause daytime fatigue, mental confusion, and over-sensitivity due to insufficient recovery from a sound sleep. There are some drugs, such as benzodiazepines and anti-histaminic agents, which help to sleep induction and insomnia cure. However, the prolonged administration is unsuitable because of tolerance and dependence. Therefore, the researchers attempt to find new medicines with lesser adverse effects. Natural products have always been good sources for developing new therapeutics for managing diseases such as cancer, cardiovascular disease, diabetes, insomnia, and liver and renal problems. Ample research has justified the acceptable reason and relevance of the use of these herbs in the treatment of insomnia. It is worth noting that in this study, we looked into various Persian herbs in a clinical trial and in vivo to treat insomnia, such as Artemisia annua, Salvia reuterana, Viola tricolor, Passiflora incarnata, lettuce, and Capparis spinose. According to research, herb extracts and fractions, particularly n-butanol fractions with non-polar agents, impact the benzodiazepine receptors and have hypnotic properties. Also, alkaloids, glycosides, flavonoids, saponins, and tannins in practically every plant are mentioned making them the popular natural compounds to help with sleep disorders and promote calmness.
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Affiliation(s)
- Azar Hosseini
- Pharmacological Research Center of Medicinal Plants, Mashhad University of Medical Sciences, Mashhad Iran
| | - Leila Mobasheri
- Pharmacological Research Center of Medicinal Plants, Mashhad University of Medical Sciences, Mashhad Iran
| | - Hassan Rakhshandeh
- Pharmacological Research Center of Medicinal Plants, Mashhad University of Medical Sciences, Mashhad Iran
| | - Vafa Baradaran Rahimi
- Department of Cardiovascular Diseases, Faculty of Medicine, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Zohreh Najafi
- Division of Biotechnology, Faculty of Veterinary Medicine, Ferdowsi University of Mashhad, Mashhad, Iran
- International UNESCO Center for Health-Related Basic Sciences and Human Nutrition, Mashhad University of Medical Sciences, Mashhad, Iran
| | - Vahid Reza Askari
- International UNESCO Center for Health-Related Basic Sciences and Human Nutrition, Mashhad University of Medical Sciences, Mashhad, Iran
- Applied Biomedical Research Center, Mashhad University of Medical Sciences, Mashhad, Iran
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Shoaib A, Javed S, Wahab S, Azmi L, Tabish M, Sultan MH, Abdelsalam K, Alqahtani SS, Ahmad MF. Cellular, Molecular, Pharmacological, and Nano-Formulation Aspects of Thymoquinone-A Potent Natural Antiviral Agent. Molecules 2023; 28:5435. [PMID: 37513307 PMCID: PMC10383476 DOI: 10.3390/molecules28145435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2023] [Revised: 07/09/2023] [Accepted: 07/10/2023] [Indexed: 07/30/2023] Open
Abstract
The goal of an antiviral agent research is to find an antiviral drug that reduces viral growth without harming healthy cells. Transformations of the virus, new viral strain developments, the resistance of viral pathogens, and side effects are the current challenges in terms of discovering antiviral drugs. The time has come and it is now essential to discover a natural antiviral agent that has the potential to destroy viruses without causing resistance or other unintended side effects. The pharmacological potency of thymoquinone (TQ) against different communicable and non-communicable diseases has been proven by various studies, and TQ is considered to be a safe antiviral substitute. Adjunctive immunomodulatory effects in addition to the antiviral potency of TQ makes it a major compound against viral infection through modulating the production of nitric oxide and reactive oxygen species, decreasing the cytokine storm, and inhibiting endothelial dysfunction. Nevertheless, TQ's low oral bioavailability, short half-life, poor water solubility, and conventional formulation are barriers to achieving its optimal pharmacologic benefits. Nano-formulation proposes numerous ways to overcome these obstacles through a small particle size, a big surface area, and a variety of surface modifications. Nano-based pharmaceutical innovations to combat viral infections using TQ are a promising approach to treating surmounting viral infections.
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Affiliation(s)
- Ambreen Shoaib
- Department of Clinical Pharmacy, College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
- Pharmacy Practice Research Unit (PPRU), College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
| | - Shamama Javed
- Department of Pharmaceutics, College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
| | - Shadma Wahab
- Department of Pharmacognosy, College of Pharmacy, King Khalid University, Abha 62529, Saudi Arabia
| | - Lubna Azmi
- Department of Pharmaceutical Chemistry, Institute of Pharmaceutical Sciences, University of Lucknow, Lucknow 226007, India
| | - Mohammad Tabish
- Department of Pharmacology, College of Medicine, Shaqra University, Shaqra 11961, Saudi Arabia
| | - Muhammad H Sultan
- Department of Pharmaceutics, College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
| | - Karim Abdelsalam
- Department of Clinical Pharmacy, College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
- Pharmacy Practice Research Unit (PPRU), College of Pharmacy, Jazan University, Jazan 45142, Saudi Arabia
| | - Saad S Alqahtani
- Department of Clinical Pharmacy, College of Pharmacy, King Khalid University, Abha 62529, Saudi Arabia
| | - Md Faruque Ahmad
- Department of Clinical Nutrition, College of Applied Medical Sciences, Jazan University, Jazan 45142, Saudi Arabia
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