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Filbrun SL, Zhao F, Chen K, Huang TX, Yang M, Cheng X, Dong B, Fang N. Imaging Dynamic Processes in Multiple Dimensions and Length Scales. Annu Rev Phys Chem 2022; 73:377-402. [PMID: 35119943 DOI: 10.1146/annurev-physchem-090519-034100] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Optical microscopy has become an invaluable tool for investigating complex samples. Over the years, many advances to optical microscopes have been made that have allowed us to uncover new insights into the samples studied. Dynamic changes in biological and chemical systems are of utmost importance to study. To probe these samples, multidimensional approaches have been developed to acquire a fuller understanding of the system of interest. These dimensions include the spatial information, such as the three-dimensional coordinates and orientation of the optical probes, and additional chemical and physical properties through combining microscopy with various spectroscopic techniques. In this review, we survey the field of multidimensional microscopy and provide an outlook on the field and challenges that may arise. Expected final online publication date for the Annual Review of Physical Chemistry, Volume 73 is April 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
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Affiliation(s)
- Seth L Filbrun
- Department of Chemistry, Georgia State University, Atlanta, Georgia, USA
| | - Fei Zhao
- Department of Chemistry, Georgia State University, Atlanta, Georgia, USA
| | - Kuangcai Chen
- Department of Chemistry, Georgia State University, Atlanta, Georgia, USA.,Imaging Core Facility, Georgia State University, Atlanta, Georgia, USA
| | - Teng-Xiang Huang
- Department of Chemistry, Georgia State University, Atlanta, Georgia, USA
| | - Meek Yang
- Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, USA;
| | - Xiaodong Cheng
- The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen Key Laboratory of Analytical Molecular Nanotechnology, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, China; ,
| | - Bin Dong
- Department of Chemistry and Biochemistry, University of Arkansas, Fayetteville, Arkansas, USA;
| | - Ning Fang
- The MOE Key Laboratory of Spectrochemical Analysis and Instrumentation, State Key Laboratory of Physical Chemistry of Solid Surfaces, Innovation Laboratory for Sciences and Technologies of Energy Materials of Fujian Province (IKKEM), Xiamen Key Laboratory of Analytical Molecular Nanotechnology, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, Fujian, China; ,
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Tang L, Guo E, Zhang L, Wang Y, Gao S, Bao M, Han F, Yu W. The Function of CBM32 in Alginate Lyase VxAly7B on the Activity on Both Soluble Sodium Alginate and Alginate Gel. Front Microbiol 2022; 12:798819. [PMID: 35069502 PMCID: PMC8776709 DOI: 10.3389/fmicb.2021.798819] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Accepted: 12/15/2021] [Indexed: 11/29/2022] Open
Abstract
Carbohydrate-binding modules (CBMs), as an important auxiliary module, play a key role in degrading soluble alginate by alginate lyase, but the function on alginate gel has not been elucidated. Recently, we reported alginate lyase VxAly7B containing a CBM32 and a polysaccharide lyase family 7 (PL7). To investigate the specific function of CBM32, we characterized the full-length alginate lyase VxAly7B (VxAly7B-FL) and truncated mutants VxAly7B-CM (PL7) and VxAly7B-CBM (CBM32). Both VxAly7B-FL and native VxAly7B can spontaneously cleavage between CBM32 and PL7. The substrate-binding capacity and activity of VxAly7B-CM to soluble alginate were 0.86- and 1.97-fold those of VxAly7B-FL, respectively. Moreover, CBM32 could accelerate the expansion and cleavage of alginate gel beads, and the degradation rate of VxAly7B-FL to alginate gel beads was threefold that of VxAly7B-CM. Results showed that CBM32 is not conducive to the degradation of soluble alginate by VxAly7B but is helpful for binding and degradation of insoluble alginate gel. This study provides new insights into the function of CBM32 on alginate gel, which may inspire the application strategy of CBMs in insoluble substrates.
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Affiliation(s)
- Luyao Tang
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Enwen Guo
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Lan Zhang
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Ying Wang
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Shan Gao
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Mengmeng Bao
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Feng Han
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
| | - Wengong Yu
- School of Medicine and Pharmacy, Ocean University of China, Qingdao, China.,Key Laboratory of Marine Drugs, Ministry of Education, Qingdao, China.,Shandong Provincial Key Laboratory of Glycoscience and Glycoengineering, Qingdao, China.,Laboratory for Marine Drugs and Bioproducts of Qingdao National Laboratory for Marine Science and Technology, Qingdao, China
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Kim SE, Tieu MV, Hwang SY, Lee MH. Magnetic Particles: Their Applications from Sample Preparations to Biosensing Platforms. MICROMACHINES 2020; 11:mi11030302. [PMID: 32183074 PMCID: PMC7142445 DOI: 10.3390/mi11030302] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Revised: 02/28/2020] [Accepted: 03/10/2020] [Indexed: 02/07/2023]
Abstract
The growing interest in magnetic materials as a universal tool has been shown by an increasing number of scientific publications regarding magnetic materials and its various applications. Substantial progress has been recently made on the synthesis of magnetic iron oxide particles in terms of size, chemical composition, and surface chemistry. In addition, surface layers of polymers, silica, biomolecules, etc., on magnetic particles, can be modified to obtain affinity to target molecules. The developed magnetic iron oxide particles have been significantly utilized for diagnostic applications, such as sample preparations and biosensing platforms, leading to the selectivity and sensitivity against target molecules and the ease of use in the sensing systems. For the process of sample preparations, the magnetic particles do assist in target isolation from biological environments, having non-specific molecules and undesired molecules. Moreover, the magnetic particles can be easily applied for various methods of biosensing devices, such as optical, electrochemical, and magnetic phenomena-based methods, and also any methods combined with microfluidic systems. Here we review the utilization of magnetic materials in the isolation/preconcentration of various molecules and cells, and their use in various techniques for diagnostic biosensors that may greatly contribute to future innovation in point-of-care and high-throughput automation systems.
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Affiliation(s)
- Seong-Eun Kim
- Human IT Convergence Research Center, Korea Electronics Technology Institute, Gyeonggi-do 13509, Korea;
| | - My Van Tieu
- School of Integrative Engineering, Chung-Ang University, 84 Heukseok-ro, Seoul 06974, Korea; (M.V.T.); (S.Y.H.)
| | - Sei Young Hwang
- School of Integrative Engineering, Chung-Ang University, 84 Heukseok-ro, Seoul 06974, Korea; (M.V.T.); (S.Y.H.)
| | - Min-Ho Lee
- School of Integrative Engineering, Chung-Ang University, 84 Heukseok-ro, Seoul 06974, Korea; (M.V.T.); (S.Y.H.)
- Correspondence: ; Tel.: +82-2-820-5503; Fax: +82-2-814-2651
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Palkar V, Aprelev P, Salamatin A, Brasovs A, Kuksenok O, Kornev KG. Rotating magnetic nanorods detect minute fluctuations of magnetic field. Phys Rev E 2019; 100:051101. [PMID: 31869886 DOI: 10.1103/physreve.100.051101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Indexed: 11/07/2022]
Abstract
Magnetic nanorods rotating in a viscous liquid are very sensitive to any ambient magnetic field. We theoretically predicted and experimentally validated the conditions for two-dimensional synchronous and asynchronous rotation as well as three-dimensional precession and tumbling of nanorods in an ambient field superimposed on a planar rotating magnetic field. We discovered that any ambient field stabilizes the synchronous precession of the nanorod so that the nanorod precession can be completely controlled. This effect opens up different applications of magnetic nanorods as sensors of weak magnetic fields, for microrheology, and generally for magnetic levitation.
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Affiliation(s)
- Vaibhav Palkar
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
| | - Pavel Aprelev
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
| | - Arthur Salamatin
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
| | - Artis Brasovs
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
| | - Olga Kuksenok
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
| | - Konstantin G Kornev
- Department of Materials Science and Engineering, Clemson University, South Carolina 29634-0971, USA
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Ameer FS, Varahagiri S, Benza DW, Willett DR, Wen Y, Wang F, Chumanov G, Anker JN. Tuning Localized Surface Plasmon Resonance Wavelengths of Silver Nanoparticles by Mechanical Deformation. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2016; 120:20886-20895. [PMID: 28239431 PMCID: PMC5325716 DOI: 10.1021/acs.jpcc.6b02169] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
We describe a simple technique to alter the shape of silver nanoparticles (AgNPs) by rolling a glass tube over them to mechanically compress them. The resulting shape change in turn induces a red-shift in the localized surface plasmon resonance (LSPR) scattering spectrum and exposes new surface area. The flattened particles were characterized by optical and electron microscopy, single nanoparticle scattering spectroscopy, and surface enhanced Raman spectroscopy (SERS). AFM and SEM images show that the AgNPs deform into discs; increasing the applied load from 0 to 100 N increases the AgNP diameter and decreases the height. This deformation caused a dramatic red shift in the nanoparticle scattering spectrum and also generated new surface area to which thiolated molecules could attach as evident from SERS measurements. The simple technique employed here requires no lithographic templates and has potential for rapid, reproducible, inexpensive and scalable tuning of nanoparticle shape, surface area, and resonance while preserving particle volume.
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Affiliation(s)
- Fathima S Ameer
- Department of Chemistry, Clemson University, Clemson SC 29634
| | - Shilpa Varahagiri
- Department of Chemistry, Clemson University, Clemson SC 29634; Department of Mechanical Engineering, Clemson University, Clemson SC 29634
| | - Donald W Benza
- Department of Chemistry, Clemson University, Clemson SC 29634; Department of Electrical and Computer Engineering, Clemson University, Clemson SC 29634
| | | | - Yimei Wen
- Department of Chemistry, Clemson University, Clemson SC 29634
| | - Fenglin Wang
- Department of Chemistry, Clemson University, Clemson SC 29634
| | - George Chumanov
- Department of Chemistry, Clemson University, Clemson SC 29634
| | - Jeffrey N Anker
- Department of Chemistry, Clemson University, Clemson SC 29634; Center for Optical Materials Science and Engineering Technologies (COMSET), Clemson University, Clemson SC 29634
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