Structure-based discovery of pyrazole-benzothiadiazole hybrid as human HPPD inhibitors

β-Triketones from Leptospermum scoparium (mānuka) oil show potential as scabicides

BACKGROUND

Scabies is a debilitating and neglected infectious disease with limited effective treatment options and affecting millions of people worldwide, mainly in poor and overcrowded settings. Essential oils from Australasian Myrtaceae are known to have parasiticidal properties, often attributed to the presence of β-triketones, which are known inhibitors of the tyrosine catabolism pathway through inhibition of hydroxyphenylpyruvate dioxygenase (HPPD).

PURPOSE

In this study, essential oils from mānuka (Leptospermum scoparium) were evaluated in vitro for miticidal and ovicidal activities and their active β-triketone constituents (flavesone, leptospermone, and isoleptospermone) were identified.

METHODS

Mite survival and egg hatching bioassays were performed to assess the scabicidal (miticidal and ovicidal) properties of Australasian Myrtaceae essential oils (mānuka, tea tree, and kunzea), mānuka oil fractions and three β-triketones (leptospermone, isoleptospermone, flavesone). Scabicidal constituents of mānuka oil were determined and quantified by 1H NMR spectroscopy and gas chromatography. To investigate HPPD as a potential target of β-triketones in scabies, tyrosine and fumarate levels were measured in mites following exposure to flavesone, and in silico docking of β-triketones in homology models of scabies HPPD structures was performed.

RESULTS

Mānuka oil had superior scabicidal activity compared to conventional treatments, ivermectin and permethrin, as well as kunzea and tea tree oils. The analysis of the chemical composition of mānuka oil revealed a high abundance of sesquiterpenes (42 %), and three β-triketones, flavesone (4.7 %), leptospermone (17.2 %), and isoleptospermone (5.1 %). Miticidal and ovicidal activity was strongly correlated with the presence of these β-triketones, but not the sesquiterpenes. The β-triketones had similar miticidal activity (LC50 58.6-61.7 mM at 4 h; LT50 1.3-1.4 h at 150 mM) to each other and to mānuka oil, and showed high ovicidal activity in young and mature eggs, with leptospermone being the most potent (LC50 33.6-75.9 mM). Significantly altered tyrosine and fumarate levels in mites after exposure to flavesone compared to untreated mites indicate a possible interference of flavesone with the tyrosine catabolism pathway. Molecular docking experiments indicate that this activity is likely underpinned by their inhibition of the Sarcoptes scabiei hydroxyphenylpyruvate dioxygenase (SsHPPD).

CONCLUSIONS

Our results demonstrated that mānuka oil and the β-triketones flavesone, leptospermone, and isoleptospermone can effectively kill scabies mites and eggs at early and late developmental stages, likely through their inhibition of tyrosine catabolism. This work has revealed SsHPPD as a potential new target for the development of novel topical scabies drugs that target all life-stages of the parasite.

An artificially evolved gene for herbicide-resistant rice breeding

Discovering and engineering herbicide-resistant genes is a crucial challenge in crop breeding. This study focuses on the 4-hydroxyphenylpyruvate dioxygenase Inhibitor Sensitive 1-Like (HSL) protein, prevalent in higher plants and exhibiting weak catalytic activity against many β-triketone herbicides (β-THs). The crystal structures of maize HSL1A complexed with β-THs were elucidated, identifying four essential herbicide-binding residues and explaining the weak activity of HSL1A against the herbicides. Utilizing an artificial evolution approach, we developed a series of rice HSL1 mutants targeting the four residues. Then, these mutants were systematically evaluated, identifying the M10 variant as the most effective in modifying β-THs. The initial active conformation of substrate binding in HSL1 was also revealed from these mutants. Furthermore, overexpression of M10 in rice significantly enhanced resistance to β-THs, resulting in a notable 32-fold increase in resistance to methyl-benquitrione. In conclusion, the artificially evolved M10 gene shows great potential for the development of herbicide-resistant crops.

Design, Synthesis, and Biological Evaluation of Pyridazinone-Containing Derivatives As Novel Protoporphyrinogen IX Oxidase Inhibitor

Protoporphyrinogen IX oxidase (PPO, E.C. 1.3.3.4) plays a pivotal role in chlorophyll biosynthesis in plants, making it a prime target for herbicide development. In this study, we conducted an investigation aimed at discovering PPO-inhibiting herbicides. Through this endeavor, we successfully identified a series of novel compounds based on the pyridazinone scaffold. Following structural optimization and biological assessment, compound 10ae, known as ethyl 3-((6-fluoro-5-(6-oxo-4-(trifluoromethyl)pyridazin-1(6H)-yl)benzo[d]thiazol-2-yl)thio)propanoate, emerged as a standout performer. It exhibited robust activity against Nicotiana tabacum PPO (NtPPO) with an inhibition constant (Ki) value of 0.0338 μM. Concurrently, we employed molecular simulations to obtain further insight into the binding mechanism with NtPPO. Additionally, another compound, namely, ethyl 2-((6-fluoro-5-(5-methyl-6-oxo-4-(trifluoromethyl)pyridazin-1(6H)-yl)benzo[d]thiazol-2-yl)thio)propanoate (10bh), demonstrated broad-spectrum and highly effective herbicidal properties against all six tested weeds (Leaf mustard, Chickweed, Chenopodium serotinum, Alopecurus aequalis, Poa annua, and Polypogon fugax) at the dosage of 150 g a.i./ha through postemergence application in a greenhouse. This work identified a novel lead compound (10bh) that showed good activity in vitro and excellent herbicidal activity in vivo and had promising prospects as a new PPO-inhibiting herbicide lead.

Integrated Virtual Screening and Validation toward Potential HPPD Inhibition Herbicide

4-Hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27, HPPD) is one of the most widely studied herbicide targets and has gained significant attention. To identify potential effective HPPD inhibitors, a rational multistep virtual screening workflow was built, which included CBP models (based on the receptor-ligand interactions in the crystal complex), Hypogen models with activity prediction ability (according to the derivation of structure-activity relationships from a set of molecules with reported activity values), and a consensus docking procedure (consisting of LibDock, Glide, and CDOCKER). About 1 million molecules containing diketone or β-keto-enol substructures were filtered by Lipinski's rules, CBP model, and Hypogen model. A total of 12 compounds with similar docking postures were generated by consensus docking. Eventually, four molecules were screened based on the specific binding pattern and affinity of the HPPD inhibitor. The biological evaluation in vivo displayed that compounds III-1 and III-2 exhibited comparable herbicidal activity to isoxaflutole and possessed superior safety on various crops (wheat, rice, sorghum, and maize). The ADMET prediction (absorption, distribution, metabolism, excretion, and toxicity) showed that compound III possessed relatively good toxicological results. This work provides a theoretical basis and valuable reference for the virtual screening and molecular design of novel HPPD inhibition herbicides.