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Basbuga S, Basbuga S, Can C, Yayla F. Phenotypic and genotypic diversity of root nodule bacteria from wild Lathyrus and Vicia species in Gaziantep, Turkey. Folia Microbiol (Praha) 2024:10.1007/s12223-024-01156-1. [PMID: 38526677 DOI: 10.1007/s12223-024-01156-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Accepted: 03/08/2024] [Indexed: 03/27/2024]
Abstract
This study identified the phenotypic and genotypic characteristics of the bacteria that nodulate wild Lathyrus and Vicia species natural distribution in the Gaziantep province of Turkey. Principle component analysis of phenotypic features revealed that rhizobial isolates were highly resistant to stress factors such as high salt, pH and temperature. They were found to be highly sensitive to the concentrations (mg/mL) of the antibiotics neomycin 10, kanamycin, and tetracycline 5, as well as the heavy metals Ni 10, and Cu 10, and 5. As a result of REP-PCR analysis, it was determined that the rhizobial isolates were quite diverse, and 5 main groups and many subgroups being found. All of the isolates nodulating wild Vicia species were found to be related to Rhizobium sp., and these isolates were found to be in Clades II, III, IV, and V of the phylogenetic tree based on 16S rRNA. The isolates that nodulated wild Lathyrus species were in Clades I, II, IV, V, VI, VII, and VIII, and they were closely related to Rhizobium leguminasorum, Rhizobium sp., Phyllobacterium sp., Serratia sp., and Pseudomonas sp. According to the genetic analyses, the isolates could not be classified at the species level, the similarity ratio was low, they formed a distinct group that was supported by strong bootstrap values in the phylogenetic tree, and the differences discovered in the network analysis revealed the diversity among the isolates and gave important findings that these isolates may be new species.
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Affiliation(s)
- Sevil Basbuga
- Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey.
| | - Selcuk Basbuga
- Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
| | - Canan Can
- Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
| | - Fatih Yayla
- Biology Department, Science and Letter Faculty, Gaziantep University, Gaziantep, Turkey
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Ilahi H, Zampieri E, Sbrana C, Brescia F, Giovannini L, Mahmoudi R, Gohari G, El Idrissi MM, Alfeddy MN, Schillaci M, Ouahmane L, Calvo A, Sillo F, Fotopoulos V, Balestrini R, Mnasri B. Impact of two Erwinia sp. on the response of diverse Pisum sativum genotypes under salt stress. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2024; 30:249-267. [PMID: 38623163 PMCID: PMC11016052 DOI: 10.1007/s12298-024-01419-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Revised: 02/16/2024] [Accepted: 02/20/2024] [Indexed: 04/17/2024]
Abstract
Currently, salinization is impacting more than 50% of arable land, posing a significant challenge to agriculture globally. Salt causes osmotic and ionic stress, determining cell dehydration, ion homeostasis, and metabolic process alteration, thus negatively influencing plant development. A promising sustainable approach to improve plant tolerance to salinity is the use of plant growth-promoting bacteria (PGPB). This work aimed to characterize two bacterial strains, that have been isolated from pea root nodules, initially called PG1 and PG2, and assess their impact on growth, physiological, biochemical, and molecular parameters in three pea genotypes (Merveille de Kelvedon, Lincoln, Meraviglia d'Italia) under salinity. Bacterial strains were molecularly identified, and characterized by in vitro assays to evaluate the plant growth promoting abilities. Both strains were identified as Erwinia sp., demonstrating in vitro biosynthesis of IAA, ACC deaminase activity, as well as the capacity to grow in presence of NaCl and PEG. Considering the inoculation of plants, pea biometric parameters were unaffected by the presence of the bacteria, independently by the considered genotype. Conversely, the three pea genotypes differed in the regulation of antioxidant genes coding for catalase (PsCAT) and superoxide dismutase (PsSOD). The highest proline levels (212.88 μmol g-1) were detected in salt-stressed Lincoln plants inoculated with PG1, along with the up-regulation of PsSOD and PsCAT. Conversely, PG2 inoculation resulted in the lowest proline levels that were observed in Lincoln and Meraviglia d'Italia (35.39 and 23.67 μmol g-1, respectively). Overall, this study highlights the potential of these two strains as beneficial plant growth-promoting bacteria in saline environments, showing that their inoculation modulates responses in pea plants, affecting antioxidant gene expression and proline accumulation. Supplementary Information The online version contains supplementary material available at 10.1007/s12298-024-01419-8.
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Affiliation(s)
- Houda Ilahi
- Faculty of Sciences of Tunis, University Tunis El Manar, 2092 Tunis, Tunisia
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901, 2050 Hammam-Lif, Tunisia
| | - Elisa Zampieri
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Cristiana Sbrana
- Institute of Agricultural Biology and Biotechnology (IBBA), National Research Council of Italy, Via Moruzzi 1, 56124 Pisa, Italy
| | - Francesca Brescia
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Luca Giovannini
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Roghayyeh Mahmoudi
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, 3036 Limassol, Cyprus
| | - Gholamreza Gohari
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, 3036 Limassol, Cyprus
| | - Mustapha Missbah El Idrissi
- Faculty of Sciences, Centre de Biotechnologies Végétale et Microbienne, Biodiversité et Environnement, Mohammed V University in Rabat, Rabat, Morocco
| | - Mohamed Najib Alfeddy
- Phytobacteriology Laboratory Plant Protection Research, Unit CRRA Marrakesh National Institute for Agronomical Research Marrakesh, 40000 Marrakesh, Morocco
| | - Martino Schillaci
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Lahcen Ouahmane
- Laboratory of Microbial Biotechnologies Agrosciences and Environment, Cadi Ayyad University, 40000 Marrakesh, Morocco
| | - Alice Calvo
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Fabiano Sillo
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, 3036 Limassol, Cyprus
| | - Raffaella Balestrini
- Institute for Sustainable Plant Protection (IPSP), National Research Council of Italy, Strada Delle Cacce 73, 10135 Turin, Italy
| | - Bacem Mnasri
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901, 2050 Hammam-Lif, Tunisia
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Genetic diversity of rhizobia isolated from nodules of Trigonella foenum-graecum L. (fenugreek) cultivated in Northwestern Morocco. Arch Microbiol 2022; 204:574. [PMID: 36006460 DOI: 10.1007/s00203-022-03189-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 08/02/2022] [Accepted: 08/12/2022] [Indexed: 11/02/2022]
Abstract
The present work aimed to characterize rhizobia nodulating Trigonella foenum-graecum L. (fenugreek) cultivated in six different geographical locations in Northwestern Morocco. Forty-seven rhizobial isolates from nodules of Trigonella foenum-graecum were grouped into thirteen clusters using the Rep-PCR technique. The phylogenetic analysis based on 16S rRNA gene sequences of 13 groups showed that all representative strains were closely related to members of the genus Ensifer (syn. Sinorhizobium) of the Alphaproteobacteria. All the representative strains shared 100% similarity with Ensifer medicae WSM419T. NodC and nifH gene analysis revealed a close phylogenetic relationship of the representative strains with those of the strains belonging to the symbiovar meliloti. Furthermore, nodulation ability of our rhizobial strains was efficient in their host plant (Trigonella foenum-graecum L.).
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Hsouna J, Gritli T, Ilahi H, Ellouze W, Mansouri M, Chihaoui SA, Bouhnik O, Missbah El Idrissi M, Abdelmoumen H, Wipf D, Courty PE, Bekki A, Tambong JT, Mnasri B. Genotypic and symbiotic diversity studies of rhizobia nodulating Acacia saligna in Tunisia reveal two novel symbiovars within the Rhizobium leguminosarum complex and Bradyrhizobium. Syst Appl Microbiol 2022; 45:126343. [PMID: 35759954 DOI: 10.1016/j.syapm.2022.126343] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 05/08/2022] [Accepted: 06/12/2022] [Indexed: 11/15/2022]
Abstract
Acacia saligna is an invasive alien species that has the ability to establish symbiotic relationships with rhizobia. In the present study, genotypic and symbiotic diversity of native rhizobia associated with A. saligna in Tunisia were studied. A total of 100 bacterial strains were selected and three different ribotypes were identified based on rrs PCR-RFLP analysis. Sequence analyses of rrs and four housekeeping genes (recA, atpD, gyrB and glnII) assigned 30 isolates to four putative new lineages and a single strain to Sinorhizobium meliloti. Thirteen slow-growing isolates representing the most dominant IGS (intergenic spacer) profile clustered distinctly from known rhizobia species within Bradyrhizobium with the closest related species being Bradyrhizobium shewense and Bradyrhizobium niftali, which had 95.17% and 95.1% sequence identity, respectively. Two slow-growing isolates, 1AS28L and 5AS6L, had B. frederekii as their closest species with a sequence identity of 95.2%, an indication that these strains could constitute a new lineage. Strains 1AS14I, 1AS12I and 6AS6 clustered distinctly from known rhizobia species but within the Rhizobium leguminosarum complex (Rlc) with the most closely related species being Rhizobium indicum with 96.3% sequence identity. Similarly, the remaining 11 strains showed 96.9 % and 97.2% similarity values with R. changzhiense and R. indicum, respectively. Based on nodC and nodA phylogenies and cross inoculation tests, these 14 strains of Rlc species clearly diverged from strains of Sinorhizobium and Rlc symbiovars, and formed a new symbiovar for which the name sv. "salignae" is proposed. Bacterial strains isolated in this study that were taxonomically assigned to Bradyrhizobium harbored different symbiotic genes and the data suggested a new symbiovar, for which sv. "cyanophyllae" is proposed. Isolates formed effective nodules on A. saligna.
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Affiliation(s)
- Jihed Hsouna
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia
| | - Takwa Gritli
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia
| | - Houda Ilahi
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia
| | - Walid Ellouze
- Agriculture and Agri-Food Canada, 4902 Victoria Avenue North, Vineland Station, Ontario L0R 2E0, Canada.
| | - Maroua Mansouri
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia
| | - Saif-Allah Chihaoui
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia
| | - Omar Bouhnik
- Faculty of Sciences, Centre de Biotechnologies Végétale et Microbienne, Biodiversité et Environnement, Mohammed V University, Rabat, Morocco
| | - Mustapha Missbah El Idrissi
- Faculty of Sciences, Centre de Biotechnologies Végétale et Microbienne, Biodiversité et Environnement, Mohammed V University, Rabat, Morocco
| | - Hanaa Abdelmoumen
- Faculty of Sciences, Centre de Biotechnologies Végétale et Microbienne, Biodiversité et Environnement, Mohammed V University, Rabat, Morocco
| | - Daniel Wipf
- Agroécologie, Institut Agro Dijon, CNRS, Univ. Bourgogne, INRAE, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
| | - Pierre Emmanuel Courty
- Agroécologie, Institut Agro Dijon, CNRS, Univ. Bourgogne, INRAE, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
| | - Abdelkader Bekki
- Laboratory of Rhizobia Biotechnology and Plant Breeding, University Oran1, Es Senia 31000, Algeria
| | - James T Tambong
- Agriculture and Agri-Food Canada, 960 Carling Avenue, Ottawa, Ontario K1A 0C6, Canada
| | - Bacem Mnasri
- Laboratory of Legumes and Sustainable Agroecosystems, Centre of Biotechnology of Borj-Cédria, BP 901 Hammam-lif 2050, Tunisia.
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Gritli T, Boubakri H, Essahibi A, Hsouna J, Ilahi H, Didier R, Mnasri B. Salt stress mitigation in Lathyrus cicera by combining different microbial inocula. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2022; 28:1191-1206. [PMID: 35910445 PMCID: PMC9334493 DOI: 10.1007/s12298-022-01205-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 06/27/2022] [Accepted: 06/27/2022] [Indexed: 05/03/2023]
Abstract
UNLABELLED Arid and semi-arid areas are considered vulnerable to various environmental constraints which are further fortified by climate change. Salinity is one of the most serious abiotic factors affecting crop yield and soil fertility. Till now, no information is available on the effect of salinity on development and symbiotic nitrogen (N2) fixation in the legume species Lathyrus cicera. Here, we evaluated the effect of different microbial inocula including nitrogen-fixing Rhizobium laguerreae, arbuscular mycorrhizal fungus (AMF) Rhizophagus irregularis, a complex mixed inoculum of AMF isolated from rhizospheric soil in "Al Aitha", and various plant growth-promoting bacteria (PGPB) including Bacillus subtilus, Bacillus simplex and Bacillus megaterium combined with Rhizobium, the AMF consortium, or R. irregularis on alleviating salt stress in this legume. A pot trial was conducted to evaluate the ability of different microbial inocula to mitigate adverse effects of salinity on L. cicera plants. The results showed that salinity (100 mM NaCl) significantly reduced L. cicera plant growth. However, inoculation with different inocula enhanced plant growth and markedly promoted various biochemical traits. Moreover, the combined use of PGPB and AMF was found to be the most effective treatment in mitigating deleterious effects of salinity stress on L. cicera. In addition, this co-inoculation upregulated the expression of two marker genes (LcHKT1 and LcNHX7) related to salinity tolerance. Our findings suggest that the AMF/PGPB formulation has a great potential to be used as a biofertilizer to improve L. cicera plant growth and productivity under saline conditions. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s12298-022-01205-4.
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Affiliation(s)
- Takwa Gritli
- Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cedria, BP 901, 2050 Hammam-Lif, Tunisia
| | - Hatem Boubakri
- Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cedria, BP 901, 2050 Hammam-Lif, Tunisia
| | | | - Jihed Hsouna
- Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cedria, BP 901, 2050 Hammam-Lif, Tunisia
| | - Houda Ilahi
- Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cedria, BP 901, 2050 Hammam-Lif, Tunisia
| | - Reinhardt Didier
- Department of Biology, Rte. Albert-Gockel 3, CH- 1700 Fribourg, Switzerland
| | - Bacem Mnasri
- Laboratory of Legumes and Sustainable Agrosystems, Centre of Biotechnology of Borj-Cedria, BP 901, 2050 Hammam-Lif, Tunisia
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