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Tang H, Chen X, Chen M, Li X, Jiang J, Tuo L, Li F. Phycicoccus sonneraticus sp. nov., a Novel Endophytic Actinobacterium Isolated from the Bark of Sonneratia apetala. Curr Microbiol 2023; 80:393. [PMID: 37897506 DOI: 10.1007/s00284-023-03511-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 10/03/2023] [Indexed: 10/30/2023]
Abstract
A novel endophytic actinobacterial strain, designated MQZ13P-5T, was isolated from a piece of bark of Sonneratia apetala, collected from Guangxi Zhuang Autonomous Region, China. This strain was Gram-stain positive, aerobic, non-spore-forming, non-motile and rod-shaped. Comparative 16S rRNA gene sequence analysis showed that strain MQZ13P-5T was related to the genus Phycicoccus with exhibiting the highest similarity (98.0%) to Phycicoccus endophyticus IP6SC6T. The phylogenetic trees based on 16S rRNA gene sequences and core genes indicated that strain MQZ13P-5T belonged to the genus Phycicoccus and could not be assigned to any described species. The average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values between strain MQZ13P-5T and type strains of Phycicoccus species were less than 84% and 27%, respectively, below the thresholds for species delineation. This strain showed chemotaxonomic and phenotypic properties consistent with its classification in the genus Phycicoccus. Based on the taxonomic data, strain MQZ13P-5T should represent a novel species of the genus Phycicoccus, for which the name Phycicoccus sonneraticus sp. nov. is proposed, with the type strain MQZ13P-5T (= CGMCC 1.18744T = JCM 34337T).
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Affiliation(s)
- Huiling Tang
- Department of Scientific Research Office, Jiangsu Food & Pharmaceutical Science College, Huai'an, 223003, China
| | - Xiaohui Chen
- School of Basic Medical Sciences, Zunyi Medical University, Zunyi, 563006, China
| | - Mingsheng Chen
- School of Basic Medical Sciences, Zunyi Medical University, Zunyi, 563006, China
| | - Xiaohong Li
- School of Basic Medical Sciences, Zunyi Medical University, Zunyi, 563006, China
| | - Jianjing Jiang
- School of Basic Medical Sciences, Zunyi Medical University, Zunyi, 563006, China
| | - Li Tuo
- School of Basic Medical Sciences, Zunyi Medical University, Zunyi, 563006, China.
| | - Feina Li
- Laboratory of Respiratory Diseases, Beijing Key Laboratory of Pediatric Respiratory Infection Diseases, Beijing Children's Hospital, Key Laboratory of Major Diseases in Children, Ministry of Education, National Clinical Research Center for Respiratory Diseases, Beijing Pediatric Research Institute, Capital Medical University, National Center for Children's Health, Beijing, 100045, China.
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Li FN, Zheng ZQ, Chen MS, Chen XH, Tuo L. Ancylobacter mangrovi sp. nov., a novel endophytic bacterium isolated form mangrove plant☆. Syst Appl Microbiol 2023; 46:126419. [PMID: 37030242 DOI: 10.1016/j.syapm.2023.126419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 03/27/2023] [Accepted: 03/31/2023] [Indexed: 04/03/2023]
Abstract
Two novel strains GSK1Z-4-2T and MQZ15Z-1 were isolated from branches of mangrove plants collected from Guangxi Zhuang Autonomous Region, China. Both strains were Gram-negative, aerobic, non-flagellated and non-spore-forming bacteria. The comparison of 16S rRNA gene sequences initially indicated that the two strains were assigned to the genus Ancylobacter with sharing the highest similarity to Ancylobacter pratisalsi DSM 102029T (97.3%). The 16S rRNA gene sequence similarity, average nucleotide identity (ANI) and in silico DNA-DNA hybridization (isDDH) values between strains GSK1Z-4-2T and MQZ15Z-1 were 99.9%, 97.4% and 77.4%, respectively, which revealed that the two strains belonged to the same species. Phylogenetic analyses based on 16S rRNA gene sequences and the core proteome showed that the two strains formed a well-supported cluster with A. pratisalsi DSM 102029T. Moreover, the ANI and isDDH values between strain GSK1Z-4-2T and A. pratisalsi DSM 102029T were 83.0% and 25.8%, respectively, demonstrating that strain GSK1Z-4-2T was a previously undescribed species. Meanwhile, strains GSK1Z-4-2T and MQZ15Z-1 exhibited most of chemotaxonomic and phenotypic features consistent with the description of the genus Ancylobacter. Based on the polyphasic data, strains GSK1Z-4-2T and MQZ15Z-1 should represent a novel species of the genus Ancylobacter, for which the name Ancylobacter mangrovi sp. nov. is proposed. The type strain is GSK1Z-4-2T (=MCCC 1K07181T = JCM 34924T).
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Affiliation(s)
- Fei-Na Li
- Laboratory of Respiratory Diseases, Beijing Key Laboratory of Pediatric Respiratory Infection Diseases, Beijing Pediatric Research Institute, Beijing Children's Hospital, Capital Medical University, Key Laboratory of Major Diseases in Children, Ministry of Education, National Clinical Research Center for Respiratory Diseases, National Center for Children's Health, Beijing 100045, PR China
| | - Zhou-Qing Zheng
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Ming-Sheng Chen
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Xiao-Hui Chen
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China
| | - Li Tuo
- Life Sciences Institute, Zunyi Medical University, Zunyi 563006, PR China.
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Oren A, Göker M. Validation List no. 209. Valid publication of new names and new combinations effectively published outside the IJSEM. Int J Syst Evol Microbiol 2023; 73. [PMID: 36724088 DOI: 10.1099/ijsem.0.005709] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Aharon Oren
- The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel
| | - Markus Göker
- Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany
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Liu J, Song M, Wei X, Zhang H, Bai Z, Zhuang X. Responses of Phyllosphere Microbiome to Ozone Stress: Abundance, Community Compositions and Functions. Microorganisms 2022; 10:microorganisms10040680. [PMID: 35456732 PMCID: PMC9024792 DOI: 10.3390/microorganisms10040680] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Revised: 03/16/2022] [Accepted: 03/21/2022] [Indexed: 02/06/2023] Open
Abstract
Ozone is a typical hazardous pollutant in Earth’s lower atmosphere, but the phyllosphere and its microbiome are promising for air pollution remediation. Despite research to explore the efficiency and mechanism of ozone phylloremediation, the response and role of the phyllosphere microbiome remains untouched. In this study, we exposed Euonymus japonicus to different ozone levels and revealed microbial successions and roles of the phyllosphere microbiome during the exposure. The low-level exposure (156 ± 20 ppb) induced limited response compared to other environmental factors. Fungi failed to sustain the community richness and diversity, despite the stable ITS concentration, while bacteria witnessed an abundance loss. We subsequently elevated the exposure level to 5000~10,000 ppb, which considerably deteriorated the bacterial and fungal diversity. Our results identified extremely tolerant species, including bacterial genera (Curtobacterium, Marmoricola, and Microbacterium) and fungal genera (Cladosporium and Alternaria). Compositional differences suggested that most core fungal taxa were related to plant diseases and biocontrol, and ozone exposure might intensify such antagonism, thus possibly influencing plant health and ozone remediation. This assumption was further evidenced in the functional predictions via a pathogen predominance. This study shed light on microbial responses to ozone exposure in the phyllosphere and enlightened the augmentation of ozone phylloremediation through the microbial role.
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Affiliation(s)
- Jiayu Liu
- Beijing Key Laboratory of Water Resources and Environment Engineering, School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, China; (J.L.); (H.Z.)
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (M.S.); (X.W.)
| | - Manjiao Song
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (M.S.); (X.W.)
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xinyuan Wei
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (M.S.); (X.W.)
| | - Huanzhen Zhang
- Beijing Key Laboratory of Water Resources and Environment Engineering, School of Water Resources and Environment, China University of Geosciences (Beijing), Beijing 100083, China; (J.L.); (H.Z.)
| | - Zhihui Bai
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (M.S.); (X.W.)
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China
- Xiongan Institute of Innovation, Xiongan New Area 071000, China
- Correspondence: (Z.B.); (X.Z.); Tel.: +86-10-6284-9156 (Z.B.); +86-10-6284-9193 (X.Z.)
| | - Xuliang Zhuang
- Key Laboratory of Environmental Biotechnology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China; (M.S.); (X.W.)
- Sino-Danish College, University of Chinese Academy of Sciences, Beijing 100049, China
- Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- Correspondence: (Z.B.); (X.Z.); Tel.: +86-10-6284-9156 (Z.B.); +86-10-6284-9193 (X.Z.)
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