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Siniakova TS, Raikov AV, Kudryasheva NS. Water-Soluble Polymer Polyethylene Glycol: Effect on the Bioluminescent Reaction of the Marine Coelenterate Obelia and Coelenteramide-Containing Fluorescent Protein. Int J Mol Sci 2023; 24:ijms24076345. [PMID: 37047313 PMCID: PMC10094403 DOI: 10.3390/ijms24076345] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 03/21/2023] [Accepted: 03/23/2023] [Indexed: 03/30/2023] Open
Abstract
The current paper considers the effects of a water-soluble polymer (polyethylene glycol (PEG)) on the bioluminescent reaction of the photoprotein obelin from the marine coelenterate Obelia longissima and the product of this bioluminescent reaction: a coelenteramide-containing fluorescent protein (CCFP). We varied PEG concentrations (0–1.44 mg/mL) and molecular weights (1000, 8000, and 35,000 a.u.). The presence of PEG significantly increased the bioluminescent intensity of obelin but decreased the photoluminescence intensity of CCFP; the effects did not depend on the PEG concentration or the molecular weight. The photoluminescence spectra of CCFP did not change, while the bioluminescence spectra changed in the course of the bioluminescent reaction. The changes can be explained by different rigidity of the media in the polymer solutions affecting the stability of the photoprotein complex and the efficiency of the proton transfer in the bioluminescent reaction. The results predict and explain the change in the luminescence intensity and color of the marine coelenterates in the presence of water-soluble polymers. The CCFP appeared to be a proper tool for the toxicity monitoring of water-soluble polymers (e.g., PEGs).
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Affiliation(s)
| | - Alexander V. Raikov
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia
| | - Nadezhda S. Kudryasheva
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia
- Institute of Biophysics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia
- Correspondence: n ; Tel.: +7-391-249-42-42
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Polyakova GG, Senashova VA, Podolyak NM, Kolovskaya AV, Kudryasheva NS. Assessment of air toxicity in the megalopolis of Krasnoyarsk using long-term monitoring of suburban pine forests. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT 2022. [PMID: 36039800 DOI: 10.1002/ieam.4675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Revised: 08/08/2022] [Accepted: 08/12/2022] [Indexed: 06/15/2023]
Abstract
The present study develops the application of suburban forests as bioindicators, with the industrial metropolis of Krasnoyarsk (Central Siberia, Russia) taken as an example. Huge forests, such as those found in large Siberian territories, are climate-forming for the entire planet. Hence, their conservation is essential at both the local and global scales. During the period 2002-2021, the vigor state of two pine forests was evaluated using several inventory and morphological parameters: needle damage, deterioration in tree condition, increased entropy, and tree mortality. Additionally, an original bioindication parameter was applied: episodic increase in the size of needles was analyzed. We hypothesized that this increase in needle size was related to the activation of tree protection at the initial stage of tree damage; the mechanism assumes a redirection of sugar transport into the crown to aid tree regeneration. All parameters were measured annually on six permanent sample plots; each plot included 200-300 numbered trees of similar age (approximately 60-80 years). The long-term parameter changes were analyzed and attributed to chronic exposure to industrial air pollution. Significant changes in pine-forest parameters observed over the past few years (2019-2021) may indicate an approaching stage of irreversible toxic damage that is the destruction of the entire forest system. The results encourage involving forest-based bioindication in the regional system of ecological monitoring. Forest-based bioindication can be used as a tool for evaluating the efficiency of long-term governmental activity on air quality in industrial metropolises. Integr Environ Assess Manag 2022;00:1-8. © 2022 SETAC.
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Affiliation(s)
- Galina G Polyakova
- Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russia
| | - Vera A Senashova
- Sukachev Institute of Forest, Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russia
| | - Natalia M Podolyak
- Non-State Educational Institution of Higher Professional Education Siberian Institute of Business, Management and Psychology, Krasnoyarsk, Russia
| | | | - Nadezhda S Kudryasheva
- Siberian Federal University, Krasnoyarsk, Russia
- Institute of Biophysics, Siberian Branch of the Russian Academy of Sciences, Krasnoyarsk, Russia
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Chen SF, Vysotski ES, Liu YJ. H 2O-Bridged Proton-Transfer Channel in Emitter Species Formation in Obelin Bioluminescence. J Phys Chem B 2021; 125:10452-10458. [PMID: 34520210 DOI: 10.1021/acs.jpcb.1c03985] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Bioluminescence of a number of marine organisms is conditioned by Ca2+-regulated photoprotein (CaRP) with coelenterazine as the reaction substrate. The reaction product, coelenteramide, at the first singlet excited state (S1) is the emitter of CaRP. The S1-state coelenteramide is produced via the decomposition of coelenterazine dioxetanone. Experiments suggested that the neutral S1-coelenteramide is the primary emitter species. This supposition contradicts with theoretical calculations showing that the anionic S1-coelenteramide is a primary product of the decomposition of coelenterazine dioxetanone. In this study, applying molecular dynamic (MD) simulations and the hybrid quantum mechanics/molecular mechanics (QM/MM) method, we investigated a proton-transfer (PT) process taking place in CaRP obelin from Obelia longissima for emitter formation. Our calculations demonstrate a concerted PT process with a water molecule as a bridge between anionic S1-coelenteramide and the nearest histidine residue. The low activation barrier as well as the strong hydrogen-bond network between the proton donor and the proton acceptor suggests a fast PT process comparable with that of the lifetime of excited anionic S1-coelenteramide. The existence of the PT process eliminates the discrepancy between experimental and theoretical studies. The fast PT process at emitter formation can also take place in other CaRPs.
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Affiliation(s)
- Shu-Feng Chen
- School of Chemical and Environmental Engineering, Shanghai Institute of Technology, Shanghai 201418, People's Republic of China
| | - Eugene S Vysotski
- Photobiology Laboratory, Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Krasnoyarsk 660036, Russia
| | - Ya-Jun Liu
- Center for Advanced Materials Research, Advanced Institute of Natural Sciences, Beijing Normal University at Zhuhai, Zhuhai 519087, China.,Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University, Beijing 100875, People's Republic of China
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Rozhko TV, Nemtseva EV, Gardt MV, Raikov AV, Lisitsa AE, Badun GA, Kudryasheva NS. Enzymatic Responses to Low-Intensity Radiation of Tritium. Int J Mol Sci 2020; 21:E8464. [PMID: 33187108 PMCID: PMC7696592 DOI: 10.3390/ijms21228464] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2020] [Revised: 11/06/2020] [Accepted: 11/09/2020] [Indexed: 12/12/2022] Open
Abstract
The present study considers a possible role of enzymatic reactions in the adaptive response of cells to the beta-emitting radionuclide tritium under conditions of low-dose exposures. Effects of tritiated water (HTO) on the reactions of bacterial luciferase and NAD(P)H:FMN-oxidoreductase, as well as a coupled system of these two reactions, were studied at radioactivity concentrations ≤ 200 MBq/L. Additionally, one of the simplest enzymatic reactions, photobiochemical proton transfer in Coelenteramide-containing Fluorescent Protein (CLM-FP), was also investigated. We found that HTO increased the activity of NAD(P)H:FMN-oxidoreductase at the initial stage of its reaction (by up to 230%); however, a rise of luciferase activity was moderate (<20%). The CLM-FP samples did not show any increase in the rate of the photobiochemical proton transfer under the exposure to HTO. The responses of the enzyme systems were compared to the 'hormetic' response of luminous marine bacterial cells studied earlier. We conclude that (1) the oxidoreductase reaction contributes significantly to the activation of the coupled enzyme system and bacterial cells by tritium, and (2) an increase in the organization level of biological systems promotes the hormesis phenomenon.
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Affiliation(s)
- Tatiana V. Rozhko
- Department of Medical and Biological Physics, Krasnoyarsk State Medical Academy, 660022 Krasnoyarsk, Russia
| | - Elena V. Nemtseva
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.V.N.); (M.V.G.); (A.V.R.); (A.E.L.); (N.S.K.)
- Institute of Biophysics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia
| | - Maria V. Gardt
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.V.N.); (M.V.G.); (A.V.R.); (A.E.L.); (N.S.K.)
| | - Alexander V. Raikov
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.V.N.); (M.V.G.); (A.V.R.); (A.E.L.); (N.S.K.)
| | - Albert E. Lisitsa
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.V.N.); (M.V.G.); (A.V.R.); (A.E.L.); (N.S.K.)
| | - Gennadii A. Badun
- Department of Chemistry, Moscow State University, 119991 Moscow, Russia;
| | - Nadezhda S. Kudryasheva
- Biophysics Department, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.V.N.); (M.V.G.); (A.V.R.); (A.E.L.); (N.S.K.)
- Institute of Biophysics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia
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Kudryasheva NS, Kovel ES. Monitoring of Low-Intensity Exposures via Luminescent Bioassays of Different Complexity: Cells, Enzyme Reactions, and Fluorescent Proteins. Int J Mol Sci 2019; 20:E4451. [PMID: 31509958 PMCID: PMC6770735 DOI: 10.3390/ijms20184451] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Revised: 09/01/2019] [Accepted: 09/04/2019] [Indexed: 02/06/2023] Open
Abstract
The current paper reviews the applications of luminescence bioassays for monitoring the results of low-intensity exposures which produce a stimulative effect. The impacts of radioactivity of different types (alpha, beta, and gamma) and bioactive compounds (humic substances and fullerenols) are under consideration. Bioassays based on luminous marine bacteria, their enzymes, and fluorescent coelenteramide-containing proteins were used to compare the results of the low-intensity exposures at the cellular, biochemical, and physicochemical levels, respectively. High rates of luminescence response can provide (1) a proper number of experimental results under comparable conditions and, therefore, proper statistical processing, with this being highly important for "noisy" low-intensity exposures; and (2) non-genetic, i.e., biochemical and physicochemical mechanisms of cellular response for short-term exposures. The results of cellular exposures were discussed in terms of the hormesis concept, which implies low-dose stimulation and high-dose inhibition of physiological functions. Dependencies of the luminescence response on the exposure time or intensity (radionuclide concentration/gamma radiation dose rate, concentration of the bioactive compounds) were analyzed and compared for bioassays of different organization levels.
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Affiliation(s)
- Nadezhda S Kudryasheva
- Institute of Biophysics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia.
- Siberian Federal University, Krasnoyarsk 660041, Russia.
| | - Ekaterina S Kovel
- Institute of Biophysics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia
- Institute of Physics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia
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Petrova AS, Lukonina AA, Dementyev DV, Ya Bolsunovsky A, Popov AV, Kudryasheva NS. Protein-based fluorescent bioassay for low-dose gamma radiation exposures. Anal Bioanal Chem 2018; 410:6837-6844. [PMID: 30062510 DOI: 10.1007/s00216-018-1282-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 07/10/2018] [Accepted: 07/17/2018] [Indexed: 01/30/2023]
Abstract
The study suggests an application of a coelenteramide-containing fluorescent protein (CLM-CFP) as a simplest bioassay for gamma radiation exposures. "Discharged obelin," a product of the bioluminescence reaction of the marine coelenterate Obelia longissima, was used as a representative of the CLM-CFP group. The bioassay is based on a simple enzymatic reaction-photochemical proton transfer in the coelenteramide-apoprotein complex. Components of this reaction differ in fluorescence color, providing, by this, an evaluation of the proton transfer efficiency in the photochemical process. This efficiency depends on the microenvironment of the coelenteramide within the protein complex, and, hence, can evaluate a destructive ability of gamma radiation. The CLM-CFP samples were exposed to gamma radiation (137Cs, 2 mGy/h) for 7 and 16 days at 20 °C and 5 °C, respectively. As a result, two fluorescence characteristics (overall fluorescence intensity and contributions of color components to the fluorescence spectra) were identified as bioassay parameters. Both parameters demonstrated high sensitivity of the CLM-CFP-based bioassay to the low-dose gamma radiation exposure (up to 100 mGy). Higher temperature (20 °C) enhanced the response of CLM-CFP to gamma radiation. This new bioassay can provide fluorescent multicolor assessment of protein destruction in cells and physiological liquids under exposure to low doses of gamma radiation. Graphical abstract ᅟ.
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Affiliation(s)
- Alena S Petrova
- Krasnoyarsk State Agrarian University, Mira Avenue 90, Krasnoyarsk, 660049, Russia
| | - Anna A Lukonina
- Siberian Federal University, Svobodnyy Ave 79, Krasnoyarsk, 660041, Russia
| | - Dmitry V Dementyev
- Institute of Biophysics SB RAS, FRC KSC SB RAS, Krasnoyarsk, 660036, Russia
| | | | - Anatoliy V Popov
- Department of Radiology, University of Pennsylvania, 3401 N Broad St., Philadelphia, PA, 19140, USA
| | - Nadezhda S Kudryasheva
- Siberian Federal University, Svobodnyy Ave 79, Krasnoyarsk, 660041, Russia. .,Institute of Biophysics SB RAS, FRC KSC SB RAS, Krasnoyarsk, 660036, Russia.
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