Multivariate classification for the direct determination of cup profile in coffee blends via handheld near-infrared spectroscopy

Differentiation of Listeria monocytogenes serotypes using near infrared hyperspectral imaging

Among the severe foodborne illnesses, listeriosis resulting from the pathogen Listeria monocytogenes exhibits one of the highest fatality rates. This study investigated the application of near infrared hyperspectral imaging (NIR-HSI) for the classification of three L. monocytogenes serotypes namely serotype 4b, 1/2a and 1/2c. The bacteria were cultured on Brain Heart Infusion agar, and NIR hyperspectral images were captured in the spectral range 900-2500 nm. Different pre-processing methods were applied to the raw spectra and principal component analysis was used for data exploration. Classification was achieved with partial least squares discriminant analysis (PLS-DA). The PLS-DA results revealed classification accuracies exceeding 80 % for all the bacterial serotypes for both training and test set data. Based on validation data, sensitivity values for L. monocytogenes serotype 4b, 1/2a and 1/2c were 0.69, 0.80 and 0.98, respectively when using full wavelength data. The reduced wavelength model had sensitivity values of 0.65, 0.85 and 0.98 for serotype 4b, 1/2a and 1/2c, respectively. The most relevant bands for serotype discrimination were identified to be around 1490 nm and 1580-1690 nm based on both principal component loadings and variable importance in projection scores. The outcomes of this study demonstrate the feasibility of utilizing NIR-HSI for detecting and classifying L. monocytogenes serotypes on growth media.

An overview on the Brazilian Coffea canephora scenario and the current chemometrics-based spectroscopic research

This review explores the historical, botanical, sensory, and quality aspects of Coffea canephora, with a focus on Brazil's rise as a producer of specialty canephora coffees in the Amazon region, Espírito Santo, and Bahia. Brazil has gained global recognition through the first geographical indications for canephora: Matas de Rondônia for robusta amazônico coffee and Espírito Santo for conilon coffee. Despite this, comprehensive insights into how variety, terroir, environmental conditions, and cultivation practices influence the chemical and sensory attributes of Brazilian canephora remain underdeveloped compared to well-studied arabica coffee. Producers and researchers are working to elevate canephora coffees to higher market levels, despite technological, production, and perception challenges stemming from its historical reputation for poor quality. Ensuring the sustainability of Amazonian canephora coffee without deforestation is particularly challenging due to the need to verify practices across numerous small-scale farms. There is also a critical need for standardized production and tasting protocols for Brazilian canephora, leveraging local expertise and professional cuppers to ensure consistent quality and reliable sustainability claims. Significant opportunities exist in valuing the production chain of geographically unique canephora coffees, which could increase specialty exports, enhance economic prospects for local farmers, and support Amazon preservation. Recognizing and marketing these coffees as premium products with unique flavor profiles can boost their global appeal. Another challenge lies in establishing new specialty standards for soluble coffee from specialty canephora to meet consumer demands for convenience without compromising taste or ethical standards. In such a scenario, several analytical methods have been suggested to identify high-quality variants, combating their stigmatization. The potential of spectroscopy techniques and chemometrics-based data science is highlighted in confirming coffee quality, authenticity, traceability, and geographical origin, enhancing model interpretation and predictive accuracy through synergistic and complementary information. Non-targeted spectroscopic analyses, providing comprehensive spectral fingerprints, are contrasted with targeted analyses. Overall, this review offers valuable insights for the coffee scientific community, exporters, importers, roasters, and consumers in recognizing the potential of Brazilian canephora coffees.

Accurate identification of methanol and ethanol gasoline types and rapid detection of the alcohol content using effective chemical information

Methanol and ethanol gasoline are two emerging clean energy sources with different characteristics. To achieve the qualitative identification and quantitative analysis of the alcohols present in methanol and ethanol gasoline, effective chemical information (ECI) models based on the characteristic spectral bands of the near-infrared (NIR) spectra of the methanol and ethanol molecules were developed using the partial least squares discriminant analysis (PLS-DA) and partial least squares (PLS) algorithms. The ECI model was further compared with models built from the full wavenumber (Full) spectra, variable importance in projection (VIP) spectra, and Monte Carlo uninformative variable elimination (MC-UVE) spectra to determine the predictive performance of ECI model. Among the various qualitative identification models, it was found that the ECI-PLS-DA model, which is built using the differences in molecular chemical information between methanol and ethanol, exhibited sensitivity, specificity and accuracy values of 100%. The ECI-PLS-DA model accurately identified methanol gasoline and ethanol gasoline with different contents. In the quantitative analysis model for methanol gasoline, the methanol gasoline and ethanol gasoline ECI-PLS models exhibited the smallest root mean squared error of predictions (RMSEP) of 0.18 and 0.21% (v/v), respectively, compared to the other models. Meanwhile, the F-test and T-test results revealed that the NIR method employing the ECI-PLS model showed no significant difference compared to the standard method. Compared with other spectral models examined herein, the ECI model demonstrated the highest recognition success and determination accuracy. This study therefore established a highly accurate and rapid determination model for the qualitative identification and quantitative analysis based on chemical structures. It is expected that this model could be extended to the NIR analysis of other physicochemical properties of fuel.

Analytical Chemistry Strategies in the Use of Miniaturised NIR Instruments: An Overview

Miniaturized NIR instruments have been increasingly used in the last years, and they have become useful tools for many applications on a broad variety of samples. This review focuses on miniaturized NIR instruments from an analytical point of view, to give an overview of the analytical strategies used in order to help the reader to set up their own analytical methods, from the sampling to the data analysis. It highlights the uses of these instruments, providing a critical discussion including current and future trends.

Authentication and discrimination of new Brazilian Canephora coffees with geographical indication using a miniaturized near-infrared spectrometer

New Brazilian Canephora coffees (Conilon and Robusta) of high added value from specific origins have been protected by geographical indication to guarantee their origin and quality. Recently, benchtop near-infrared (NIR) spectroscopy combined with chemometrics has demonstrated its usefulness to discriminate them. It was the first study, however, and therefore the possibility exists to develop a new portable NIR method for this purpose. This work assessed a miniaturized NIR as a cheaper spectrometer to discriminate and authenticate new Brazilian Canephora coffees with certified geographical origins and to differentiate them from specialty Arabica. Discriminant chemometric and class modeling techniques have been applied and have obtained good predictive ability on external test sets. In addition, models with similar classification purpose were compared with those obtained in previous research carried out with benchtop NIR for the same samples, obtaining comparable results. In this context, the portable method was used as a laboratory technique and has the advantage of being cheaper than benchtop NIR spectrometer. Furthermore, it brings a high possibility to be implemented in small coffee cooperatives, industries or control agencies in the future that do not have high economic resources.

Portable NIR spectroscopy: the route to green analytical chemistry

There is a growing interest for cost-effective and nondestructive analytical techniques in both research and application fields. The growing approach by near-infrared spectroscopy (NIRs) pushes to develop handheld devices devoted to be easily applied for in situ determinations. Consequently, portable NIR spectrometers actually result definitively recognized as powerful instruments, able to perform nondestructive, online, or in situ analyses, and useful tools characterized by increasingly smaller size, lower cost, higher robustness, easy-to-use by operator, portable and with ergonomic profile. Chemometrics play a fundamental role to obtain useful and meaningful results from NIR spectra. In this review, portable NIRs applications, published in the period 2019-2022, have been selected to indicate starting references. These publications have been chosen among the many examples of the most recent applications to demonstrate the potential of this analytical approach which, not having the need for extraction processes or any other pre-treatment of the sample under examination, can be considered the "true green analytical chemistry" which allows the analysis where the sample to be characterized is located. In the case of industrial processes or plant or animal samples, it is even possible to follow the variation or evolution of fundamental parameters over time. Publications of specific applications in this field continuously appear in the literature, often in unfamiliar journal or in dedicated special issues. This review aims to give starting references, sometimes not easy to be found.

Chemical analysis and NIR spectroscopy in the determination of the origin, variety and roast time of Mexican coffee

Coffee is a product whose quality and price are associated with its geographical, genetic and processing origin; therefore, the development of analytical techniques to authenticate the above mentioned is important to avoid adulteration. The objective of this study was to compare conventional analytical methods with NIR technology for the authentication of roasted and ground coffee samples from different producing regions in Mexico (origins) and different varieties. A second objective was to determine, under the same processing conditions, if roasting times can be differentiated by using this technology. A total of 120 samples of roasted and ground commercial coffee were obtained from the states of Chiapas, Oaxaca, Tabasco and Veracruz in Mexico, 30 locally available samples per state. Samples from Veracruz included three different varieties, grown on the same farm and processed under the same conditions. One of these varieties was selected to evaluate the chemical composition of samples roasted at 185 °C using four different roasting times (15, 17, 19 and 21 min). Samples from different producing regions showed significant differences (P < 0.05) in fat content (from 7.45 ± 0.42% in Tabasco to 18.40 ± 2.95% in Chiapas), which was associated with the altitude of coffee plantations (Pearson's r = 0.96). The results indicate that NIR technology generates sufficient useful information to authenticate roasted and ground coffee from different geographical origins in Mexico and different varieties from the same coffee plantation, with similar results to those obtained by conventional analytical methods.

SHS-GC-MS applied in Coffea arabica and Coffea canephora blend assessment

Considering the great economic significance of Coffea arabica (arabica) associated with the lower production cost of C. canephora (conilon), blends of these coffees are commercially available to reduce costs and combine sensory attributes. Thus, analytical tools are required to ensure consistency between real and labeled compositions. In this sense, chromatographic methods based on volatile analysis using static headspace-gas chromatography-mass spectrometry (SHS-GC-MS) and Fourier transform infrared (FTIR) spectroscopy associated with chemometric tools were proposed for the identification and quantification of arabica and conilon blends. The peak integration from the total ion chromatogram (TIC) and extracted ion chromatogram (EIC) was compared in multivariate and univariate scenarios. The optimized partial least squares (PLS) models with uninformative variable elimination (UVE) and chromatographic data (TIC and EIC) have similar accuracy according to a randomized test, with prediction errors between 3.3% and 4.7% and R_p² > 0.98. There was no difference between the univariate models for the TIC and EIC, but the FTIR model presented a lower performance than GC-MS. The multivariate and univariate models based on chromatographic data had similar accuracy. For the classification models, the FTIR, TIC, and EIC data presented accuracies from 96% to 100% and error rates from 0% to 5%. Multivariate and univariate analyses combined with chromatographic and spectroscopic data allow the investigation of coffee blends.

Development of PCA-MLP Model Based on Visible and Shortwave Near Infrared Spectroscopy for Authenticating Arabica Coffee Origins

Arabica coffee, one of Indonesia's economically important coffee commodities, is commonly subject to fraud due to mislabeling and adulteration. In many studies, spectroscopic techniques combined with chemometric methods have been massively employed in classification issues, such as principal component analysis (PCA) and discriminant analyses, compared to machine learning models. In this study, spectroscopy combined with PCA and a machine learning algorithm (artificial neural network, ANN) were developed to verify the authenticity of Arabica coffee collected from four geographical origins in Indonesia, including Temanggung, Toraja, Gayo, and Kintamani. Spectra from pure green coffee were collected from Vis-NIR and SWNIR spectrometers. Several preprocessing techniques were also applied to attain precise information from spectroscopic data. First, PCA compressed spectroscopic information and generated new variables called PCs scores, which would become inputs for the ANN model. The discrimination of Arabica coffee from different origins was conducted with a multilayer perceptron (MLP)-based ANN model. The accuracy attained ranged from 90% to 100% in the internal cross-validation, training, and testing sets. The error in the classification process did not exceed 10%. The generalization ability of the MLP combined with PCA was superior, suitable, and successful for verifying the origin of Arabica coffee.

Discrimination of Robusta Amazônico coffee farmed by indigenous and non-indigenous people in Amazon: comparing benchtop and portable NIR using ComDim and duplex

Robusta Amazônico is the name given to the Amazonian coffee that has been becoming popular and has recently been registered as a geographical indication in Brazil. It is produced by indigenous and non-indigenous coffee producers in regions that are geographically very close to one another. There is a need to authenticate whether coffee is truly produced by indigenous people and near-infrared (NIR) spectroscopy is an excellent technique for this. To meet the substantial trend towards NIR spectroscopy miniaturization, this work compared benchtop and portable NIR instruments to discriminate Robusta Amazônico samples using partial least squares discriminant analysis (PLS-DA). To ensure the results to be fairly comparable and, at the same time, to guarantee representative selection of both training and test set for the discriminant analysis, a sample selection strategy based on coupling ComDim multi-block analysis and the duplex algorithm was applied. Different pre-processing techniques were tested to create multiple matrices to be used in ComDim, as well as to build the discriminant models. The best PLS-DA model for benchtop NIR provided an accuracy of 96% for the test samples, while for the portable NIR the correct classification rate was 92%. It was demonstrated that portable NIR provides similar results to benchtop NIR for coffee origin classification by performing an unbiased sample selection strategy.

Quantitative analysis of index factors in agricultural compost by infrared spectroscopy

Hyperspectral technology, with its high spectrum resolution and nanometer continuous spectral information acquisition ability, provide a possibility for rapidly and nondestructive evaluating compost maturity. In this study, the near-infrared spectroscopy (NIRS) analysis techniques was used to analyze quantitatively organic matter (OM) content, total nitrogen (TN) content and carbon-nitrogen (C/N) ratio in compost based on two different composting procedures. In the basis of spectra preprocessing and strategies of variable selection, the nonlinear modeling LBC-siPLS-PLSR for OM, MSC-SPA-PLSR for TN and R-SPA-PLSR for C/N ratio was respectively constructed using partial least squares regression (PLSR). LBC-siPLS-PLSR, MSC-SPA-PLSR and R-SPA-PLSR provided a better prediction capability with root mean square error of prediction, the coefficient of determination for prediction and residual predictive deviation values of 4.061, 0.746 and 2.02 for OM, values of 0.205, 0.65 and 1.71 for TN and values of 1.11, 0.706 and 2.07 for C/N ratio, respectively. These results showed that the NIRS technique could be fitted to each element, using specific spectrum pretreatment, in order to achieve an acceptable accuracy in the prediction.

Infrared-Photoacoustic Spectroscopy and Multiproduct Multivariate Calibration to Estimate the Proportion of Coffee Defects in Roasted Samples

Infrared-photoacoustic spectroscopy (IR-PAS) and partial least squares (PLS) were tested as a rapid alternative to conventional methods to evaluate the proportion of coffee defects in roasted and ground coffees. Multiproduct multivariate calibration models were obtained from spectra of healthy beans of Coffea canephora and C. arabica (Arabica) and blends composed of defective and healthy beans of Arabica in different proportions. The blends, named selections, contained sour, black, broken, whole beans, skin, and coffee woods. Six models were built using roasted and ground coffee samples. The model was optimized through outlier evaluation, and the parameters of merit such as accuracy, sensitivity, limits of detection and quantification, the inverse of analytical sensitivity, linearity, and adjustment were computed. The models presented predictive capacity and high sensitivity in determining defects, all being predicted with suitable correlation coefficients (ranging from 0.7176 to 0.8080) and presenting adequate performance. The parameters of merit displayed promising results, and the prediction models developed for %defects can be safely used as an alternative to the reference method. Furthermore, the new method is fast, efficient, and suitable for in-line application in quality control industrial coffee processing.

Artificial intelligence technologies in bioprocess: Opportunities and challenges

Bioprocess control and optimization are crucial for tapping the metabolic potential of microorganisms, and which have made great progress in the past decades. Combination of the current control and optimization technologies with the latest computer-based strategies will be a worth expecting way to improve bioprocess further. Recently, artificial intelligence (AI) emerged as a data-driven technique independent of the complex interactions used in mathematical models and has been gradually applied in bioprocess. In this review, firstly, AI-guided modeling approaches of bioprocess are discussed, which are widely applied to optimize critical process parameters (CPPs). Then, AI-assisted rapid detection and monitoring technologies employed in bioprocess are summarized. Next, control strategies according to the above two technologies in bioprocess are analyzed. Lastly, current research gaps and future perspectives on AI-guided optimization and control technologies are discussed. This review provides theoretical guidance for developing AI-guided bioprocess optimization and control technologies.

Exploring the Analytical Complexities in Insect Powder Analysis Using Miniaturized NIR Spectroscopy

Insects have been a food source for humans for millennia, and they are actively consumed in various parts of the world. This paper aims to ascertain the feasibility of portable near-infrared (NIR) spectroscopy as a reliable and fast candidate for the classification of insect powder samples and the prediction of their major components. Commercially-available insect powder samples were analyzed using two miniaturized NIR instruments. The samples were analyzed as they are and after grinding, to study the effect of the granulometry on the spectroscopic analyses. A homemade sample holder was designed and optimized for making reliable spectroscopic measurements. Classification was then performed using three classification strategies, and partial least squares (PLS) regression was used to predict the macronutrients. The results obtained confirmed that both spectroscopic sensors were able to classify insect powder samples and predict macronutrients with an adequate detection limit.

A Systematic Mapping Study of Coffee Quality throughout the Production-to-Consumer Chain

Coffee is one of the most consumed beverages in the world and is crucial in the economy of many developing countries. The search to improve coffee quality comes from many fronts, as do the many ways to measure quality and the factors that affect it. Several techniques are used to measure the different metrics to assess coffee quality, across different types of coffee samples and species, and throughout the entire process from farm to cup. In this work, we conducted a systematic mapping study of 1,470 articles to identify the aspects of quality that are the most important in the scientific literature to evaluate coffee throughout the processing chain. The study revealed that cup quality and biochemical composition are the most researched quality attributes. The main objective of the reviewed studies is the correlation between different quality measurements. The most used techniques are the analytical chemistry methods. The most studied species is Coffea arabica. The most used sample presentation is green coffee. The postharvest stage is the most researched, in which quality control receives more attention. In the preharvest stage, management practices stand out. Finally, the most used type of research was the evaluation research.

Rapid Determination of Cellulose and Hemicellulose Contents in Corn Stover Using Near-Infrared Spectroscopy Combined with Wavelength Selection

The contents of cellulose and hemicellulose (C and H) in corn stover (CS) have an important influence on its biochemical transformation and utilization. To rapidly detect the C and H contents in CS by near-infrared spectroscopy (NIRS), the characteristic wavelength selection algorithms of backward partial least squares (BIPLS), competitive adaptive reweighted sampling (CARS), BIPLS combined with CARS, BIPLS combined with a genetic simulated annealing algorithm (GSA), and CARS combined with a GSA were used to select the wavelength variables (WVs) for C and H, and the corresponding regression correction models were established. The results showed that five wavelength selection algorithms could effectively eliminate irrelevant redundant WVs, and their modeling performance was significantly superior to that of the full spectrum. Through comparison and analysis, it was found that CARS combined with GSA had the best comprehensive performance; the predictive root mean squared errors of the C and H regression model were 0.786% and 0.893%, and the residual predictive deviations were 3.815 and 12.435, respectively. The wavelength selection algorithm could effectively improve the accuracy of the quantitative analysis of C and H contents in CS by NIRS, providing theoretical support for the research and development of related online detection equipment.

Prediction of specialty coffee flavors based on near-infrared spectra using machine- and deep-learning methods

BACKGROUND

Specialty coffee fascinates people with its bountiful flavors. Currently, flavor descriptions of specialty coffee beans are only offered by certified coffee cuppers. However, such professionals are rare, and the market demand is tremendous. The hypothesis of this study was to investigate the feasibility to train machine learning (ML) and deep learning (DL) models for predicting the flavors of specialty coffee using near-infrared spectra of ground coffee as the input. Successful model development would provide a new and objective framework to predict complex flavors in food and beverage products.

RESULTS

In predicting seven categories of coffee flavors, the models developed using the ML method (i.e. support vector machine) and the deep convolutional neural network (DCNN) achieved similar performance, with the recall and accuracy being 70-73% and 75-77% respectively. Through the proposed visualization method - a focusing plot - the potential correlation among the highly weighted spectral region of the DCNN model, the predicted flavor categories, and the corresponding chemical composition are presented.

CONCLUSION

This study has proven the feasibility of applying ML and DL methods on the near-infrared spectra of ground coffee to predict specialty coffee flavors. The effective models provided moderate prediction for seven flavor categories based on 266 samples. The results of classification and visualization indicate that the DCNN model developed is a promising and explainable method for coffee flavor prediction. © 2021 Society of Chemical Industry.

Rapid determination of lignocellulose in corn stover based on near-infrared reflectance spectroscopy and chemometrics methods

In this study, a rapid detection method based on near-infrared reflectance spectroscopy was proposed for measuring the contents of cellulose, hemicellulose and lignin in corn stover. In the basis of strategies of variable selection, feature extraction and nonlinear modeling, BiPLS-PCA-SVM was constructed using backward interval partial least squares combined with principal component analysis and support vector machine, which was used to improve the performance of spectral regression calibration model. For BiPLS-PCA-SVM model, the determination coefficients, root mean squared error and residual predictive deviation for the validation set were 0.906, 0.900% and 3.213 for cellulose; 0.987, 0.797% and 9.071 for hemicellulose; and 0.936, 0.264% and 4.024 for lignin, correspondingly. The results indicate that near-infrared reflectance spectroscopy combined with BiPLS-PCA-SVM can provide a reliable alternative strategy to detect contents of lignocellulosic components for pretreated corn stover in the anaerobic digestion process.