1
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Meuskens I, Kristiansen PE, Bardiaux B, Koynarev VR, Hatlem D, Prydz K, Lund R, Izadi-Pruneyre N, Linke D. A poly-proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions. FEBS J 2024; 291:761-777. [PMID: 37953437 DOI: 10.1111/febs.17001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 10/25/2023] [Accepted: 11/09/2023] [Indexed: 11/14/2023]
Abstract
Poly-proline II helices are secondary structure motifs frequently found in ligand-binding sites. They exhibit increased flexibility and solvent exposure compared to the strongly hydrogen-bonded α-helices or β-strands and can therefore easily be misinterpreted as completely unstructured regions with an extremely high rotational freedom. Here, we show that the adhesin YadA of Yersinia enterocolitica serotype O:9 contains a poly-proline II helix interaction motif in the N-terminal region. The motif is involved in the interaction of YadAO:9 with heparin, a host glycosaminoglycan. We show that the basic residues within the N-terminal motif of YadA are required for electrostatic interactions with the sulfate groups of heparin. Biophysical methods including CD spectroscopy, solution-state NMR and SAXS all independently support the presence of a poly-proline helix allowing YadAO:9 binding to the rigid heparin. Lastly, we show that host cells deficient in sulfation of heparin and heparan sulfate are not targeted by YadAO:9 -mediated adhesion. We speculate that the YadAO:9 -heparin interaction plays an important and highly strain-specific role in the pathogenicity of Yersinia enterocolitica serotype O:9.
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Affiliation(s)
- Ina Meuskens
- Department of Biosciences, University of Oslo, Norway
| | | | - Benjamin Bardiaux
- Structural Bioinformatics Unit, CNRS UMR3528, Institut Pasteur, Université de Paris-Cité, France
| | | | - Daniel Hatlem
- Department of Biosciences, University of Oslo, Norway
| | | | - Reidar Lund
- Department of Chemistry, University of Oslo, Norway
| | - Nadia Izadi-Pruneyre
- Bacterial Transmembrane Systems Unit, CNRS UMR3528, Institut Pasteur, Université de Paris-Cité, France
| | - Dirk Linke
- Department of Biosciences, University of Oslo, Norway
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2
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Sande MG, Roque L, Braga A, Marques M, Ferreira D, Saragliadis A, Rodrigues JL, Linke D, Ramada D, Silva C, Rodrigues LR. Design of new hydrolyzed collagen-modified magnetic nanoparticles to capture pathogens. J Biomed Mater Res B Appl Biomater 2023; 111:354-365. [PMID: 36063491 DOI: 10.1002/jbm.b.35155] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2022] [Revised: 07/28/2022] [Accepted: 08/17/2022] [Indexed: 12/15/2022]
Abstract
Enrichment and diagnosis tools for pathogens currently available are time consuming, thus the development of fast and highly sensitive alternatives is desirable. In this study, a novel approach was described that enables selective capture of bacteria expressing hydrolyzed collagen-binding adhesins with hydrolyzed collagen-coated magnetic nanoparticles (MNPs). This platform could be useful to shorten the time needed to confirm the presence of a bacterial infection. MNPs were synthesized by a simple two-step approach through a green co-precipitation method using water as solvent. These MNPs were specifically designed to interact with pathogenic bacteria by establishing a hydrolyzed collagen-adhesin linker. The bacterial capture efficacy of hydrolyzed collagen MNPs (H-Coll@MNPs) for bacteria expressing collagen binding adhesins was 1.3 times higher than that of arginine MNPs (Arg@MNPs), herein used as control. More importantly, after optimization of the MNP concentration and contact time, the H-Coll@MNPs were able to capture 95% of bacteria present in the samples. More importantly, the bacteria can be enriched within 30 min and the time for bacterial identification is effectively shortened in comparison to the "gold standard" in clinical diagnosis. These results suggest that H-Coll@MNPs can be used for the selective isolation of specific bacteria from mixed populations present, for example, in biological samples.
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Affiliation(s)
- Maria G Sande
- CEB-Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.,LABBELS - Associate Laboratory, Braga/Guimarães, Portugal
| | - Lúcia Roque
- CENTI-Center for Nanotechnology and Smart Materials, Vila Nova de Famalicão, Portugal
| | - Adelaide Braga
- CEB-Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.,LABBELS - Associate Laboratory, Braga/Guimarães, Portugal
| | - Márcia Marques
- CENTI-Center for Nanotechnology and Smart Materials, Vila Nova de Famalicão, Portugal
| | - Débora Ferreira
- CEB-Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.,LABBELS - Associate Laboratory, Braga/Guimarães, Portugal
| | - Athanasios Saragliadis
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway
| | - Joana L Rodrigues
- CEB-Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.,LABBELS - Associate Laboratory, Braga/Guimarães, Portugal
| | - Dirk Linke
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway
| | - David Ramada
- CENTI-Center for Nanotechnology and Smart Materials, Vila Nova de Famalicão, Portugal
| | - Carla Silva
- CENTI-Center for Nanotechnology and Smart Materials, Vila Nova de Famalicão, Portugal.,CITEVE-Technological Center for the Textile and Clothing Industries of Portugal, Vila Nova de Famalicão, Portugal
| | - Lígia R Rodrigues
- CEB-Centre of Biological Engineering, Universidade do Minho, Braga, Portugal.,LABBELS - Associate Laboratory, Braga/Guimarães, Portugal
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3
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Meuskens I, Leva-Bueno J, Millner P, Schütz M, Peyman SA, Linke D. The Trimeric Autotransporter Adhesin YadA of Yersinia enterocolitica Serotype O:9 Binds Glycan Moieties. Front Microbiol 2022; 12:738818. [PMID: 35178035 PMCID: PMC8844515 DOI: 10.3389/fmicb.2021.738818] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2021] [Accepted: 12/06/2021] [Indexed: 11/29/2022] Open
Abstract
Yersinia adhesin A (YadA) is a key virulence factor of Yersinia enterocolitica and Yersinia pseudotuberculosis. YadA is a trimeric autotransporter adhesin, a class of adhesins that have been shown to enable many Gram-negative pathogens to adhere to/interact with the host extracellular matrix proteins such as collagen, vitronectin, and fibronectin. Here, we show for the first time that YadA of Yersinia enterocolitica serotype O:9 not only interacts with proteinaceous surface molecules but can also attach directly to glycan moieties. We show that YadA from Y. enterocolitica serotype O:9 does not interact with the vitronectin protein itself but exclusively with its N-linked glycans. We also show that YadA can target other glycan moieties as found in heparin, for example. So far, little is known about specific interactions between bacterial autotransporter adhesins and glycans. This could potentially lead to new antimicrobial treatment strategies, as well as diagnostic applications.
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Affiliation(s)
- Ina Meuskens
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway
| | - Juan Leva-Bueno
- Faculty of Biological Sciences, School of Biomedical Sciences, University of Leeds, Leeds, United Kingdom
| | - Paul Millner
- Faculty of Biological Sciences, School of Biomedical Sciences, University of Leeds, Leeds, United Kingdom
| | - Monika Schütz
- Interfakultäres Institut für Mikrobiologie und Infektionsmedizin Tübingen (IMIT), Institut für Medizinische Mikrobiologie und Hygiene, Universität Tübingen, Tübingen, Germany
| | - Sally A. Peyman
- Molecular and Nanoscale Physics Group, Department of Physics and Astronomy, University of Leeds, Leeds, United Kingdom
| | - Dirk Linke
- Section for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway
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4
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Wimmi S, Balinovic A, Jeckel H, Selinger L, Lampaki D, Eisemann E, Meuskens I, Linke D, Drescher K, Endesfelder U, Diepold A. Dynamic relocalization of cytosolic type III secretion system components prevents premature protein secretion at low external pH. Nat Commun 2021; 12:1625. [PMID: 33712575 PMCID: PMC7954860 DOI: 10.1038/s41467-021-21863-4] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 02/12/2021] [Indexed: 01/31/2023] Open
Abstract
Many bacterial pathogens use a type III secretion system (T3SS) to manipulate host cells. Protein secretion by the T3SS injectisome is activated upon contact to any host cell, and it has been unclear how premature secretion is prevented during infection. Here we report that in the gastrointestinal pathogens Yersinia enterocolitica and Shigella flexneri, cytosolic injectisome components are temporarily released from the proximal interface of the injectisome at low external pH, preventing protein secretion in acidic environments, such as the stomach. We show that in Yersinia enterocolitica, low external pH is detected in the periplasm and leads to a partial dissociation of the inner membrane injectisome component SctD, which in turn causes the dissociation of the cytosolic T3SS components. This effect is reversed upon restoration of neutral pH, allowing a fast activation of the T3SS at the native target regions within the host. These findings indicate that the cytosolic components form an adaptive regulatory interface, which regulates T3SS activity in response to environmental conditions.
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Affiliation(s)
- Stephan Wimmi
- Department of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Alexander Balinovic
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Department of Physics, Mellon College of Science, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Hannah Jeckel
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Lisa Selinger
- Department of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
| | - Dimitrios Lampaki
- Department of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Max-Planck-Institut für Immunbiologie und Epigenetik, Freiburg, Germany
| | - Emma Eisemann
- Department of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- James Madison University, Harrisonburg, VA, USA
| | - Ina Meuskens
- Department of Biosciences, University of Oslo, Oslo, Norway
| | - Dirk Linke
- Department of Biosciences, University of Oslo, Oslo, Norway
| | - Knut Drescher
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Department of Physics, Philipps-Universität Marburg, Marburg, Germany
| | - Ulrike Endesfelder
- Max Planck Institute for Terrestrial Microbiology, Marburg, Germany
- Department of Physics, Mellon College of Science, Carnegie Mellon University, Pittsburgh, PA, USA
| | - Andreas Diepold
- Department of Ecophysiology, Max Planck Institute for Terrestrial Microbiology, Marburg, Germany.
- SYNMIKRO, LOEWE Center for Synthetic Microbiology, Marburg, Germany.
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5
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Martin H, Somers T, Dwyer M, Robson R, Pfeffer FM, Bjornsson R, Krämer T, Kavanagh K, Velasco-Torrijos T. Scaffold diversity for enhanced activity of glycosylated inhibitors of fungal adhesion. RSC Med Chem 2020; 11:1386-1401. [PMID: 34095846 DOI: 10.1039/d0md00224k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Accepted: 08/11/2020] [Indexed: 12/20/2022] Open
Abstract
Candida albicans is one of the most prevalent fungal pathogens involved in hospital acquired infections. It binds to glycans at the surface of epithelial cells and initiates infection. This process can be blocked by synthetic carbohydrates that mimic the structure of cell surface glycans. Herein we report the evaluation of a series of divalent glycosides featuring aromatic (benzene, squaramide) and bicyclic aliphatic (norbornene) scaffolds, with the latter being the first examples of their kind as small molecule anti-adhesion glycoconjugates. Galactosides 1 and 6, built on an aromatic core, were most efficient inhibitors of adhesion of C. albicans to buccal epithelial cells, displacing up to 36% and 48%, respectively, of yeast already attached to epithelial cells at 138 μM. Remarkably, cis-endo-norbornene 21 performed comparably to benzene-core derivatives. Conformational analysis reveals a preference for compounds 1 and 21 to adopt folded conformations. These results highlight the potential of norbornenes as a new class of aliphatic scaffolds for the synthesis of anti-adhesion compounds.
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Affiliation(s)
- Harlei Martin
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland
| | - Tara Somers
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland
| | - Mathew Dwyer
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland
| | - Ryan Robson
- School of Life and Environmental Sciences, Deakin University Geelong Victoria 3217 Australia
| | - Frederick M Pfeffer
- School of Life and Environmental Sciences, Deakin University Geelong Victoria 3217 Australia
| | - Ragnar Bjornsson
- Department of Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion Stiftstrasse 34-36 45470 Mülheim an der Ruhr Germany
| | - Tobias Krämer
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland .,The Hamilton Institute, Maynooth University Maynooth Co. Kildare Ireland
| | - Kevin Kavanagh
- Department of Biology, Maynooth University Maynooth Co. Kildare Ireland.,The Kathleen Lonsdale Institute for Human Health Research, Maynooth University Maynooth Co. Kildare Ireland
| | - Trinidad Velasco-Torrijos
- Department of Chemistry, Maynooth University Maynooth Co. Kildare Ireland .,The Kathleen Lonsdale Institute for Human Health Research, Maynooth University Maynooth Co. Kildare Ireland
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6
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Finke S, Fagerlund A, Smith V, Krogstad V, Zhang MJ, Saragliadis A, Linke D, Nielsen-LeRoux C, Økstad OA. Bacillus thuringiensis CbpA is a collagen binding cell surface protein under c-di-GMP control. ACTA ACUST UNITED AC 2019; 5:100032. [PMID: 32803021 PMCID: PMC7423583 DOI: 10.1016/j.tcsw.2019.100032] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2018] [Revised: 06/24/2019] [Accepted: 07/05/2019] [Indexed: 12/12/2022]
Abstract
Cyclic diguanylate (c-di-GMP) signalling affects several cellular processes in Bacillus cereus group bacteria including biofilm formation and motility, and CdgF was previously identified as a diguanylate cyclase promoting biofilm formation in B. thuringiensis. C-di-GMP can exert its function as a second messenger via riboswitch binding, and a functional c-di-GMP-responsive riboswitch has been found upstream of cbpA in various B. cereus group strains. Protein signature recognition predicted CbpA to be a cell wall-anchored surface protein with a fibrinogen or collagen binding domain. The aim of this study was to identify the binding ligand of CbpA and the function of CbpA in cellular processes that are part of the B. cereus group c-di-GMP regulatory network. By global gene expression profiling cbpA was found to be down-regulated in a cdgF deletion mutant, and cbpA exhibited maximum expression in early exponential growth. Contrary to the wild type, a ΔcbpA deletion mutant showed no binding to collagen in a cell adhesion assay, while a CbpA overexpression strain exhibited slightly increased collagen binding compared to the control. For both fibrinogen and fibronectin there was however no change in binding activity compared to controls, and CbpA did not appear to contribute to binding to abiotic surfaces (polystyrene, glass, steel). Also, the CbpA overexpression strain appeared to be less motile and showed a decrease in biofilm formation compared to the control. This study provides the first experimental proof that the binding ligand of the c-di-GMP regulated adhesin CbpA is collagen.
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Affiliation(s)
- Sarah Finke
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
| | - Annette Fagerlund
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
| | - Veronika Smith
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
| | - Veronica Krogstad
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
| | - Mimmi Jingxi Zhang
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
| | | | - Dirk Linke
- Department of Biosciences, University of Oslo, Norway
| | | | - Ole Andreas Økstad
- Centre for Integrative Microbial Evolution and Section for Pharmaceutical Biosciences, Department of Pharmacy, University of Oslo, Norway
- Corresponding author at: Department of Pharmacy, University of Oslo, PB 1068 Blindern, 0371 Blindern, Norway.
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