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Costa FLP, de Albuquerque ACF, Fiorot RG, Lião LM, Martorano LH, Mota GVS, Valverde AL, Carneiro JWM, dos Santos Junior FM. Structural characterisation of natural products by means of quantum chemical calculations of NMR parameters: new insights. Org Chem Front 2021. [DOI: 10.1039/d1qo00034a] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
In this review, we focus in all aspects of NMR simulation of natural products, from the fundamentals to the new computational toolboxes available, combining advanced quantum chemical calculations with upstream data processing and machine learning.
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Affiliation(s)
| | - Ana C. F. de Albuquerque
- Departamento de Química Orgânica
- Instituto de Química
- Universidade Federal Fluminense
- Niterói-RJ
- Brazil
| | - Rodolfo G. Fiorot
- Departamento de Química Orgânica
- Instituto de Química
- Universidade Federal Fluminense
- Niterói-RJ
- Brazil
| | - Luciano M. Lião
- Instituto de Química
- Universidade Federal de Goiás
- 74690-900 Goiânia-GO
- Brazil
| | - Lucas H. Martorano
- Departamento de Química Orgânica
- Instituto de Química
- Universidade Federal Fluminense
- Niterói-RJ
- Brazil
| | - Gunar V. S. Mota
- Faculdade de Ciências Naturais/Instituto de Ciências Exatas e Naturais
- Universidade Federal do Pará
- Belém-PA
- Brazil
| | - Alessandra L. Valverde
- Departamento de Química Orgânica
- Instituto de Química
- Universidade Federal Fluminense
- Niterói-RJ
- Brazil
| | - José W. M. Carneiro
- Departamento de Química Inorgânica
- Instituto de Química
- Universidade Federal Fluminense
- Niterói-RJ
- Brazil
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Siskos MG, Varras PC, Gerothanassis IP. DFT calculations of O–H⋯O 1H NMR chemical shifts in investigating enol-enol tautomeric equilibria: Probing the impacts of intramolecular hydrogen bonding vs stereoelectronic interactions. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.130979] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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3
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Peng YJ, Jiang YX, Peng X, Liu JY, Lai WP. Reaction Mechanism of 3,4-Dinitrofuroxan Formation from Glyoxime: Dehydrogenation and Cyclization of Oxime. Chemphyschem 2016; 17:541-7. [DOI: 10.1002/cphc.201500968] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2015] [Revised: 11/30/2015] [Indexed: 11/12/2022]
Affiliation(s)
- Ya-Jing Peng
- Department of Physics; Bohai University; Jinzhou 121013 China
- State Key Laboratory of Molecular Reaction Dynamics; Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
| | - Yan-Xue Jiang
- Department of Physics; Bohai University; Jinzhou 121013 China
| | - Xie Peng
- State Key Laboratory of Molecular Reaction Dynamics; Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
| | - Jian-Yong Liu
- State Key Laboratory of Molecular Reaction Dynamics; Dalian Institute of Chemical Physics; Chinese Academy of Sciences; Dalian 116023 China
| | - Wei-Peng Lai
- Xi'an Modern Chemistry Research Institute; Xi'an 710065 China
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Diwaker. Spectroscopic (FT-IR, (1)H, (13)C NMR, UV), DOS and orbital overlap population analysis of copper complex of (E)-4-(2-(4-nitrophenyl) diazenyl)-N, N bis ((pyridin-2-yl) methyl) benzamine by density functional theory. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt C:1932-1940. [PMID: 25467688 DOI: 10.1016/j.saa.2014.10.110] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Revised: 10/14/2014] [Accepted: 10/23/2014] [Indexed: 06/04/2023]
Abstract
The geometric parameters, chemical shifts, FTIR, NMR and orbital overlap population along with DOS (density of states) to know different kinds of interactions for binding of copper atom with (E)-4-(2-(4-nitrophenyl) diazenyl)-N, N bis ((pyridin-2-yl) methyl) benzamine to form its copper complex has been reported by DFT methods. The theoretically predicted values for structural parameters are in agreement with the experimentally reported values. NMR chemical shifts calculated using B3LYP/DFT/GIAO level of theory gives information about binding of copper atom with three nitrogen atoms namely N (3, 8 and 11). Orbital overlap population analysis using DFT/B3LYP/SDD level of theory is used to study the kind of interactions involved in binding of copper with the three nitrogen atoms. DOS studies are done to know about the contribution of alpha, beta electrons to the valence and conduction band. IR spectroscopy investigations gave the absorption bands for the formation of title compound. Electronic spectrum along with HOMO-LUMO energies of the title compound has been investigated using Time-dependent (TD-DFT) approach.
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Sukalovic V, Bogdan AE, Tovilovic G, Ignjatovic D, Andric D, Kostic-Rajacic S, Soskic V. N-{[2-(4-Phenyl-piperazin-1-yl)-ethyl]-phenyl}-arylamides with Dopamine D2and 5-Hydroxytryptamine 5HT1AActivity: Synthesis, Testing, and Molecular Modeling. Arch Pharm (Weinheim) 2013; 346:708-17. [DOI: 10.1002/ardp.201300189] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2013] [Revised: 07/22/2013] [Accepted: 07/26/2013] [Indexed: 11/08/2022]
Affiliation(s)
| | | | - Gordana Tovilovic
- Department of Biochemistry; Institute for Biological Research; University of Belgrade; Belgrade Serbia
| | - Djurdjica Ignjatovic
- Department of Biochemistry; Institute for Biological Research; University of Belgrade; Belgrade Serbia
| | - Deana Andric
- Faculty of Chemistry; University of Belgrade; Belgrade Serbia
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Mai TT, Viswambharan B, Gori D, Kouklovsky C, Alezra V. Memory of Chirality of Tertiary Aromatic Amide: Application to the Asymmetric Synthesis of (S)-α-MethylDOPA. J Org Chem 2012; 77:8797-801. [DOI: 10.1021/jo301588t] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Thi Thoa Mai
- Laboratoire de Chimie des
Procédés et
Substances Naturelles, Univ Paris-Sud,
Laboratoire de Chimie des Procédés et Substances Naturelles,
ICMMO, UMR 8182, CNRS, Bât 410, Orsay F-91405, France
| | - Baby Viswambharan
- Laboratoire de Chimie des
Procédés et
Substances Naturelles, Univ Paris-Sud,
Laboratoire de Chimie des Procédés et Substances Naturelles,
ICMMO, UMR 8182, CNRS, Bât 410, Orsay F-91405, France
| | - Didier Gori
- Laboratoire de Chimie des
Procédés et
Substances Naturelles, Univ Paris-Sud,
Laboratoire de Chimie des Procédés et Substances Naturelles,
ICMMO, UMR 8182, CNRS, Bât 410, Orsay F-91405, France
| | - Cyrille Kouklovsky
- Laboratoire de Chimie des
Procédés et
Substances Naturelles, Univ Paris-Sud,
Laboratoire de Chimie des Procédés et Substances Naturelles,
ICMMO, UMR 8182, CNRS, Bât 410, Orsay F-91405, France
| | - Valérie Alezra
- Laboratoire de Chimie des
Procédés et
Substances Naturelles, Univ Paris-Sud,
Laboratoire de Chimie des Procédés et Substances Naturelles,
ICMMO, UMR 8182, CNRS, Bât 410, Orsay F-91405, France
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Mai TT, Branca M, Gori D, Guillot R, Kouklovsky C, Alezra V. Absolute Asymmetric Synthesis of Tertiary α-Amino Acids. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201200950] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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8
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Mai TT, Branca M, Gori D, Guillot R, Kouklovsky C, Alezra V. Absolute Asymmetric Synthesis of Tertiary α-Amino Acids. Angew Chem Int Ed Engl 2012; 51:4981-4. [DOI: 10.1002/anie.201200950] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2012] [Indexed: 11/11/2022]
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Lodewyk MW, Siebert MR, Tantillo DJ. Computational prediction of 1H and 13C chemical shifts: a useful tool for natural product, mechanistic, and synthetic organic chemistry. Chem Rev 2011; 112:1839-62. [PMID: 22091891 DOI: 10.1021/cr200106v] [Citation(s) in RCA: 897] [Impact Index Per Article: 69.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Michael W Lodewyk
- Department of Chemistry, University of California-Davis, Davis, California 95616, USA
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Farran D, Archirel P, Toupet L, Martinez J, Dewynter G. Enantiodivergent Transannular Rearrangement of 3-Isopropyl-1,4-benzodiazepine-2,5-dione by Memory of Chirality. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100030] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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11
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Branca M, Pena S, Guillot R, Gori D, Alezra V, Kouklovsky C. Memory of Chirality of Tertiary Aromatic Amides: A Simple and Efficient Method for the Enantioselective Synthesis of Quaternary α-Amino Acids. J Am Chem Soc 2009; 131:10711-8. [DOI: 10.1021/ja9039604] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mathieu Branca
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
| | - Sébastien Pena
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
| | - Régis Guillot
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
| | - Didier Gori
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
| | - Valérie Alezra
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
| | - Cyrille Kouklovsky
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université de Paris-Sud, F-91405 Orsay, France
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Branca M, Gori D, Guillot R, Alezra V, Kouklovsky C. Tertiary Aromatic Amide for Memory of Chirality: Access to Enantioenriched α-Substituted Valine. J Am Chem Soc 2008; 130:5864-5. [DOI: 10.1021/ja801165z] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Mathieu Branca
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université Paris-Sud, F-91405 Orsay, France
| | - Didier Gori
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université Paris-Sud, F-91405 Orsay, France
| | - Régis Guillot
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université Paris-Sud, F-91405 Orsay, France
| | - Valérie Alezra
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université Paris-Sud, F-91405 Orsay, France
| | - Cyrille Kouklovsky
- Laboratoire de Chimie des Procédés et Substances Naturelles, ICMMO, CNRS UMR 8182, Bât 410, Université Paris-Sud, F-91405 Orsay, France
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