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Zhao H. Recent advances in enzymatic carbon-carbon bond formation. RSC Adv 2024; 14:25932-25974. [PMID: 39161440 PMCID: PMC11331486 DOI: 10.1039/d4ra03885a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Accepted: 08/06/2024] [Indexed: 08/21/2024] Open
Abstract
Enzymatic carbon-carbon (C-C) bond formation reactions have become an effective and invaluable tool for designing new biological and medicinal molecules, often with asymmetric features. This review provides a systematic overview of key C-C bond formation reactions and enzymes, with the focus of reaction mechanisms and recent advances. These reactions include the aldol reaction, Henry reaction, Knoevenagel condensation, Michael addition, Friedel-Crafts alkylation and acylation, Mannich reaction, Morita-Baylis-Hillman (MBH) reaction, Diels-Alder reaction, acyloin condensations via Thiamine Diphosphate (ThDP)-dependent enzymes, oxidative and reductive C-C bond formation, C-C bond formation through C1 resource utilization, radical enzymes for C-C bond formation, and other C-C bond formation reactions.
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Affiliation(s)
- Hua Zhao
- Department of Bioproducts and Biosystems Engineering, University of Minnesota St. Paul MN 55108 USA
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2
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Navaser A, Kalhor HR, Hayati F. Developing and enhancing promiscuous activity for NAD(P)H-dependent flavin reductase via elimination of cofactor. Heliyon 2023; 9:e19315. [PMID: 37809429 PMCID: PMC10558354 DOI: 10.1016/j.heliyon.2023.e19315] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2023] [Revised: 08/02/2023] [Accepted: 08/18/2023] [Indexed: 10/10/2023] Open
Abstract
Promiscuous enzymes have shown their synthetic abilities in generating various organic compounds with high selectively and efficiency under mild conditions. Therefore, the design and development of conditions to raise promiscuity to the enzymes have been under the spotlight in recent years. Flavin reductase, that reduces flavins by using NADH as a cofactor, has not been studied in promiscuous reactions. In the present study, it was aimed to develop a catalytic promiscuous activity in the recombinant E.coli flavin reductase by removing its cofactor. The flavin reductase demonstrated a promiscuous activity for Knoevenagel condensation and Michael addition reactions individually. The cofactor-independent promiscuous activity of the flavin reductase was further enhanced by altering the reaction conditions to proceed a Knoevenagel-Michael addition cascade for tetraketone synthesis. Yet, the presence of the cofactor blocked the promiscuous Knoevenagel condensation, Michael addition, and therefore the cascade reaction, demonstrating that the removal of NADH was pivotal in inducing the promiscuous activity. Furthermore, molecular docking and MD simulations were performed to obtain more structural and mechanistic details of the transformation. The computational studies identified the most likely catalytic sites of the flavin reductase in the reaction. Additionally, a truncated variant of the enzyme that lacked 28 residues from the C-terminus displayed comparable activity to the wild-type enzyme, indicating the robustness of the enzyme in performing the cascade reaction. In brief, the cofactor-elimination method presented in this work could be considered as a straightforward and economical approach for inducing enzyme promiscuity in promoting organic transformations.
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Affiliation(s)
- Amene Navaser
- Biochemistry and Chemical Biology Research Laboratory, Chemistry Department, Sharif University of Technology, Tehran, Iran
| | - Hamid R. Kalhor
- Biochemistry and Chemical Biology Research Laboratory, Chemistry Department, Sharif University of Technology, Tehran, Iran
| | - Fatemeh Hayati
- Biochemistry and Chemical Biology Research Laboratory, Chemistry Department, Sharif University of Technology, Tehran, Iran
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3
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Synthesis of 3,4-Dihydropyridin-2-ones via Domino Reaction under Phase Transfer Catalysis Conditions. Catalysts 2023. [DOI: 10.3390/catal13010170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
3,4-dihydropyridin-2-ones are of considerable importance due to the large number of these core structures exhibiting a diverse array of biological and pharmacological activities. The Michael-type addition of 1,3-dithiane-2-carbothioates to α,β-unsaturated N-tosyl imines, followed by intramolecular annulation driven by a sulfur leaving group, provides a practical reaction cascade for the synthesis of a variety of substituted 3,4-dihydropyridin-2-ones. In this work, the reaction was carried out under solid–liquid phase transfer catalysis (SL-PTC) conditions at room temperature, in short reaction times in the presence of cheap Bu4N+HSO4– and solid KOH. The new PTC method exhibited adequate functional group tolerance, proving to be a green and reliable method and easy to scale up to furnish rapid access to 3,4-dihydropyridin-2-ones after desulfurization from simple, readily available starting materials.
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4
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Crystal Structure and Hirshfeld Surface Analysis of Acetoacetanilide Based Reaction Products. Molecules 2020; 25:molecules25092235. [PMID: 32397450 PMCID: PMC7248728 DOI: 10.3390/molecules25092235] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 05/05/2020] [Accepted: 05/06/2020] [Indexed: 11/17/2022] Open
Abstract
We report an unprecedented multicomponent reaction of acetoacetanilide with malononitrile leading to a structurally novel bicyclic product (9) in a high yield. The structure has been confirmed by X-ray crystallography and comparative Hirshfeld surface analysis of 5-cyano-2-hydroxy-2-methyl-N-phenyl-4-(yridine-4-yl)-6-(thiophen-2-yl)-3,4-dihydro-2H-pyran-3-carboxamide 2, 5-cyano-2-hydroxy-2-methyl-6-oxo-N-phenyl-4-(thiophen-2-yl)piperidine-3-carboxamide 4 and 2-(8-amino-7,8a-dicyano-1-imino-4a-methyl-3-oxo-2-phenyl-1,3,4,4a,5,8a-hexahydroisoquinolin-6(2H)-ylidene)-N-phenylacetamide 9.
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5
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Green catalyst-free one-pot synthesis of novel tetrahydropyridine-3-carboxamides by microwave-assisted approach. J CHEM SCI 2020. [DOI: 10.1007/s12039-019-1725-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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6
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Promiscuous enzyme-catalyzed cascade reaction in water: Synthesis of dicoumarol derivatives. Bioorg Med Chem Lett 2019; 29:1236-1240. [DOI: 10.1016/j.bmcl.2019.03.007] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Revised: 03/02/2019] [Accepted: 03/05/2019] [Indexed: 01/24/2023]
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7
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Naghiyev FN, Maharramov AM, Asadov KA, Mamedov IG. Rearrangement in the Series of Acetyltetrahydropyridine Derivatives. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2019. [DOI: 10.1134/s1070428019030217] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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8
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Ding X, Zhang XD, Dong CL, Guan Z, He YH. Enzyme-Catalyzed Cascade Michael/Cyclization Reaction for the Synthesis of 3,4-Dihydropyran Derivatives by Using a Protease. Catal Letters 2017. [DOI: 10.1007/s10562-017-2275-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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9
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10
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Chen XY, Wang JL, Lin XF, Wu Q. Lipase-initiated one-pot synthesis of spirooxazino derivatives: redesign of multicomponent reactions to expand substrates scope and application potential. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.04.060] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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11
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Meng T, Liu L, Jia H, Ren L, Feng C, Wang X, Zhao W. One-pot synthesis of 3,4-dihydropyridin-2-ones via tandem reaction of Blaise reactionintermediate and acrylic ester. Appl Organomet Chem 2015. [DOI: 10.1002/aoc.3399] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Tuanjie Meng
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Lantao Liu
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Huiyi Jia
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Lifeng Ren
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Cuilan Feng
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Xiaojuan Wang
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
| | - Wenxian Zhao
- Key Laboratory of New Organic Materials Synthesis; College of Chemistry and Chemical Engineering, Shangqiu Normal University; Shangqiu 476000 PR China
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12
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Lipase-catalyzed Knoevenagel condensation in water–ethanol solvent system. Does the enzyme possess the substrate promiscuity? Biochem Eng J 2015. [DOI: 10.1016/j.bej.2015.04.021] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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13
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López-Iglesias M, Gotor-Fernández V. Recent Advances in Biocatalytic Promiscuity: Hydrolase-Catalyzed Reactions for Nonconventional Transformations. CHEM REC 2015; 15:743-59. [PMID: 26147872 DOI: 10.1002/tcr.201500008] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2015] [Indexed: 01/03/2023]
Abstract
Enzymes have emerged in recent decades as ideal catalysts for synthetic transformations under mild reaction conditions. Their capacity to accelerate a myriad of biotransformations with high levels of selectivity and broad substrate specificity including excellent atom economy has led to a current full recognition. The six classes of enzymes (oxidoreductases, transferases, hydrolases, lyases, isomerases and ligases) possess outstanding abilities to perform specific modifications in target molecules. Nevertheless, in the last fifteen years, novel examples have appeared related to nonconventional processes catalyzed by various classes of biocatalysts. Amongst these, hydrolases have received special attention since they display remarkable activities in initially unexpected reactions such as carbon-carbon and carbon-heteroatom bond-formation reactions, oxidative processes and novel hydrolytic transformations. In this review, the main findings in this area will be disclosed, highlighting the catalytic properties of hydrolases not only to catalyze single processes but also multicomponent and tandem nonconventional reactions.
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Affiliation(s)
- María López-Iglesias
- Organic and Inorganic Chemistry Department, Biotechnology Institute of Asturias, Universidad de Oviedo, Avenida Julián Clavería s/n, Oviedo, 33006, Spain
| | - Vicente Gotor-Fernández
- Organic and Inorganic Chemistry Department, Biotechnology Institute of Asturias, Universidad de Oviedo, Avenida Julián Clavería s/n, Oviedo, 33006, Spain
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14
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Rai VK, Sahu GP, Rai A. The first NHC-induced regioselective introduction of C- and N-nucleophiles in to Baylis–Hillman enals. Tetrahedron Lett 2015. [DOI: 10.1016/j.tetlet.2015.03.101] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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15
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Bansal D, Hundal G, Gupta R. A Metalloligand Appended with Thiazole Rings: Heterometallic {Co
3+
–Zn
2+
} and {Co
3+
–Cd
2+
} Complexes and Their Heterogeneous Catalytic Applications. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201403072] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Deepak Bansal
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Geeta Hundal
- Department of Chemistry, Guru Nanak Dev University, Amritsar, Punjab 143005, India
| | - Rajeev Gupta
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
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16
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Liu ZQ, Hu YJ, Chen XY, Wu Q, Lin XF. Enzymatic multicomponent reaction for simultaneous synthesis of two important scaffolds, pyridin-2-ones and α-alkylated nitriles. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.12.021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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17
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Liang YR, Chen XY, Wu Q, Lin XF. Diastereoselective synthesis of spirooxindole derivatives via biocatalytic domino reaction. Tetrahedron 2015. [DOI: 10.1016/j.tet.2014.12.027] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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18
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Srivastava S, Dagur MS, Gupta R. Two‐Dimensional {Co
3+
–Co
2+
} and {Fe
3+
–Co
2+
} Networks and Their Heterogeneous Catalytic Activities. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402375] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Sumit Srivastava
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Manvender Singh Dagur
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
| | - Rajeev Gupta
- Department of Chemistry, University of Delhi, Delhi 110007, India, http://people.du.ac.in/~rgupta/
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19
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Li W, Fedosov SN, Tan T, Xu X, Guo Z. Kinetic Insights of DNA/RNA Segment Salts Catalyzed Knoevenagel Condensation Reaction. ACS Catal 2014. [DOI: 10.1021/cs500882r] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Weina Li
- Department
of Engineering, Faculty of Science and Technology, Aarhus University, Gustav
Wied Vej 10, Aarhus 8000, Denmark
- College of Life Science and Technology, Beijing University of Chemical Technology, Beisanhuan East Road 15, Beijing 100029, China
| | - Sergey N. Fedosov
- Department
of Engineering, Faculty of Science and Technology, Aarhus University, Gustav
Wied Vej 10, Aarhus 8000, Denmark
| | - Tianwei Tan
- College of Life Science and Technology, Beijing University of Chemical Technology, Beisanhuan East Road 15, Beijing 100029, China
| | - Xuebing Xu
- Department
of Engineering, Faculty of Science and Technology, Aarhus University, Gustav
Wied Vej 10, Aarhus 8000, Denmark
| | - Zheng Guo
- Department
of Engineering, Faculty of Science and Technology, Aarhus University, Gustav
Wied Vej 10, Aarhus 8000, Denmark
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20
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One-Pot Synthesis of Spirooxazino DerivativesviaEnzyme- Initiated Multicomponent Reactions. Adv Synth Catal 2014. [DOI: 10.1002/adsc.201300965] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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21
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Voskressensky LG, Festa AA, Varlamov AV. Domino reactions based on Knoevenagel condensation in the synthesis of heterocyclic compounds. Recent advances. Tetrahedron 2014. [DOI: 10.1016/j.tet.2013.11.011] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
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22
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Xiang Z, Liu Z, Liang Y, Wu Q, Lin X. L-Lysine/imidazole-catalyzed Multicomponent Cascade Reaction: Facile Synthesis of C5-substituted 3-Methylcyclohex-2-enones. CHINESE J CHEM 2013. [DOI: 10.1002/cjoc.201300367] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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23
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Biocatalysts for cascade reaction: porcine pancreas lipase (PPL)-catalyzed synthesis of bis(indolyl)alkanes. Amino Acids 2013; 45:937-45. [DOI: 10.1007/s00726-013-1547-4] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2013] [Accepted: 06/25/2013] [Indexed: 10/26/2022]
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24
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Liu ZQ, Xiang ZW, Wu Q, Lin XF. Unexpected three-component domino synthesis of pyridin-2-ones catalyzed by promiscuous acylase in non-aqueous solvent. Biochimie 2013; 95:1462-5. [PMID: 23567338 DOI: 10.1016/j.biochi.2013.03.012] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2013] [Accepted: 03/25/2013] [Indexed: 11/28/2022]
Abstract
The Acylase "Amano" (AA)-catalyzed synthesis of valuable pyridin-2-ones via domino Knoevenagel condensation-Michael addition-intramolecular cyclization-oxidization reaction between aldehyde, cyanoacetamide and ethyl acetoacetate or cyclohexyl acetoacetate was developed in the sense of a one-pot strategy. Various aliphatic, aromatic and hetero-aromatic pyridin-2-ones could also be produced in the reaction. The mechanism was illustrated according to the controlled reaction, pyridin-2-one was formed via the oxidization by oxygen at the final step. This simple and efficient enzymatic domino reaction not only widens its application of AA to organic synthesis, but is also an attractive way for the synthesis of heterocyclic compounds.
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Affiliation(s)
- Zhi-Qiang Liu
- Department of Chemistry, Zhejiang University, No. 38 Zheda Road, Hangzhou 310027, People's Republic of China
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25
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Luo J, Xin T, Wang Y. A PEG bridged tertiary amine functionalized ionic liquid exhibiting thermoregulated reversible biphasic behavior with cyclohexane/isopropanol: synthesis and application in Knoevenagel condensation. NEW J CHEM 2013. [DOI: 10.1039/c2nj40890b] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Pradhan K, Bhattacharyya P, Paul S, Das AR. Synthesis of 3,4-dihydropyridin-2-one derivatives in convergent mode applying bio catalyst vitamin B1 and polymer supported catalyst PEG–SO3H from two different sets of building blocks. Tetrahedron Lett 2012. [DOI: 10.1016/j.tetlet.2012.08.030] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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27
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Singh AK, Chawla R, Rai A, Yadav LDS. NHC-catalysed diastereoselective synthesis of multifunctionalised piperidines via cascade reaction of enals with azalactones. Chem Commun (Camb) 2012; 48:3766-8. [PMID: 22399056 DOI: 10.1039/c2cc00069e] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
NHC-catalysed azalactone ring-opening and piperidine ring-closing cascade with α,β-unsaturated aldehydes (enals) in a one-pot operation is reported. The present reaction cascade offers a convenient method for a highly diastereoselective synthesis of multifunctionalised piperidines in excellent yields under mild conditions.
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Affiliation(s)
- Atul K Singh
- Green Synthesis Lab, Department of Chemistry, University of Allahabad, Allahabad-211002, India
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