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Ditzler RAJ, King AJ, Towell SE, Ratushnyy M, Zhukhovitskiy AV. Editing of polymer backbones. Nat Rev Chem 2023; 7:600-615. [PMID: 37542179 DOI: 10.1038/s41570-023-00514-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/12/2023] [Indexed: 08/06/2023]
Abstract
Polymers are at the epicentre of modern technological progress and the associated environmental pollution. Considerations of both polymer functionality and lifecycle are crucial in these contexts, and the polymer backbone - the core of a polymer - is at the root of these considerations. Just as the meaning of a sentence can be altered by editing its words, the function and sustainability of a polymer can also be transformed via the chemical modification of its backbone. Yet, polymer modification has primarily been focused on the polymer periphery. In this Review, we focus on the transformations of the polymer backbone by defining some concepts fundamental to this topic (for example, 'polymer backbone' and 'backbone editing') and by collecting and categorizing examples of backbone editing scattered throughout a century's worth of chemical literature, and outline critical directions for further research. In so doing, we lay the foundation for the field of polymer backbone editing and hope to accelerate its development.
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Affiliation(s)
- Rachael A J Ditzler
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Andrew J King
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Sydney E Towell
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
| | - Maxim Ratushnyy
- Department of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA
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Blake TR, Ho WC, Turlington CR, Zang X, Huttner MA, Wender PA, Waymouth RM. Synthesis and mechanistic investigations of pH-responsive cationic poly(aminoester)s. Chem Sci 2020; 11:2951-2966. [PMID: 34122796 PMCID: PMC8157522 DOI: 10.1039/c9sc05267d] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 02/04/2020] [Indexed: 01/24/2023] Open
Abstract
The synthesis and degradation mechanisms of a class of pH-sensitive, rapidly degrading cationic poly(α-aminoester)s are described. These reactive, cationic polymers are stable at low pH in water, but undergo a fast and selective degradation at higher pH to liberate neutral diketopiperazines. Related materials incorporating oligo(α-amino ester)s have been shown to be effective gene delivery agents, as the charge-altering degradative behavior facilitates the delivery and release of mRNA and other nucleic acids in vitro and in vivo. Herein, we report detailed studies of the structural and environmental factors that lead to these rapid and selective degradation processes in aqueous buffers. At neutral pH, poly(α-aminoester)s derived from N-hydroxyethylglycine degrade selectively by a mechanism involving sequential 1,5- and 1,6-O→N acyl shifts to generate bis(N-hydroxyethyl) diketopiperazine. A family of structurally related cationic poly(aminoester)s was generated to study the structural influences on the degradation mechanism, product distribution, and pH dependence of the rate of degradation. The kinetics and mechanism of the pH-induced degradations were investigated by 1H NMR, model reactions, and kinetic simulations. These results indicate that polyesters bearing α-ammonium groups and appropriately positioned N-hydroxyethyl substituents are readily cleaved (by intramolecular attack) or hydrolyzed, representing dynamic "dual function" materials that are initially polycationic and transform with changing environment to neutral products.
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Affiliation(s)
- Timothy R Blake
- Department of Chemistry, Stanford University Stanford CA 94305 USA
| | - Wilson C Ho
- Department of Chemistry, Stanford University Stanford CA 94305 USA
| | | | - Xiaoyu Zang
- Department of Chemistry, Stanford University Stanford CA 94305 USA
| | | | - Paul A Wender
- Department of Chemistry, Stanford University Stanford CA 94305 USA
- Department of Chemical and Systems Biology, Stanford University Stanford CA 94305 USA
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Benner NL, McClellan RL, Turlington CR, Haabeth OAW, Waymouth RM, Wender PA. Oligo(serine ester) Charge-Altering Releasable Transporters: Organocatalytic Ring-Opening Polymerization and their Use for in Vitro and in Vivo mRNA Delivery. J Am Chem Soc 2019; 141:8416-8421. [PMID: 31083999 PMCID: PMC7209379 DOI: 10.1021/jacs.9b03154] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
RNA technology is transforming life science research and medicine, but many applications are limited by the accessibility, cost, efficacy, and tolerability of delivery systems. Here we report the first members of a new class of dynamic RNA delivery vectors, oligo(serine ester)-based charge-altering releasable transporters (Ser-CARTs). Composed of lipid-containing oligocarbonates and cationic oligo(serine esters), Ser-CARTs are readily prepared (one flask) by a mild ring-opening polymerization using thiourea anions and, upon simple mixing with mRNA, readily form complexes that degrade to neutral serine-based products, efficiently releasing their mRNA cargo. mRNA/Ser-CART transfection efficiencies of >95% are achieved in vitro. Intramuscular or intravenous (iv) injections of mRNA/Ser-CARTs into living mice result in in vivo expression of a luciferase reporter protein, with spleen localization observed after iv injection.
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Affiliation(s)
- Nancy L. Benner
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Rebecca L. McClellan
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | | | - Ole A. W. Haabeth
- Department of Medicine, Division of Oncology, Stanford Cancer Institute, Stanford University, Stanford, California 94305, United States
| | - Robert M. Waymouth
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Paul A. Wender
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Department of Chemical and Systems Biology, Stanford University, Stanford, California 94305, United States
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Koga T, Aso E, Higashi N. Novel Self-Assembling Amino Acid-Derived Block Copolymer with Changeable Polymer Backbone Structure. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:12378-12386. [PMID: 27340892 DOI: 10.1021/acs.langmuir.6b01617] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Block copolymers have attracted much attention as potentially interesting building blocks for the development of novel nanostructured materials in recent years. Herein, we report a new type of self-assembling block copolymer with changeable polymer backbone structure, poly(Fmoc-Ser)ester-b-PSt, which was synthesized by combining the polycondensation of 9-fluorenylmethoxycarbonyl-serine (Fmoc-Ser) with the reversible addition-fragmentation chain transfer (RAFT) polymerization of styrene (St). This block copolymer showed the direct conversion of the backbone structure from polyester to polypeptide through a multi O,N-acyl migration triggered by base-induced deprotection of Fmoc groups in organic solvent. Such polymer-to-polymer conversion was found to occur quantitatively without decrease in degree of polymerization and to cause a drastic change in self-assembling property of the block copolymer. On the basis of several morphological analyses using FTIR spectroscopy, atomic force, and transmission and scanning electron microscopies, the resulting peptide block copolymer was found to self-assemble into a vesicle-like hollow nanosphere with relatively uniform diameter of ca. 300 nm in toluene. In this case, the peptide block generated from polyester formed β-sheet structure, indicating the self-assembly via peptide-guided route. We believe the findings presented in this study offer a new concept for the development of self-assembling block copolymer system.
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Affiliation(s)
- Tomoyuki Koga
- Department of Molecular Chemistry and Biochemistry, Faculty of Science & Engineering, Doshisha University , Kyotanabe, Kyoto 610-0321, Japan
| | - Eri Aso
- Department of Molecular Chemistry and Biochemistry, Faculty of Science & Engineering, Doshisha University , Kyotanabe, Kyoto 610-0321, Japan
| | - Nobuyuki Higashi
- Department of Molecular Chemistry and Biochemistry, Faculty of Science & Engineering, Doshisha University , Kyotanabe, Kyoto 610-0321, Japan
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Kalistratova A, Legrand B, Verdié P, Naydenova E, Amblard M, Martinez J, Subra G. A switchable stapled peptide. J Pept Sci 2016; 22:143-8. [PMID: 26785930 DOI: 10.1002/psc.2851] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2015] [Revised: 12/13/2015] [Accepted: 12/15/2015] [Indexed: 11/06/2022]
Abstract
The O-N acyl transfer reaction has gained significant popularity in peptide and medicinal chemistry. This reaction has been successfully applied to the synthesis of difficult sequence-containing peptides, cyclic peptides, epimerization-free fragment coupling and more recently, to switchable peptide polymers. Herein, we describe a related strategy to facilitate the synthesis and purification of a hydrophobic stapled peptide. The staple consists of a serine linked through an amide bond formed from its carboxylic acid function and the side chain amino group of diaminopropionic acid and through an ester bond formed from its amino group and the side chain carboxylic acid function of aspartic acid. The α-amino group of serine was protonated during purification. Interestingly, when the peptide was placed at physiological pH, the free amino group initiated the O-N shift reducing the staple length by one atom, leading to a more hydrophobic stapled peptide.
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Affiliation(s)
- Aleksandra Kalistratova
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France.,University of Chemical Technology and Metallurgy, Sophia, Bulgaria
| | - Baptiste Legrand
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France
| | - Pascal Verdié
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France
| | - Emilia Naydenova
- University of Chemical Technology and Metallurgy, Sophia, Bulgaria
| | - Muriel Amblard
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France
| | - Jean Martinez
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France
| | - Gilles Subra
- Institut des Biomolécules Max Mousseron (IBMM), UMR5247 CNRS, ENSCM, Université de Montpellier, 15 avenue Charles Flahault, 34000, Montpellier, France
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Jebors S, Ciccione J, Al-Halifa S, Nottelet B, Enjalbal C, M'Kadmi C, Amblard M, Mehdi A, Martinez J, Subra G. A New Way to Silicone-Based Peptide Polymers. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411065] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Jebors S, Ciccione J, Al-Halifa S, Nottelet B, Enjalbal C, M'Kadmi C, Amblard M, Mehdi A, Martinez J, Subra G. A New Way to Silicone-Based Peptide Polymers. Angew Chem Int Ed Engl 2015; 54:3778-82. [DOI: 10.1002/anie.201411065] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Revised: 12/22/2014] [Indexed: 12/24/2022]
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N- and O-acetylation of threonine residues in the context of proteomics. J Proteomics 2014; 108:369-72. [DOI: 10.1016/j.jprot.2014.06.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2014] [Revised: 05/07/2014] [Accepted: 06/09/2014] [Indexed: 11/20/2022]
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