1
|
Mohamed M, Abrigach F, El Kadiri S, Omar Said Hassane S, Abdellattif MH, Touzani R. Pyrazole, imidazole and triazole: In silico, docking and ADMET studies against SARS-CoV-2. MATERIALS TODAY. PROCEEDINGS 2023; 72:3686-3695. [PMID: 36101672 PMCID: PMC9458701 DOI: 10.1016/j.matpr.2022.09.060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The Coronavirus pandemic, Covid-19 and SARS-Cov-2 put multidisciplinary research by chemists, biologists, pharmacists and theorists necessary and primordial task to find new active biomolecules which will be beneficial for all humanity. The azoles drugs are electronic rich, they should be used with caution, and an understanding of their pharmacokinetic profile, safety, absorption, distribution, excretion, metabolism, toxicity, and drug-drug interaction profiles is important to provide effective and cure therapy. In these objectives and goals, twenty aromatic nitrogen heterocycle compounds were chosen for in silico, docking and AMET studies against SARS-CoV-2. In this paper with respect to the protein S of SARS-CoV-2 properties, the GAUSSIAN 09w program used in the semi-empirical method at the AM1 level with the optimization of the geometry of the structures. Then Toxicity and physicochemical properties were evaluated by AMET. Molecular docking investigations conducted; the binding affinities as well as interactions of the sieve compounds with the SRAS-CoV-2 protein Spike using PyRx software. In general, the preliminary results are fructuous and needs further in vitro testes.
Collapse
Affiliation(s)
- Mounir Mohamed
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco,Corresponding author
| | - Farid Abrigach
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
| | - Sghir El Kadiri
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
| | | | | | - Rachid Touzani
- University Mohammed Premier, Faculty of Sciences, Department of Chemistry, Laboratory of Applied Chemistry and Environment (LCAE), Oujda, Morocco
| |
Collapse
|
2
|
Rosadoni E, Banchini F, Bellini S, Lessi M, Pasquinelli L, Bellina F. Ligandless Palladium-Catalyzed Direct C-5 Arylation of Azoles Promoted by Benzoic Acid in Anisole. Molecules 2022; 27:molecules27238454. [PMID: 36500546 PMCID: PMC9735507 DOI: 10.3390/molecules27238454] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2022] [Revised: 11/26/2022] [Accepted: 11/30/2022] [Indexed: 12/12/2022] Open
Abstract
The palladium-catalyzed direct arylation of azoles with (hetero)aryl halides is nowadays one of the most versatile and efficient procedures for the selective synthesis of heterobiaryls. Although this procedure is, due to its characteristics, also of great interest in the industrial field, the wide use of a reaction medium such as DMF or DMA, two polar aprotic solvents coded as dangerous according to environmental, health, safety (EHS) parameters, strongly limits its actual use. In contrast, the use of aromatic solvents as the reaction medium for direct arylations, although some of them show good EHS values, is poorly reported, probably due to their low solvent power against reagents and their potential involvement in undesired side reactions. In this paper we report an unprecedented selective C-5 arylation procedure involving anisole as an EHS green reaction solvent. In addition, the beneficial role of benzoic acid as an additive was also highlighted, a role that had never been previously described.
Collapse
Affiliation(s)
- Elisabetta Rosadoni
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Federico Banchini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Sara Bellini
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Marco Lessi
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Luca Pasquinelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
| | - Fabio Bellina
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, Via Moruzzi 13, 56124 Pisa, Italy
- Consorzio C.I.N.M.P.I.S., Via E. Orabona 4, 70125 Bari, Italy
- Correspondence:
| |
Collapse
|
3
|
An Insight into All Tested Small Molecules against Fusarium oxysporum f. sp. Albedinis: A Comparative Review. Molecules 2022; 27:molecules27092698. [PMID: 35566050 PMCID: PMC9099577 DOI: 10.3390/molecules27092698] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2022] [Revised: 04/18/2022] [Accepted: 04/18/2022] [Indexed: 12/27/2022] Open
Abstract
Bayoud disease affects date palms in North Africa and the Middle East, and many researchers have used various methods to fight it. One of those methods is the chemical use of synthetic compounds, which raises questions centred around the compounds and common features used to prepare targeted molecules. In this review, 100 compounds of tested small molecules, collected from 2002 to 2022 in Web of Sciences, were divided into ten different classes against the main cause of Bayoud disease pathogen Fusarium oxysporum f. sp. albedinis (F.o.a.) with structure-activity relationship (SAR) interpretations for pharmacophore site predictions as (δ-···δ-), where 12 compounds are the most efficient (one compound from each group). The compounds, i.e., (Z)-1-(1.5-Dimethyl-1H-pyrazole-3-yl)-3-hydroxy but-2-en-1-one 7, (Z)-3-(phenyl)-1-(1,5-dimethyl-1H-pyrazole-3-yl)-3-hydroxyprop-2-en-1-one 23, (Z)-1-(1,5-Dimethyl-1H-pyrazole-3-yl)-3-hydroxy-3-(pyridine-2-yl)prop-2-en-1-one 29, and 2,3-bis-[(2-hydroxy-2-phenyl)ethenyl]-6-nitro-quinoxaline 61, have antifungal pharmacophore sites (δ-···δ-) in common in N1---O4, whereas other compounds have only one δ- pharmacophore site pushed by the donor effect of the substituents on the phenyl rings. This specificity interferes in the biological activity against F.o.a. Further understanding of mechanistic drug-target interactions on this subject is currently underway.
Collapse
|
4
|
Sasmal A, Bera JK, Doucet H, Soulé JF. Reactivity of antipyrine and haloantipyrines in Pd-catalyzed C H bond arylations. Tetrahedron Lett 2020. [DOI: 10.1016/j.tetlet.2020.151798] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
|
5
|
Bouchal B, Abrigach F, Takfaoui A, Elidrissi Errahhali M, Elidrissi Errahhali M, Dixneuf PH, Doucet H, Touzani R, Bellaoui M. Identification of novel antifungal agents: antimicrobial evaluation, SAR, ADME-Tox and molecular docking studies of a series of imidazole derivatives. BMC Chem 2019; 13:100. [PMID: 31410411 PMCID: PMC6685181 DOI: 10.1186/s13065-019-0623-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Accepted: 07/31/2019] [Indexed: 02/07/2023] Open
Abstract
Thirty-four imidazole-based compounds synthesized by one-pot catalytic method were evaluated for their antifungal and antibacterial activities against several fungal and bacterial strains. None of the compounds had antibacterial activity. Interestingly, compounds 1, 2, 3, 10 and 15 displayed a strong antifungal activity against all the tested fungal species, while compounds 5, 7, 9, 11, 21 and 27 showed a moderate antifungal activity. To better understand the biological activity of the most active compounds ADME-Tox and molecular docking studies were carried out. Interestingly, compounds 1, 2, 3, 7, 10 and 15 showed excellent bioavailability. In addition, compounds 1, 2 and 3, exhibited good toxicity profiles. Docking studies of the two most active compounds 2 (IC50 of 95 ± 7.07 μM) and 10 (IC50 of 235 ± 7.07 μM) suggested that they might act by inhibiting the fungal lanosterol 14α-demethylase. Therefore, these novel antifungal agents merit further characterization for the development of new antifungal therapeutics.
Collapse
Affiliation(s)
- Btissam Bouchal
- Genetics Unit, Faculty of Medicine and Pharmacy of Oujda, University Mohammed Premier, Oujda, Morocco
| | - Farid Abrigach
- Laboratory of Applied Chemistry & Environment, Faculty of Sciences, University Premier, Oujda, Morocco Mohamed Premier, Oujda, Morocco
| | - Abdelilah Takfaoui
- Laboratory of Applied Chemistry & Environment, Faculty of Sciences, University Premier, Oujda, Morocco Mohamed Premier, Oujda, Morocco
| | - Manal Elidrissi Errahhali
- Genetics Unit, Faculty of Medicine and Pharmacy of Oujda, University Mohammed Premier, Oujda, Morocco
| | | | - Pierre H. Dixneuf
- Institut des Sciences Chimiques de Rennes, UMR 6226, CNRS, Université de Rennes, Rennes, France
| | - Henri Doucet
- Institut des Sciences Chimiques de Rennes, UMR 6226, CNRS, Université de Rennes, Rennes, France
| | - Rachid Touzani
- Laboratory of Applied Chemistry & Environment, Faculty of Sciences, University Premier, Oujda, Morocco Mohamed Premier, Oujda, Morocco
| | - Mohammed Bellaoui
- Genetics Unit, Faculty of Medicine and Pharmacy of Oujda, University Mohammed Premier, Oujda, Morocco
| |
Collapse
|
6
|
Benzai A, Shi X, Derridj F, Roisnel T, Doucet H, Soulé JF. Late-Stage Diversification of Imidazole-Based Pharmaceuticals through Pd-Catalyzed Regioselective C–H Bond Arylations. J Org Chem 2019; 84:13135-13143. [DOI: 10.1021/acs.joc.9b01469] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Amal Benzai
- Univ Rennes, CNRS UMR6226, F-3500 Rennes, France
- Laboratoire de Physique et Chimie des Matériaux (LPCM), UMMTO University, BP 17 RP, 15000 Tizi-Ouzou, Algeria
| | - Xinzhe Shi
- Univ Rennes, CNRS UMR6226, F-3500 Rennes, France
| | - Fazia Derridj
- Laboratoire de Physique et Chimie des Matériaux (LPCM), UMMTO University, BP 17 RP, 15000 Tizi-Ouzou, Algeria
| | | | - Henri Doucet
- Univ Rennes, CNRS UMR6226, F-3500 Rennes, France
| | | |
Collapse
|
7
|
Abrigach F, Rokni Y, Takfaoui A, Khoutoul M, Doucet H, Asehraou A, Touzani R. In vitro screening, homology modeling and molecular docking studies of some pyrazole and imidazole derivatives. Biomed Pharmacother 2018; 103:653-661. [PMID: 29679907 DOI: 10.1016/j.biopha.2018.04.061] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2018] [Revised: 04/07/2018] [Accepted: 04/09/2018] [Indexed: 10/17/2022] Open
Abstract
A series of synthesized compounds based on pyrazole and imidazole skeletons prepared by palladium catalysts via a one-pot reaction was screened to determine their inhibitory potency against the pathogen fungus Fusarium oxysporum f.sp. albedinis (F.o.a) and four bacteria strains namely Micrococcus luteus, Bacillus subtilis, Staphylococcus aureus and Escherichia coli. The obtained result showed that these compounds exhibit an efficiency antifungal action. Whereas, they showed a very weak antibacterial activity. The structure-activity relationship (SAR) Analysis and lipophilicity study demonstrates the presence of a strong relation between the structure of the ligands and the antifungal activity. On the other hand, a homology modeling and molecular docking study was carried out on the most active compounds against F.o.a fungus, in order to understand and determine the molecular interactions taking place between the ligand and the corresponding receptor of the studied target.
Collapse
Affiliation(s)
- Farid Abrigach
- Laboratory of Applied Chemistry & Environment, Faculty of Science, Mohammed First University, Oujda, Morocco.
| | - Yahya Rokni
- Laboratory of Biochemistry and Biotechnology, Faculty of Sciences, Mohammed First University, BP 717, Oujda, 60000, Morocco
| | - Abdelilah Takfaoui
- Laboratory of Applied Chemistry & Environment, Faculty of Science, Mohammed First University, Oujda, Morocco; Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS-Université de Rennes, "Organométalliques: Matériaux et Catalyse", Campus de Beaulieu, 35042 Rennes, France
| | - Mohamed Khoutoul
- Laboratory of Applied Chemistry & Environment, Faculty of Science, Mohammed First University, Oujda, Morocco
| | - Henri Doucet
- Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS-Université de Rennes, "Organométalliques: Matériaux et Catalyse", Campus de Beaulieu, 35042 Rennes, France
| | - Abdeslam Asehraou
- Laboratory of Biochemistry and Biotechnology, Faculty of Sciences, Mohammed First University, BP 717, Oujda, 60000, Morocco
| | - Rachid Touzani
- Laboratory of Applied Chemistry & Environment, Faculty of Science, Mohammed First University, Oujda, Morocco
| |
Collapse
|
8
|
Hu LQ, Deng RL, Li YF, Zeng CJ, Shen DS, Liu FS. Developing Bis(imino)acenaphthene-Supported N-Heterocyclic Carbene Palladium Precatalysts for Direct Arylation of Azoles. Organometallics 2018. [DOI: 10.1021/acs.organomet.7b00784] [Citation(s) in RCA: 41] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Li-Qun Hu
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| | - Rong-Li Deng
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| | - Yan-Fen Li
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| | - Cui-Jin Zeng
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| | - Dong-Sheng Shen
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| | - Feng-Shou Liu
- School of Chemistry and Chemical Engineering, Guangdong Cosmetics Engineering & Technology Research Center, Guangdong Pharmaceutical University, Zhongshan, Guangdong 528458, China
| |
Collapse
|
9
|
Development of 1-aryl-3-furanyl/thienyl-imidazopyridine templates for inhibitors against hypoxia inducible factor (HIF)-1 transcriptional activity. Bioorg Med Chem Lett 2016; 26:5887-5890. [DOI: 10.1016/j.bmcl.2016.11.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 11/02/2016] [Accepted: 11/04/2016] [Indexed: 01/23/2023]
|
10
|
Badenock JC, Gribble GW. Metal-Catalyzed Coupling with Heterocycles. ADVANCES IN HETEROCYCLIC CHEMISTRY 2016. [DOI: 10.1016/bs.aihch.2016.04.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
|
11
|
Xu X, Zhao L, Li Y, Soulé JF, Doucet H. IntermolecularversusIntramolecular Palladium-Catalyzed Direct Arylations between 1-(2-Bromobenzyl)imidazoles and Aryl Bromides. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500332] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
|
12
|
Grosse S, Pillard C, Massip S, Marchivie M, Jarry C, Bernard P, Guillaumet G. Ligandless Palladium-Catalyzed Regioselective Direct C–H Arylation of Imidazo[1,2-a]imidazole Derivatives. J Org Chem 2015; 80:8539-51. [DOI: 10.1021/acs.joc.5b00534] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Sandrine Grosse
- Institut
de Chimie Organique et Analytique (ICOA), Université d’Orléans, UMR-CNRS 7311, BP 6759, rue de Chartres 45067 Orléans Cedex 2, France
| | | | - Stéphane Massip
- Université de Bordeaux, CNRS - UMS 3033, INSERM US001 -Institut
Européen de Chimie et de Biologie -2 rue Robert Escarpit, 33607 Pessac, France
| | - Mathieu Marchivie
- ICMCB UPR CNRS 9048, Université Bordeaux, 87 Av. Doc. A. Schweitzer, F-33608 Pessac Cedex, France
| | - Christian Jarry
- Université de Bordeaux, CNRS - UMS 3033, INSERM US001 -Institut
Européen de Chimie et de Biologie -2 rue Robert Escarpit, 33607 Pessac, France
| | | | - Gérald Guillaumet
- Institut
de Chimie Organique et Analytique (ICOA), Université d’Orléans, UMR-CNRS 7311, BP 6759, rue de Chartres 45067 Orléans Cedex 2, France
| |
Collapse
|
13
|
Guo X, Shao J, Liu H, Chen B, Chen W, Yu Y. Highly efficient and eco-friendly protocol to functionalized imidazoles via ring-opening of α-nitro epoxides. RSC Adv 2015. [DOI: 10.1039/c5ra07770b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A simple and direct synthesis of functionalized imidazoles from α-nitro-epoxides and amidines was developed.
Collapse
Affiliation(s)
- Xiao Guo
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| | - Jiaan Shao
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| | - Huan Liu
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| | - Binhui Chen
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| | - Wenteng Chen
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| | - Yongping Yu
- Zhejiang Province Key Laboratory of Anti-Cancer Drug Research
- College of Pharmaceutical Science
- Zhejiang University
- Hangzhou 310058
- China
| |
Collapse
|