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Kleinpeter E, Heydenreich M, Shainyan BA. At the Experimental Limit of the NMR Conformational Analysis: 29Si and 13C NMR Study of the Conformational Equilibrium of 1-Phenyl-1- tert-butylsilacyclohexane. Org Lett 2021; 23:405-409. [PMID: 33378211 DOI: 10.1021/acs.orglett.0c03878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The low temperature (95 K) NMR study of 1-Ph-1-t-Bu-silacyclohexane (1) showed the conformational equilibrium to be extremely one-sided toward thePhax,t-Bueq conformer. The barrier to interconversion has been measured (4.2-4.6 kcal/mol) and the conformational equilibrium [Δν = 1990.64 ppm (29Si), 618.9 ppm (13C), 1-Phax:1-Pheq = (95.6-96.6%):(3.4-4.4%), K = 25 ± 3, ΔG° = -RT ln K = 0.58-0.63 kcal/mol] analyzed. The assignment and quantification of the NMR signals is supported by MP2 and DFT calculations.
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Affiliation(s)
- Erich Kleinpeter
- Chemisches Institut der Universität Potsdam, D-14476 Potsdam (Golm), Germany
| | | | - Bagrat A Shainyan
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Irkutsk 664033, Russian Federation
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2
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Phien TD, Kuzmina LE, Arnason I, Jonsdottir NR, Shlykov SA. The conformational behavior and structure of monosubstituted-1,3,5-trisilacyclohexanes: 1-N,N-dimethylamino-1,3,5-trisilacyclohexane. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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3
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1-t-Butyl-1-phenyl-1-silacyclohexane: Synthesis, conformational analysis in gas and solution by GED, FT-IR and theoretical calculations. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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4
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Shainyan BA. Silacyclohexanes, Sila(hetero)cyclohexanes and Related Compounds: Structure and Conformational Analysis. Molecules 2020; 25:molecules25071624. [PMID: 32244789 PMCID: PMC7180822 DOI: 10.3390/molecules25071624] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2020] [Revised: 03/23/2020] [Accepted: 03/25/2020] [Indexed: 12/04/2022] Open
Abstract
Conformational analysis of Si-mono- and Si,Si-disubstituted silacyclohexanes as well as their analogues with a heteroatom(s) in the ring is reviewed with the focus on the recent results. Experimental measurements in the gas phase (gas electron diffraction, GED) and low temperature NMR spectroscopy (LT NMR) on 1H, 13C and 29Si nuclei are described along with theoretical calculations at the DFT and MP2 levels of theory. Structural and conformational specific features are shown to be principally different from those of the carbon predecessors—the corresponding cyclohexanes, oxanes, thianes and piperidines. The role of various effects (steric, hyperconjugation, stereoelectronic, electrostatic) is demonstrated.
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Affiliation(s)
- Bagrat A Shainyan
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of Russian Academy of Science, 1 Favorsky Street, 664033 Irkutsk, Russia
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Shainyan BA, Suslova EN, Phien TD, Shlykov SA, Heydenreich M, Kleinpeter E. 1-Methylthio-1-phenyl-1-silacyclohexane: Synthesis, conformational preferences in gas and solution by GED, NMR and theoretical calculations. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.130677] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Conformational rivalry of geminal substituents in silacyclohexane derivatives: 1-Phenyl vs. 1-OR, R=H or Me. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.04.044] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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7
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Phien TD, Kuzmina LE, Kvaran Á, Jonsdottir S, Arnason I, Shlykov SA. Cyanocyclohexane: Axial-to-equatorial “seesaw” parity in gas and condensed phases. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.05.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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8
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Shainyan BA, Suslova EN, Phien TD, Shlykov SA, Kleinpeter E. Synthesis, conformational preferences in gas and solution, and molecular gear rotation in 1-(dimethylamino)-1-phenyl-1-silacyclohexane by gas phase electron diffraction (GED), LT NMR and theoretical calculations. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.06.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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9
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Synthesis of 3-fluoro-3-methyl-3-silatetrahydropyran and its conformational preferences in gas and solution by GED, NMR and theoretical calculations. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.02.055] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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10
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Shlykov SA, Puchkov BV, Arnason I, Wallevik SÓ, Giricheva NI, Girichev GV, Zhabanov YA. 1-Methoxy-1-silacyclohexane: Synthesis, molecular structure and conformational behavior by gas electron diffraction, Raman spectroscopy and quantum chemical calculations. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.10.088] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Taghartapeh MR, Noroozi Pesyan N, Rashidnejad H, Khavasi HR, Soltani A. Synthesis, spectroscopic and photophysical studies of xanthene derivatives. J Mol Struct 2017. [DOI: 10.1016/j.molstruc.2017.08.054] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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12
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Phien TD, Shlykov SA, Shainyan BA. Molecular structure and conformational behavior of 1-methyl-1-phenylsilacyclohexane studied by gas electron diffraction, IR spectroscopy and quantum chemical calculations. Tetrahedron 2017. [DOI: 10.1016/j.tet.2017.01.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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13
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Shainyan BA, Belyakov AV, Sigolaev YF, Khramov AN, Kleinpeter E. Molecular Structure and Conformational Analysis of 1-Phenyl-1-X-1-Silacyclohexanes (X = F, Cl) by Electron Diffraction, Low-Temperature NMR, and Quantum Chemical Calculations. J Org Chem 2017; 82:461-470. [PMID: 27976896 DOI: 10.1021/acs.joc.6b02538] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The molecular structure and conformational preferences of 1-phenyl-1-X-1-silacyclohexanes C5H10Si(Ph,X) (X = F (3), Cl (4)) were studied by gas-phase electron diffraction, low-temperature NMR spectroscopy, and high-level quantum chemical calculations. In the gas phase only three (3) and two (4) stable conformers differing in the axial or equatorial location of the phenyl group and the angle of rotation about the Si-CPh bond (axi and axo denote the Ph group lying in or out of the X-Si-CPh plane) contribute to the equilibrium. In 3 the ratio Pheq:Phaxo:Phaxi is 40(12):55(24):5 and 64:20:16 by experiment and theory, respectively. In 4 the ratio Pheq:Phaxo is 79(15):21(15) and 71:29 by experiment and theory (M06-2X calculations), respectively. The gas-phase electron diffraction parameters are in good agreement with those obtained from theory at the M06-2X/aug-ccPVTZ and MP2/aug-cc-pVTZ levels. Unlike the case for M06-2X, MP2 calculations indicate that 3-Pheq conformer lies 0.5 kcal/mol higher than the 3-Phaxo conformer. As follows from QTAIM analysis, the phenyl group is more stable when it is located in the axial position but produces destabilization of the silacyclohexane ring. By low-temperature NMR spectroscopy the six-membered-ring interconversion could be frozen at 103 K and the present conformational equilibria of 3 and 4 could be determined. The ratio of the conformers is 3-Pheq:3-Phax = (75-77):(23-25) and 4-Pheq:4-Phax = 82:18.
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Affiliation(s)
- Bagrat A Shainyan
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Science , 1 Favorsky Street, 664033 Irkutsk, Russian Federation
| | | | - Yurii F Sigolaev
- St. Petersburg State Technological Institute , 190013 St. Petersburg, Russia
| | - Alexander N Khramov
- St. Petersburg State Technological Institute , 190013 St. Petersburg, Russia
| | - Erich Kleinpeter
- Chemisches Institut der Universitat Potsdam , Karl-Liebknecht-Straße 24-25, D-14476 Potsdam (Golm), Germany
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Tormena CF. Conformational analysis of small molecules: NMR and quantum mechanics calculations. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2016; 96:73-88. [PMID: 27573182 DOI: 10.1016/j.pnmrs.2016.04.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Revised: 04/14/2016] [Accepted: 04/14/2016] [Indexed: 06/06/2023]
Abstract
This review deals with conformational analysis in small organic molecules, and describes the stereoelectronic interactions responsible for conformational stability. Conformational analysis is usually performed using NMR spectroscopy through measurement of coupling constants at room or low temperature in different solvents to determine the populations of conformers in solution. Quantum mechanical calculations are used to address the interactions responsible for conformer stability. The conformational analysis of a large number of small molecules is described, using coupling constant measurements in different solvents and at low temperature, as well as recent applications of through-space and through-hydrogen bond coupling constants JFH as tools for the conformational analysis of fluorinated molecules. Besides NMR parameters, stereoelectronic interactions such as conjugative, hyperconjugative, steric and intramolecular hydrogen bond interactions involved in conformational preferences are discussed.
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Affiliation(s)
- Cláudio F Tormena
- Institute of Chemistry, University of Campinas, PO Box 6154, 13083-970 Campinas, Sao Paulo, Brazil.
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Shainyan BA. Structure and conformational analysis of silacyclohexanes and 1,3-silaheterocyclohexanes. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.06.079] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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16
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Shainyan BA, Kirpichenko SV, Chipanina NN, Oznobikhina LP, Kleinpeter E, Shlykov SA, Osadchiy DY. Synthesis and Conformational Analysis of 3-Methyl-3-silatetrahydropyran by GED, FTIR, NMR, and Theoretical Calculations: Comparative Analysis of 1-Hetero-3-methyl-3-silacyclohexanes. J Org Chem 2015; 80:12492-500. [PMID: 26587759 DOI: 10.1021/acs.joc.5b02355] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
3-Methyl-3-silatetrahydropyran 1 was synthesized and its molecular structure and conformational behavior was studied by gas-phase electron diffraction (GED), FTIR, low temperature (1)H and (13)C NMR spectroscopy, and by theoretical calculations (DFT, MP2). Two conformers, 1-ax and 1-eq, were located on the potential energy surface. In the gas phase, a slight predominance of the axial conformer was determined, with the ratio 1-ax:1-eq = 54(9):46(9) (from GED) or 53:47 or 61:39 (from IR). In solution, LT NMR spectroscopy at 103 K gives the ratio 1-ax:1-eq = 35:65 (-ΔG°103 = 0.13 kcal/mol). Simulation of solvent effects using the PCM continuum model or by calculation of the corresponding solvent-solute complexes allowed us to rationalize the experimentally observed opposite conformational predominance of the conformers of 3-methyl-3-silatetrahydropyran in the gas phase and in solution. Comparative analysis of the effect of heteroatom in 1-hetero-3-methyl-3-silacyclohexanes on the structure, stereoelectronic interactions, and relative energies of the conformers is done.
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Affiliation(s)
- Bagrat A Shainyan
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences , 1 Favorsky Street, Irkutsk 664033, Russian Federation
| | - Svetlana V Kirpichenko
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences , 1 Favorsky Street, Irkutsk 664033, Russian Federation
| | - Nina N Chipanina
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences , 1 Favorsky Street, Irkutsk 664033, Russian Federation
| | - Larisa P Oznobikhina
- A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Division of the Russian Academy of Sciences , 1 Favorsky Street, Irkutsk 664033, Russian Federation
| | - Erich Kleinpeter
- Chemisches Institut der Universität Potsdam , Karl-Liebknecht-Strasse 24-25, Potsdam (Golm) D-14476, Germany
| | - Sergey A Shlykov
- Ivanovo State University of Chemistry and Technology , Research Institute for Thermodynamics and Kinetics of Chemical Processes, Sheremetev avenue 7, Ivanovo 153000, Russian Federation
| | - Dmitriy Yu Osadchiy
- Ivanovo State University of Chemistry and Technology , Research Institute for Thermodynamics and Kinetics of Chemical Processes, Sheremetev avenue 7, Ivanovo 153000, Russian Federation
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17
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Molecular structure and conformational analysis of 3-methyl-3-silathiane by gas phase electron diffraction, FTIR spectroscopy and quantum chemical calculations. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.08.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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18
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Shainyan BA, Kirpichenko SV, Kleinpeter E. Stereochemistry of 3-isopropoxy-3-methyl-1,3-oxasilinane–the first 3-silatetrahydropyran with an exo-cyclic RO–Si bond. Tetrahedron 2015. [DOI: 10.1016/j.tet.2015.07.047] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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