1
|
Wang Y, Xia Q, Hua X, Guo Y, Shi J, Li YM. Semi-synthesis of biotin-bearing activity-based Ubiquitin probes through sequential enzymatic ligation, N-S acyl transfer and aminolysis reaction. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.108010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
|
2
|
Wang T, Li C, Wang M, Zhang J, Zheng Q, Liang L, Chu G, Tian X, Deng H, He W, Liu L, Li J. Expedient Synthesis of Ubiquitin‐like Protein ISG15 Tools through Chemo‐Enzymatic Ligation Catalyzed by a Viral Protease Lb
pro. Angew Chem Int Ed Engl 2022; 61:e202206205. [DOI: 10.1002/anie.202206205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Indexed: 11/07/2022]
Affiliation(s)
- Tian Wang
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Chuntong Li
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Meijing Wang
- School of Pharmaceutical Sciences Tsinghua University Beijing 100084 P. R. China
| | - Jiachen Zhang
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Qingyun Zheng
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Lujun Liang
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Guochao Chu
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
| | - Xiaolin Tian
- MOE Key Laboratory of Bioinformatics School of Life Sciences Tsinghua University Beijing 100084 P. R. China
| | - Haiteng Deng
- MOE Key Laboratory of Bioinformatics School of Life Sciences Tsinghua University Beijing 100084 P. R. China
| | - Wei He
- School of Pharmaceutical Sciences Tsinghua University Beijing 100084 P. R. China
| | - Lei Liu
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
- Center for BioAnalytical Chemistry Hefei National Laboratory of Physical Science at Microscale University of Science and Technology of China Hefei 230026 P. R. China
| | - Jinghong Li
- Department of Chemistry, Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology Tsinghua University Beijing 100084 P. R. China
- Center for BioAnalytical Chemistry Hefei National Laboratory of Physical Science at Microscale University of Science and Technology of China Hefei 230026 P. R. China
| |
Collapse
|
3
|
Wang T, Li C, Wang M, Zhang J, Zheng Q, Liang L, Chu G, Tian X, Deng H, He W, Liu L, Li J. Expedient Synthesis of Ubiquitin‐like Protein ISG15 Tools Through Chemo‐Enzymatic Ligation Catalyzed by a Viral Protease Lbpro. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206205] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Tian Wang
- Tsinghua University Department of Chemistry CHINA
| | - Chuntong Li
- Tsinghua University Department of Chemistry CHINA
| | - Meijing Wang
- Tsinghua University School of Pharmaceutical Sciences CHINA
| | | | | | - Lujun Liang
- Tsinghua University Department of Chemistry CHINA
| | - Guochao Chu
- Tsinghua University Department of Chemistry CHINA
| | - Xiaolin Tian
- Tsinghua University School of Life Sciences CHINA
| | - Haiteng Deng
- Tsinghua University School of Life Sciences CHINA
| | - Wei He
- Tsinghua University School of Pharmaceutical Sciences CHINA
| | - Lei Liu
- Tsinghua University Chemistry Tsinghua University 100084 Beijing CHINA
| | - Jinghong Li
- Tsinghua University Department of Chemistry CHINA
| |
Collapse
|
4
|
Lu Y, Ji R, Ye Y, Hua X, Fan J, Xu Y, Shi J, Li YM. Efficient semi-synthesis of ubiquitin-fold modifier 1 (UFM1) derivatives. Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2021.153383] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
5
|
|
6
|
Sui X, Li YM. Development of Ubiquitin Tools for Studies of Complex Ubiquitin Processing Protein Machines. CURR ORG CHEM 2020. [DOI: 10.2174/1385272823666191113161511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
:
Ubiquitination is one of the most extensive post-translational modifications in
eukaryotes and is involved in various physiological processes such as protein degradation,
autophagy, protein interaction, and protein localization. The ubiquitin (Ub)-related protein
machines include Ub-activating enzymes (E1s), Ub-conjugating enzymes (E2s), Ub ligases
(E3s), deubiquitinating enzymes (DUBs), p97, and the proteasomes. In recent years,
the role of DUBs has been extensively studied and relatively well understood. On the
other hand, the functional mechanisms of the other more complex ubiquitin-processing
protein machines (e.g., E3, p97, and proteasomes) are still to be sufficiently well explored
due to their intricate nature. One of the hurdles facing the studies of these complex protein
machines is the challenge of developing tailor-designed structurally defined model substrates,
which unfortunately cannot be directly obtained using recombinant technology. Consequently, the acquisition
and synthesis of the ubiquitin tool molecules are essential for the elucidation of the functions and
structures of the complex ubiquitin-processing protein machines. This paper aims to highlight recent studies on
these protein machines based on the synthetic ubiquitin tool molecules.
Collapse
Affiliation(s)
- Xin Sui
- School of Food and Biological Engineering, Hefei University of Technology, Hefei 230009, China
| | - Yi-Ming Li
- School of Food and Biological Engineering, Hefei University of Technology, Hefei 230009, China
| |
Collapse
|
7
|
Fan J, Ye Y, Chu G, Zhang Z, Fu Y, Li YM, Shi J. Semisynthesis of Ubiquitin and SUMO-Rhodamine 110-Glycine through Aminolysis of Boc-Protected Thioester Counterparts. J Org Chem 2019; 84:14861-14867. [PMID: 31642325 DOI: 10.1021/acs.joc.9b01529] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ubiquitin (Ub)-based fluorescent reagents are crucial to explore the activity of deubiquitinases (DUBs). Ub-Rho110-G is one of the preferred tools, whereas the current synthetic route is time-consuming. Here, we report a new semisynthetic strategy to produce Ub-Rho110-G through direct aminolysis of Boc-protected Ub-Mesna using bisglycyl-rhodamine 110. We also applied this strategy to synthesize active SUMO2-Rho110-G for the first time. Biochemical analysis demonstrated that semisynthetic Ub or SUMO-Rho110-G can be effectively used for the detection of the activity of DUBs or SUMO-specific enzymes.
Collapse
Affiliation(s)
- Jian Fan
- Department of Chemistry , University of Science and Technology of China , Hefei 230026 , China
| | - Yinshan Ye
- School of Food and Biological Engineering , Hefei University of Technology , Hefei , Anhui 230009 , China
| | - Guochao Chu
- Department of Chemistry , University of Science and Technology of China , Hefei 230026 , China
| | - Zhongping Zhang
- Institute of Intelligent Machines , Chinese Academy of Sciences , Hefei , Anhui 230031 , China
| | - Yao Fu
- Department of Chemistry , University of Science and Technology of China , Hefei 230026 , China
| | - Yi-Ming Li
- School of Food and Biological Engineering , Hefei University of Technology , Hefei , Anhui 230009 , China
| | - Jing Shi
- Department of Chemistry , University of Science and Technology of China , Hefei 230026 , China
| |
Collapse
|
8
|
Hua X, Bai JS, Kong YF, Chu GC, Shi J, Li YM. Acid-sensitive auxiliary assisted atypical diubiquitin synthesis exploiting thiol-ene coupling. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.151123] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
|
9
|
Tan X, Bai J, Ding S, Ren Y, Hong D, Mei Z, Li YM. Semi-synthesis of Ubiquitin-propargylamide for identifying deubiquitinase targeting inhibitors. CHINESE CHEM LETT 2019. [DOI: 10.1016/j.cclet.2018.09.003] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|