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Scheibelberger L, Stankovic T, Liepert K, Kienzle A, Patronas E, Balber T, Mitterhauser M, Haschemi A, Pallitsch K. Fluorinated Analogues to the Pentuloses of the Pentose Phosphate Pathway. European J Org Chem 2023; 26:e202300339. [PMID: 38505325 PMCID: PMC10946780 DOI: 10.1002/ejoc.202300339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2023] [Revised: 05/12/2023] [Indexed: 03/21/2024]
Abstract
Fluorinated carbohydrates are valuable tools for enzymological studies due to their increased metabolic stability compared to their non-fluorinated analogues. Replacing different hydroxyl groups within the same monosaccharide by fluorine allows to influence a wide range of sugar-receptor interactions and enzymatic transformations. In the past, this principle was frequently used to study the metabolism of highly abundant carbohydrates, while the metabolic fate of rare sugars is still poorly studied. Rare sugars, however, are key intermediates of many metabolic routes, such as the pentose phosphate pathway (PPP). Here we present the design and purely chemical synthesis of a set of three deoxyfluorinated analogues of the rare sugars d-xylulose and d-ribulose: 1-deoxy-1-fluoro-d-ribulose (1DFRu), 3-deoxy-3-fluoro-d-ribulose (3DFRu) and 3-deoxy-3-fluoro-d-xylulose (3DFXu). Together with a designed set of potential late-stage radio-fluorination precursors, they have the potential to become useful tools for studies on the complex equilibria of the non-oxidative PPP.
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Affiliation(s)
- Lukas Scheibelberger
- Institute of Organic ChemistryUniversity of ViennaWähringer Straße 381090ViennaAustria
- Vienna Doctoral School in Chemistry (DoSChem)University of ViennaWähringer Straße 421090ViennaAustria
| | - Toda Stankovic
- Institute of Organic ChemistryUniversity of ViennaWähringer Straße 381090ViennaAustria
| | - Kaja Liepert
- Institute of Organic ChemistryUniversity of ViennaWähringer Straße 381090ViennaAustria
| | - Andreas Kienzle
- Institute of Organic ChemistryUniversity of ViennaWähringer Straße 381090ViennaAustria
| | - Eva‐Maria Patronas
- Division of Nuclear MedicineDepartment of Biomedical Imaging and Image-guided TherapyMedical University of ViennaWähringer Gürtel 18–201090ViennaAustria
| | - Theresa Balber
- Division of Nuclear MedicineDepartment of Biomedical Imaging and Image-guided TherapyMedical University of ViennaWähringer Gürtel 18–201090ViennaAustria
- Ludwig Boltzmann Institute Applied DiagnosticsWähringer Gürtel 18–201090ViennaAustria
| | - Markus Mitterhauser
- Division of Nuclear MedicineDepartment of Biomedical Imaging and Image-guided TherapyMedical University of ViennaWähringer Gürtel 18–201090ViennaAustria
- Ludwig Boltzmann Institute Applied DiagnosticsWähringer Gürtel 18–201090ViennaAustria
- Institute of Inorganic ChemistryUniversity of ViennaWähringer Straße 421090ViennaAustria
| | - Arvand Haschemi
- Department of Laboratory MedicineMedical University of ViennaWähringer Gürtel 18–201090ViennaAustria
| | - Katharina Pallitsch
- Institute of Organic ChemistryUniversity of ViennaWähringer Straße 381090ViennaAustria
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2
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Fernández F, Fernández AG, Balo R, Sánchez-Pedregal VM, Royo M, Soengas RG, Estévez RJ, Estévez JC. Polyhydroxylated Cyclopentane β-Amino Acids Derived from d-Mannose and d-Galactose: Synthesis and Protocol for Incorporation into Peptides. ACS OMEGA 2022; 7:2002-2014. [PMID: 35071888 PMCID: PMC8772316 DOI: 10.1021/acsomega.1c05468] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/01/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
A stereoselective synthesis of polyhydroxylated cyclopentane β-amino acids from hexoses is reported. The reaction sequence comprises, as key steps, ring-closing metathesis of a polysubstituted diene intermediate followed by the stereoselective aza-Michael functionalization of the resulting cyclopent-1-ene-1-carboxylic acid ester. Examples of synthesis of polysubstituted 2-aminocyclopentanecarboxylic acid derivatives starting from protected d-mannose and d-galactose are presented. A general protocol for the incorporation of these highly functionalized alicyclic β-amino acids into peptides is also reported.
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Affiliation(s)
- Fernando Fernández
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CIQUS), Universidade
de Santiago de Compostela, c/Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
| | - Alberto G. Fernández
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CIQUS), Universidade
de Santiago de Compostela, c/Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
| | - Rosalino Balo
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CIQUS), Universidade
de Santiago de Compostela, c/Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
| | - Víctor M. Sánchez-Pedregal
- Departamento
de Química Orgánica, Universidade
de Santiago de Compostela, Avda. das Ciencias s/n, 15782 Santiago de Compostela, Spain
| | - Miriam Royo
- Centro
de Investigación Biomédica en Red Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), c/ Jordi Girona 18-26, 08034 Barcelona, Spain
- Instituto
de Química Avanzada de Cataluña (IQAC-CSIC), c/ Jordi Girona 18-26, 08034 Barcelona, Spain
| | - Raquel G. Soengas
- Departamento
de Química Orgánica e Inorgánica, Universidad de Oviedo, c/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Ramón J. Estévez
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CIQUS), Universidade
de Santiago de Compostela, c/Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
- Departamento
de Química Orgánica, Universidade
de Santiago de Compostela, Avda. das Ciencias s/n, 15782 Santiago de Compostela, Spain
| | - Juan C. Estévez
- Centro
Singular de Investigación en Química Biolóxica
e Materiais Moleculares (CIQUS), Universidade
de Santiago de Compostela, c/Jenaro de la Fuente s/n, 15782 Santiago de Compostela, Spain
- Departamento
de Química Orgánica, Universidade
de Santiago de Compostela, Avda. das Ciencias s/n, 15782 Santiago de Compostela, Spain
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3
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Zheng H, Han Y, Xu FS, Sun J, Yan CG. Selective synthesis of multifunctionalized cyclopent-3-ene-1-carboxamides and 2-oxabicyclo[2.2.1]heptane derivatives. NEW J CHEM 2022. [DOI: 10.1039/d2nj03198a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Triethylamine promoted cycloaddition reaction of phenacylmalononitrile with o-hydroxychalcones or chalcone o-enolates to selectively give cyclopent-3-ene-1-carboxamides and 2-oxabicyclo[2.2.1]heptanes.
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Affiliation(s)
- Hui Zheng
- College of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou 225002, China
| | - Ying Han
- College of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou 225002, China
| | - Feng-Shun Xu
- College of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou 225002, China
| | - Jing Sun
- College of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou 225002, China
| | - Chao-Guo Yan
- College of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou 225002, China
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4
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Soengas R, Lorca M, Pampín B, Sánchez-Pedregal VM, Estévez RJ, Estévez JC. New Morphiceptin Peptidomimetic Incorporating (1 S,2 R,3 S,4 S,5 R)-2-Amino-3,4,5-trihydroxycyclopen-tane-1-carboxylic acid: Synthesis and Structural Study. Molecules 2020; 25:molecules25112574. [PMID: 32492956 PMCID: PMC7321350 DOI: 10.3390/molecules25112574] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 05/28/2020] [Accepted: 05/28/2020] [Indexed: 12/03/2022] Open
Abstract
We present the synthesis and structural study of a new peptidomimetic of morphiceptin, which can formally be considered as the result of the replacement of the central proline residue of this natural analgesic drug with a subunit of (1S,2R,3S,4S,5R)-2-amino-3,4,5-trihydroxycyclopentane-1-carboxylic acid, previously obtained from L-idose. An optimized synthesis of this trihydroxylated cispentacin derivative is also reported. Molecular docking calculations on the target receptor support a favorable role of the hydroxy substituents of the non-natural β-amino acid incorporated into the peptidomimetic.
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Affiliation(s)
- Raquel Soengas
- Departmento de Química Orgánica e Inorgánica, Universidad de Oviedo, Julián Clavería 8, 33006 Oviedo, Spain;
| | - Marcos Lorca
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS), Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain;
| | - Begoña Pampín
- Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (B.P.); (V.M.S.-P.)
| | - Víctor M. Sánchez-Pedregal
- Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (B.P.); (V.M.S.-P.)
| | - Ramón J. Estévez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS), Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain;
- Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (B.P.); (V.M.S.-P.)
- Correspondence: (R.J.E.); (J.C.E.)
| | - Juan C. Estévez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CIQUS), Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain;
- Departamento de Química Orgánica, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain; (B.P.); (V.M.S.-P.)
- Correspondence: (R.J.E.); (J.C.E.)
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5
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Otero JM, Estévez AM, Estévez JC, Fleet GW, Estévez RJ. Highly functionalized cyclic and bicyclic β−amino acids from sugar β−nitroesters. Tetrahedron 2020. [DOI: 10.1016/j.tet.2019.130837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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6
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Affiliation(s)
- Roberto Ballini
- Green Chemistry Group, School of Sciences and Technology; Chemistry Division; University of Camerino; Via S. Agostino n. 1 62032 Camerino (MC) Italy
| | - Alessandro Palmieri
- Green Chemistry Group, School of Sciences and Technology; Chemistry Division; University of Camerino; Via S. Agostino n. 1 62032 Camerino (MC) Italy
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7
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Kiss L, Fülöp F. Synthesis of carbocyclic and heterocyclic β-aminocarboxylic acids. Chem Rev 2013; 114:1116-69. [PMID: 24299148 DOI: 10.1021/cr300454h] [Citation(s) in RCA: 148] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Loránd Kiss
- Institute of Pharmaceutical Chemistry, University of Szeged , H-6720 Szeged, Eötvös utca 6, Hungary
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8
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A compendium of cyclic sugar amino acids and their carbocyclic and heterocyclic nitrogen analogues. Amino Acids 2013; 45:613-89. [DOI: 10.1007/s00726-013-1521-1] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2013] [Accepted: 05/21/2013] [Indexed: 12/19/2022]
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9
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Palmieri A, Gabrielli S, Ballini R. Easy and direct conversion of tosylates and mesylates into nitroalkanes. Beilstein J Org Chem 2013; 9:533-6. [PMID: 23616794 PMCID: PMC3628907 DOI: 10.3762/bjoc.9.58] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2012] [Accepted: 02/19/2013] [Indexed: 12/02/2022] Open
Abstract
Tosylates and mesylates were directly converted into the corresponding nitroalkanes, by their treatment with tetrabutylammonium nitrite (TBAN) under mild conditions.
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Affiliation(s)
- Alessandro Palmieri
- "Green Chemistry Group", School of Science and Technology, Chemistry Division, University of Camerino, Via S. Agostino 1, 62032 Camerino (MC), Italy
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10
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Otero JM, Barcia JC, Salas CO, Thomas P, Estévez JC, Estévez RJ. Studies on the Michael addition of naphthoquinones to sugar nitro olefins: first synthesis of polyhydroxylated hexahydro-11H-benzo[a]carbazole-5,6-diones and hexahydro-11bH-benzo[b]carbazole-6,11-diones. Tetrahedron 2012. [DOI: 10.1016/j.tet.2011.11.072] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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11
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Soengas RG, Estévez AM, Estévez JC, Estévez RJ. An overview on the synthesis of furanoid and pyranoid sugar α- and β-amino acids and related aminocycloalkanecarboxylic acids from carbohydrates. CR CHIM 2011. [DOI: 10.1016/j.crci.2010.11.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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12
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Davis FA, Theddu N. Asymmetric synthesis of cyclic cis-beta-amino acid derivatives using sulfinimines and prochiral Weinreb amide enolates. J Org Chem 2010; 75:3814-20. [PMID: 20462208 DOI: 10.1021/jo100680b] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cyclic cis-beta-amino Weinreb amides, valuable building blocks for the asymmetric synthesis of cyclic beta-amino acids derivatives, are readily prepared via ring-closing metathesis of sulfinimine-derived N-sulfinyl beta-amino diene Weinreb amides. These unsaturated cyclic cis-beta-amino Weinreb amides are valuable building blocks for the asymmetric synthesis of cyclic beta-amino acid derivatives.
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Affiliation(s)
- Franklin A Davis
- Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA.
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13
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Studies on the stereocontrolled transformation of nitrohexofuranoses into 2-oxabicyclo[2.2.1]heptanes. V: Synthesis of enantiopure methyl (1R,2R,4S)-2-amino-4-hydroxycyclopentanecarboxylate. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2009.12.018] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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14
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Fernández F, Estévez JC, Sussman F, Estévez RJ. Stereocontrolled transformation of nitrohexofuranoses into cyclopentylamines via 2-oxabicyclo[2.2.1]heptanes. III: synthesis of enantiopure methyl (1S,2S,3R,4S,5R)-2-amino-3,4,5-trihydroxycyclopentanecarboxylate. ACTA ACUST UNITED AC 2008. [DOI: 10.1016/j.tetasy.2008.12.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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15
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Benedek G, Palkó M, Wéber E, Martinek TA, Forró E, Fülöp F. Efficient Synthesis of Hydroxy-Substituted Cispentacin Derivatives. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800345] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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16
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Mondière A, Peng R, Remuson R, Aitken DJ. Efficient synthesis of 3-hydroxymethylated cis- and trans-cyclobutane β-amino acids using an intramolecular photocycloaddition strategy. Tetrahedron 2008. [DOI: 10.1016/j.tet.2007.11.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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17
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Kirschning A, Kujat C, Luiken S, Schaumann E. Small and Versatile – Formyl Anion and Dianion Equivalents. European J Org Chem 2007. [DOI: 10.1002/ejoc.200601003] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Andreas Kirschning
- Institut für Organische Chemie, Leibniz Universität Hannover, Schneiderberg 1b, 30167 Hannover, Germany, Fax: +49‐511‐726‐3011
| | - Christof Kujat
- Institut für Organische Chemie, Leibniz Universität Hannover, Schneiderberg 1b, 30167 Hannover, Germany, Fax: +49‐511‐726‐3011
| | - Silke Luiken
- Institut für Organische Chemie, Leibniz Universität Hannover, Schneiderberg 1b, 30167 Hannover, Germany, Fax: +49‐511‐726‐3011
| | - Ernst Schaumann
- Institut für Organische Chemie, Clausthal University of Technology, Leibnizstraße 6, 38678 Clausthal‐Zellerfeld, Germany
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18
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Fülöp F, Martinek TA, Tóth GK. Application of alicyclic β-amino acids in peptide chemistry. Chem Soc Rev 2006; 35:323-34. [PMID: 16565749 DOI: 10.1039/b501173f] [Citation(s) in RCA: 234] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The self-organizing beta-peptides have attracted considerable interest in the fields of foldamer chemistry and biochemistry. These compounds exhibit various stable secondary structure motifs that can be exploited to construct biologically active substances and nanostructured tertiary structures. The secondary structures can be controlled via the beta-amino acid sequence, and cyclic beta-amino acid residues play a crucial role in the design. The most important procedures for the preparation of cyclic beta-amino acid monomers and peptides are discussed in this tutorial review. Besides the secondary structure design principles, the methods of folded structure detection are surveyed.
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Affiliation(s)
- Ferenc Fülöp
- Institute of Pharmaceutical Chemistry, University of Szeged, H-6720 Szeged, Eötvös u. 6, Hungary
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