1
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Tedesco F, Calugi L, Lenci E, Trabocchi A. Peptidomimetic Small-Molecule Inhibitors of 3CLPro Activity and Spike-ACE2 Interaction: Toward Dual-Action Molecules against Coronavirus Infections. J Org Chem 2022; 87:12041-12051. [PMID: 36039955 PMCID: PMC9454270 DOI: 10.1021/acs.joc.2c01047] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
The development of molecules able to target protein-protein interactions (PPIs) is of interest for the development of novel therapeutic agents. Since a high percentage of PPIs are mediated by α-helical structure at the interacting surface, peptidomimetics that reproduce the essential conformational components of helices are useful templates for the development of PPIs inhibitors. In this work, the synthesis of a constrained dipeptide isostere and insertion in the short peptide epitope EDLFYQ of the angiotensin-converting enzyme 2 (ACE2) α1 helix domain resulted in the identification of a molecule capable of inhibiting the SARS-CoV-2 ACE2/spike interaction in the micromolar range. Moreover, inhibition of SARS-CoV-2 3CLPro main protease activity was assessed as an additional inhibitory property of the synthesized peptidomimetics, taking advantage of the C-terminal Q amino acid present in both the ACE2 epitope and the Mpro recognizing motif (APSTVxLQ), thus paving the way to the development of multitarget therapeutics toward coronavirus infections.
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Affiliation(s)
- Filomena Tedesco
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 13, Sesto Fiorentino, 50019 Florence, Italy
| | - Lorenzo Calugi
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 13, Sesto Fiorentino, 50019 Florence, Italy
| | - Elena Lenci
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 13, Sesto Fiorentino, 50019 Florence, Italy
| | - Andrea Trabocchi
- Department of Chemistry "Ugo Schiff", University of Florence, via della Lastruccia 13, Sesto Fiorentino, 50019 Florence, Italy
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2
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Feng GS, Zhao ZB, Shi L, Zhou YG. Synthesis of chiral piperazin-2-ones through palladium-catalyzed asymmetric hydrogenation of pyrazin-2-ols. Org Chem Front 2021. [DOI: 10.1039/d1qo01144h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A palladium-catalyzed asymmetric hydrogenation of pyrazines containing a tautomeric hydroxyl group was developed, providing a facile access to chiral disubstituted piperazin-2-ones with excellent diastereoselectivities and enantioselectivities.
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Affiliation(s)
- Guang-Shou Feng
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Zi-Biao Zhao
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
| | - Lei Shi
- School of Chemical Engineering, Dalian University of Technology, Dalian 116024, P. R. China
| | - Yong-Gui Zhou
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, P. R. China
- Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
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3
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Grab HA, Kirsch VC, Sieber SA, Bach T. Total Synthesis of the Cyclic Depsipeptide Vioprolide D via its (Z)-Diastereoisomer. Angew Chem Int Ed Engl 2020; 59:12357-12361. [PMID: 32126146 PMCID: PMC7383572 DOI: 10.1002/anie.202002328] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Indexed: 12/15/2022]
Abstract
The first total synthesis of vioprolide D was accomplished in an overall yield of 2.0 % starting from methyl (2S)-3-benzyloxy-2-hydroxypropanoate (16 steps in the longest linear sequence). The cyclic depsipeptide was assembled from two building blocks of similar size and complexity in a modular, highly convergent approach. Peptide bond formation at the C-terminal dehydrobutyrine amino acid of the northern fragment was possible via its (Z)-diastereoisomer. After macrolactamization and formation of the thiazoline ring, the (Z)-double bond of the dehydrobutyrine unit was isomerized to the (E)-double bond of the natural product. The cytotoxicity of vioprolide D is significantly higher than that of its (Z)-diastereoisomer.
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Affiliation(s)
- Hanusch A. Grab
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Volker C. Kirsch
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Stephan A. Sieber
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
| | - Thorsten Bach
- Department ChemieTechnische Universität MünchenLichtenbergstrasse 485747GarchingGermany
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4
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Grab HA, Kirsch VC, Sieber SA, Bach T. Totalsynthese des cyclischen Depsipeptids Vioprolid D über sein (
Z
)‐Diastereomer. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202002328] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Hanusch A. Grab
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Volker C. Kirsch
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Stephan A. Sieber
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
| | - Thorsten Bach
- Department Chemie Technische Universität München Lichtenbergstrasse 4 85747 Garching Deutschland
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5
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Poupart J, Hou X, Chemtob S, Lubell WD. Application of N-Dodecyl l-Peptide to Enhance Serum Stability while Maintaining Inhibitory Effects on Myometrial Contractions Ex Vivo. Molecules 2019; 24:molecules24224141. [PMID: 31731725 PMCID: PMC6891598 DOI: 10.3390/molecules24224141] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Revised: 11/01/2019] [Accepted: 11/07/2019] [Indexed: 11/16/2022] Open
Abstract
N-Alkylation and N-acylation of the prostaglandin-F2α allosteric modulator l-PDC31 were performed to install various alkyl, PEG and isoprenoid groups onto the l-enantiomer of the peptide. Among the different bio-conjugates studied, the N-dodecyl analog reduced prostaglandin-F2α-induced mouse myometrium contractions ex vivo. Furthermore, N-dodecyl-l-PDC31 exhibited improved stability in a mouse serum assay, likely due to protection from protease degradation by the lipid chain.
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Affiliation(s)
- Julien Poupart
- Département de Chimie, Pavillon Roger Gaudry, Université de Montréal, CP 6128 and Succursale Centre-ville, Montréal, QC H3C 3J7, Canada;
| | - Xin Hou
- Centre de recherches du Centre Hospitalier Universitaire Sainte-Justine, Montréal City, QC H3T 1C5, Canada; (X.H.); (S.C.)
| | - Sylvain Chemtob
- Centre de recherches du Centre Hospitalier Universitaire Sainte-Justine, Montréal City, QC H3T 1C5, Canada; (X.H.); (S.C.)
| | - William D. Lubell
- Département de Chimie, Pavillon Roger Gaudry, Université de Montréal, CP 6128 and Succursale Centre-ville, Montréal, QC H3C 3J7, Canada;
- Correspondence: ; Tel.: +1-514-343-7339
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6
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Jida M, Ballet S. Efficient one-pot synthesis of enantiomerically pure N-protected-α-substituted piperazines from readily available α-amino acids. NEW J CHEM 2018. [DOI: 10.1039/c7nj04039c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new pathway towards enantiomerically pure 3-substituted piperazines, bearing a benzyl protecting group, has been developed in good overall yields (83–92%), starting from commercially available N-protected amino acids.
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Affiliation(s)
- Mouhamad Jida
- Research Group of Organic Chemistry
- Departments of Chemistry and Bioengineering Sciences
- Vrije Universiteit Brussel
- Brussels
- Belgium
| | - Steven Ballet
- Research Group of Organic Chemistry
- Departments of Chemistry and Bioengineering Sciences
- Vrije Universiteit Brussel
- Brussels
- Belgium
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7
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Wang Y, Liu Y, Li K, Yang G, Zhang W. Iridium-Catalyzed Asymmetric Hydrogenation of Unsaturated Piperazin-2-ones. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201700175] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yanzhao Wang
- School of Chemistry and Chemical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Road Shanghai 200240 People's Republic of China
| | - Yuanyuan Liu
- School of Chemistry and Chemical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Road Shanghai 200240 People's Republic of China
| | - Kun Li
- School of Chemistry and Chemical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Road Shanghai 200240 People's Republic of China
| | - Guoqiang Yang
- School of Chemistry and Chemical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Road Shanghai 200240 People's Republic of China
| | - Wanbin Zhang
- School of Chemistry and Chemical Engineering; Shanghai Jiao Tong University; 800 Dongchuan Road Shanghai 200240 People's Republic of China
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8
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New multicomponent method for the synthesis of polyhydrogenated pyrazino[1,2-a]quinolines. Chem Heterocycl Compd (N Y) 2016. [DOI: 10.1007/s10593-016-1876-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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9
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Cézard C, Bouvier B, Dassonville-Klimpt A, Sonnet P. The origin of the stereoselective alkylation of 3-substituted-2-oxopiperazines: A computational investigation. COMPUT THEOR CHEM 2016. [DOI: 10.1016/j.comptc.2015.12.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Korch KM, Eidamshaus C, Behenna DC, Nam S, Horne D, Stoltz BM. Enantioselective synthesis of α-secondary and α-tertiary piperazin-2-ones and piperazines by catalytic asymmetric allylic alkylation. Angew Chem Int Ed Engl 2015; 54:179-83. [PMID: 25382664 PMCID: PMC4285707 DOI: 10.1002/anie.201408609] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2014] [Indexed: 11/07/2022]
Abstract
The asymmetric palladium-catalyzed decarboxylative allylic alkylation of differentially N-protected piperazin-2-ones allows the synthesis of a variety of highly enantioenriched tertiary piperazine-2-ones. Deprotection and reduction affords the corresponding tertiary piperazines, which can be employed for the synthesis of medicinally important analogues. The introduction of these chiral tertiary piperazines resulted in imatinib analogues which exhibited comparable antiproliferative activity to that of their corresponding imatinib counterparts.
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Affiliation(s)
- Katerina M. Korch
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology 1200 E. California Blvd, MC 101-20, Pasadena, CA 91125 (USA)
| | - Christian Eidamshaus
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology 1200 E. California Blvd, MC 101-20, Pasadena, CA 91125 (USA)
| | - Douglas C. Behenna
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology 1200 E. California Blvd, MC 101-20, Pasadena, CA 91125 (USA)
| | - Sangkil Nam
- Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center 1500 East Duarte Road, Duarte, CA 91010 (USA)
| | - David Horne
- Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center 1500 East Duarte Road, Duarte, CA 91010 (USA)
| | - Brian M. Stoltz
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology 1200 E. California Blvd, MC 101-20, Pasadena, CA 91125 (USA)
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11
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Perryman MS, Earl MWM, Greatorex S, Clarkson GJ, Fox DJ. Synthesis of 1- and 4-substituted piperazin-2-ones via Jocic-type reactions with N-substituted diamines. Org Biomol Chem 2015; 13:2360-5. [DOI: 10.1039/c4ob02311k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Enantiomerically-enriched trichloromethyl-containing alcohols are transformed regioselectively into enantiomerically-enriched 1-substituted piperazinones by modified Jocic reactions.
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Affiliation(s)
| | | | - Sam Greatorex
- Department of Chemistry
- University of Warwick
- Coventry
- U.K
| | | | - David J. Fox
- Department of Chemistry
- University of Warwick
- Coventry
- U.K
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12
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Korch KM, Eidamshaus C, Behenna DC, Nam S, Horne D, Stoltz BM. Enantioselective Synthesis of α‐Secondary and α‐Tertiary Piperazin‐2‐ones and Piperazines by Catalytic Asymmetric Allylic Alkylation. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201408609] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Katerina M. Korch
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, MC 101‐20, Pasadena, CA 91125 (USA)
| | - Christian Eidamshaus
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, MC 101‐20, Pasadena, CA 91125 (USA)
| | - Douglas C. Behenna
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, MC 101‐20, Pasadena, CA 91125 (USA)
| | - Sangkil Nam
- Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1500 East Duarte Road, Duarte, CA 91010 (USA)
| | - David Horne
- Molecular Medicine, Beckman Research Institute, City of Hope Comprehensive Cancer Center, 1500 East Duarte Road, Duarte, CA 91010 (USA)
| | - Brian M. Stoltz
- The Warren and Katharine Schlinger Laboratory for Chemistry and Chemical Engineering, Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 E. California Blvd, MC 101‐20, Pasadena, CA 91125 (USA)
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13
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M. Beauchemin A, Das Neves N, Raymond M. Expedient Synthesis of 2-Oxopiperazines Using a SN2 / Cope-Type Hydroamination Sequence. HETEROCYCLES 2014. [DOI: 10.3987/com-13-s(s)18] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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14
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Manna SK, Panda G. An efficient synthetic approach for N–C bond formation from (S)-amino acids: an easy access to cis-2,5-disubstituted chiral piperazines. RSC Adv 2013. [DOI: 10.1039/c3ra42309c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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15
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Martin CE, Broecker F, Eller S, Oberli MA, Anish C, Pereira CL, Seeberger PH. Glycan arrays containing synthetic Clostridium difficile lipoteichoic acid oligomers as tools toward a carbohydrate vaccine. Chem Commun (Camb) 2013; 49:7159-61. [DOI: 10.1039/c3cc43545h] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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An efficient entry to highly substituted chiral 2-oxopiperazines from α-amino acids via iodocyclization. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.09.109] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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17
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Samanta K, Panda G. Regioselective ring-opening of amino acid-derived chiral aziridines: an easy access to cis-2,5-disubstituted chiral piperazines. Chem Asian J 2011; 6:189-97. [PMID: 21077094 DOI: 10.1002/asia.201000554] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
An efficient four-step synthetic strategy for cis-2,5-disubstituted chiral piperazines derived from amino-acid-based aziridines is described. The key steps in this strategy are the highly regioselective boron trifluoride diethyl etherate (BF(3)·OEt(2))-mediated ring-opening of less-reactive N-Ts chiral aziridines by α-amino acid methyl ester hydrochloride followed by Mitsunobu cyclization. This protocol has been used in an attempt to construct the piperazine core framework of natural product (+)-piperazinomycin.
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Affiliation(s)
- Krishnananda Samanta
- Division of Medicinal and Process Chemistry, Central Drug Research Institute, Lucknow-226001, UP, India
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18
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Kopp F, Komatsu T, Nomura DK, Trauger SA, Thomas JR, Siuzdak G, Simon GM, Cravatt BF. The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice. ACTA ACUST UNITED AC 2011; 17:831-40. [PMID: 20797612 DOI: 10.1016/j.chembiol.2010.06.009] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2010] [Revised: 06/04/2010] [Accepted: 06/07/2010] [Indexed: 12/25/2022]
Abstract
GDE1 is a mammalian glycerophosphodiesterase (GDE) implicated by in vitro studies in the regulation of glycerophophoinositol (GroPIns) and possibly other glycerophospho (GroP) metabolites. Here, we show using untargeted metabolomics that GroPIns is profoundly (>20-fold) elevated in brain tissue from GDE1(-/-) mice. Furthermore, two additional GroP metabolites not previously identified in eukaryotic cells, glycerophosphoserine (GroPSer) and glycerophosphoglycerate (GroPGate), were also highly elevated in GDE1(-/-) brains. Enzyme assays with synthetic GroP metabolites confirmed that GroPSer and GroPGate are direct substrates of GDE1. Interestingly, our metabolomic profiles also revealed that serine (both L-and D-) levels were significantly reduced in brains of GDE1(-/-) mice. These findings designate GroPSer as a previously unappreciated reservoir for free serine in the nervous system and suggest that GDE1, through recycling serine from GroPSer, may impact D-serine-dependent neural signaling processes in vivo.
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Affiliation(s)
- Florian Kopp
- Department of Chemical Physiology and The Skaggs Institute for Chemical Biology, La Jolla, CA 92037, USA
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19
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Walker DP, Strohbach JW, McGlynn MA, Lu HF. A practical and stereoselective synthesis of (+/−)-trans-4-benzyloctahydropyrrolo[3,4-b][1,4]oxazine. J Heterocycl Chem 2010. [DOI: 10.1002/jhet.476] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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20
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De Risi C, Pelà M, Pollini GP, Trapella C, Zanirato V. Mastering chiral substituted 2-oxopiperazines. ACTA ACUST UNITED AC 2010. [DOI: 10.1016/j.tetasy.2010.02.008] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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21
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Crestey F, Witt M, Jaroszewski JW, Franzyk H. Expedite Protocol for Construction of Chiral Regioselectively N-Protected Monosubstituted Piperazine, 1,4-Diazepane, and 1,4-Diazocane Building Blocks. J Org Chem 2009; 74:5652-5. [DOI: 10.1021/jo900441s] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Affiliation(s)
- François Crestey
- Department of Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Matthias Witt
- Bruker Daltonik GmbH, Fahrenheitstrasse 4, D-28359 Bremen, Germany
| | - Jerzy W. Jaroszewski
- Department of Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
| | - Henrik Franzyk
- Department of Medicinal Chemistry, Faculty of Pharmaceutical Sciences, University of Copenhagen, Universitetsparken 2, DK-2100 Copenhagen, Denmark
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