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Magalhães CM, Pereira RB, Erbiai EH, González-Berdullas P, da Silva JCGE, Pereira DM, da Silva LP. Comparative investigation into the anticancer activity of analogs of marine coelenterazine and coelenteramine. Bioorg Chem 2024; 144:107083. [PMID: 38219477 DOI: 10.1016/j.bioorg.2023.107083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 12/21/2023] [Accepted: 12/29/2023] [Indexed: 01/16/2024]
Abstract
Cancer is still one of the most challenging diseases to treat, making the pursuit for novel molecules with potential anticancer activity an important research topic. Herein, we have performed a comparative investigation into the anticancer activity of analogs of marine coelenterazine and coelenteramine. The former is a well-known bioluminescent substrate, while the latter is a metabolic product of the resulting bioluminescent reaction. While both types of analogs showed anticancer activity toward lung and gastric cancer cell lines, we have obtained data that highlight relevant differences between the activity of these two types of compounds. More specifically, we observed relevant differences in structure-activity relationships between these types of compounds. Also, coelenteramine analogs showed time-dependent activity, while coelenterazine-based compounds usually present time-independent activity. Coelenterazine analogs also appear to be relatively safer toward noncancer cells than coelenteramine analogs. There was also seen a correlation between the activity of the coelenterazine-based compounds and their light-emission properties. Thus, these results further indicate the potential of the marine coelenterazine chemi-/bioluminescent system as a source of new molecules with anticancer activity, while providing more insight into their modes of action.
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Affiliation(s)
- Carla M Magalhães
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
| | - Renato B Pereira
- REQUIMTE/LAQV, Laboratory of Pharmacognosy, Department of Chemistry, Faculty of Pharmacy, University of Porto, R. Jorge Viterbo Ferreira, 228, 4050-313 Porto, Portugal
| | - El Hadi Erbiai
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
| | - Patricia González-Berdullas
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
| | - Joaquim C G Esteves da Silva
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; LACOMEPHI, GreenUPorto, Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
| | - David M Pereira
- REQUIMTE/LAQV, Laboratory of Pharmacognosy, Department of Chemistry, Faculty of Pharmacy, University of Porto, R. Jorge Viterbo Ferreira, 228, 4050-313 Porto, Portugal
| | - Luís Pinto da Silva
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; LACOMEPHI, GreenUPorto, Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal.
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2
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Liu YJ. Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2022. [DOI: 10.1016/j.jphotochemrev.2022.100537] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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3
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Sousa J, Magalhães CM, González-Berdullas P, Esteves da Silva JCG, Pinto da Silva L. Comparative Investigation of the Chemiluminescent Properties of a Dibrominated Coelenterazine Analog. Int J Mol Sci 2022; 23:ijms23158490. [PMID: 35955625 PMCID: PMC9369366 DOI: 10.3390/ijms23158490] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Revised: 07/22/2022] [Accepted: 07/26/2022] [Indexed: 11/25/2022] Open
Abstract
Chemi- and bioluminescence are remarkable light-emitting phenomena, in which thermal energy is converted into excitation energy due to a (bio)chemical reaction. Among a wide variety of chemi-/bioluminescent systems, one of the most well-known and studied systems is that of marine imidazopyrazinones, such as Coelenterazine and Cypridina luciferin. Due to the increasing usefulness of their chemi-/bioluminescent reactions in terms of imaging and sensing applications, among others, significant effort has been made over the years by researchers to develop new derivatives with enhanced properties. Herein, we report the synthesis and chemiluminescent characterization of a novel dibrominated Coelenterazine analog. This novel compound consistently showed superior luminescence, in terms of total light output and emission lifetime, to natural imidazopyrazinones and commercially available analogs in aprotic media, while being capable of yellow light emission. Finally, this new compound showed enhanced chemiluminescence in an aqueous solution when triggered by superoxide anion, showing potential to be used as a basis for optimized probes for reactive oxygen species. In conclusion, bromination of the imidazopyrazinone scaffold appears to be a suitable strategy for obtaining Coelenterazines with enhanced properties.
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Affiliation(s)
- João Sousa
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; (J.S.); (C.M.M.); (P.G.-B.); (J.C.G.E.d.S.)
| | - Carla M. Magalhães
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; (J.S.); (C.M.M.); (P.G.-B.); (J.C.G.E.d.S.)
| | - Patricia González-Berdullas
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; (J.S.); (C.M.M.); (P.G.-B.); (J.C.G.E.d.S.)
| | - Joaquim C. G. Esteves da Silva
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; (J.S.); (C.M.M.); (P.G.-B.); (J.C.G.E.d.S.)
- LACOMEPHI, GreenUPorto, Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
| | - Luís Pinto da Silva
- Centro de Investigação em Química (CIQUP), Instituto de Ciências Moleculares (IMS), Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal; (J.S.); (C.M.M.); (P.G.-B.); (J.C.G.E.d.S.)
- LACOMEPHI, GreenUPorto, Departamento de Geociências, Ambiente e Ordenamento do Território, Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre s/n, 4169-007 Porto, Portugal
- Correspondence:
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4
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Magalhães C, Esteves da Silva JCG, Pinto da Silva L. Theoretical Study of the Thermolysis Reaction and Chemiexcitation of Coelenterazine Dioxetanes. J Phys Chem A 2022; 126:3486-3494. [PMID: 35612291 PMCID: PMC9776548 DOI: 10.1021/acs.jpca.2c01835] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Coelenterazine and other imidazopyrazinones are important bioluminescent substrates widespread in marine species and can be found in eight phyla of luminescent organisms. Light emission from these systems is caused by the formation and subsequent thermolysis of a dioxetanone intermediate, whose decomposition allows for efficient chemiexcitation to singlet excited states. Interestingly, some studies have also reported the involvement of unexpected dioxetane intermediates in the chemi- and bioluminescent reactions of Coelenterazine, albeit with little information on the underlying mechanisms of these new species. Herein, we have employed a theoretical approach based on density functional theory to study for the first time the thermolysis reaction and chemiexcitation profile of two Coelenterazine dioxetanes. We have found that the thermolysis reactions of these species are feasible but with relevant energetic differences. More importantly, we found that the singlet chemiexcitation profiles of these dioxetanes are significantly less efficient than the corresponding dioxetanones. Furthermore, we identified triplet chemiexcitation pathways for the Coelenterazine dioxetanes. Given this, the chemiexcitation of these dioxetanes should lead only to minimal luminescence. Thus, our theoretical investigation of these systems indicates that the thermolysis of these dioxetanes should only provide "dark" pathways for the formation of nonluminescent degradation products of the chemi- and bioluminescent reactions of Coelenterazine and other imidazopyrazinones.
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Affiliation(s)
- Carla
M. Magalhães
- Chemistry
Research Unit (CIQUP), Institute of Molecular Sciences (IMS), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 687, 4169-007 Porto, Portugal
| | - Joaquim C. G. Esteves da Silva
- Chemistry
Research Unit (CIQUP), Institute of Molecular Sciences (IMS), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 687, 4169-007 Porto, Portugal,LACOMEPHI,
GreenUPorto, Department of Geosciences, Environment and Territorial
Planning, Faculty of Sciences of University
of Porto (FCUP), Rua
do Campo Alegre 687, 4169-007 Porto, Portugal
| | - Luís Pinto da Silva
- Chemistry
Research Unit (CIQUP), Institute of Molecular Sciences (IMS), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 687, 4169-007 Porto, Portugal,LACOMEPHI,
GreenUPorto, Department of Geosciences, Environment and Territorial
Planning, Faculty of Sciences of University
of Porto (FCUP), Rua
do Campo Alegre 687, 4169-007 Porto, Portugal,
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5
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Development of a Coelenterazine Derivative with Enhanced Superoxide Anion-Triggered Chemiluminescence in Aqueous Solution. CHEMOSENSORS 2022. [DOI: 10.3390/chemosensors10050174] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
Superoxide anion is a reactive oxygen species (ROS) of biological interest. More specifically, it plays a role in intra- and intercellular signaling, besides being associated with conditions such as inflammation and cancer. Given this, efforts have been made by the research community to devise new sensing strategies for this ROS species. Among them, the chemiluminescent reaction of marine Coelenterazine has been employed as a sensitive and dynamic probing approach. Nevertheless, chemiluminescent reactions are typically associated with lower emissions in aqueous solutions. Herein, here we report the synthesis of a new Coelenterazine derivative with the potential for superoxide anion sensing. Namely, this novel compound is capable of chemiluminescence in a dose-dependent manner when triggered by this ROS species. More importantly, the light-emission intensities provided by this derivative were relevantly enhanced (intensities 2.13 × 101 to 1.11 × 104 times higher) in aqueous solutions at different pH conditions when compared to native Coelenterazine. The half-life of the chemiluminescent signal is also greatly increased for the derivative. Thus, a new chemiluminescence molecule with significant potential for superoxide anion sensing was discovered and reported for the first time.
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6
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Rationalizing the Role of Electron/Charge Transfer in the Intramolecular Chemiexcitation of Dioxetanone-Based Chemi-/Bioluminescent Systems. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.113904] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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7
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Gagnot G, Hervin V, Coutant EP, Goyard S, Jacob Y, Rose T, Hibti FE, Quatela A, Janin YL. Core-Modified Coelenterazine Luciferin Analogues: Synthesis and Chemiluminescence Properties. Chemistry 2021; 27:2112-2123. [PMID: 33137225 DOI: 10.1002/chem.202004311] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Revised: 10/26/2020] [Indexed: 11/10/2022]
Abstract
In this work on the design and studies of luciferins related to the blue-hued coelenterazine, the synthesis of heterocyclic analogues susceptible to produce a photon, possibly at a different wavelength, is undertaken. Here, the synthesis of O-acetylated derivatives of imidazo[1,2-b]pyridazin-3(5 H)-one, imidazo[2,1-f][1,2,4]triazin-7(1 H)-one, imidazo[1,2-a]pyridin-3-ol, imidazo[1,2-a]quinoxalin-1(5 H)-one, benzo[f]imidazo[1,2-a]quinoxalin-3(11 H)-one, imidazo[1',2':1,6]pyrazino[2,3-c]quinolin-3(11 H)-one, and 5,11-dihydro-3 H-chromeno[4,3-e]imidazo[1,2-a]pyrazin-3-one is described thanks to extensive use of the Buchwald-Hartwig N-arylation reaction. The acidic hydrolysis of these derivatives then gave solutions of the corresponding luciferin analogues, which were studied. Not too unexpectedly, even if these were "dressed" with substituents found in actual substrates of the nanoKAZ/NanoLuc luciferase, no bioluminescence was observed with these compounds. However, in a phosphate buffer, all produced a light signal, by chemiluminescence, with extensive variations in their respective intensity and this could be increased by adding a quaternary ammonium salt in the buffer. This aspect was actually instrumental to determine the emission spectra of many of these luciferin analogues.
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Affiliation(s)
- Glwadys Gagnot
- Institut Pasteur, UMR 3523, CNRS, Unité de Chimie et Biocatalyse, 28 rue du Dr. Roux, 75724, Paris Cedex 15, France.,Université de Paris, 12 rue de l'école de Médecine, 75006, Paris, France
| | - Vincent Hervin
- Institut Pasteur, UMR 3523, CNRS, Unité de Chimie et Biocatalyse, 28 rue du Dr. Roux, 75724, Paris Cedex 15, France
| | - Eloi P Coutant
- Institut Pasteur, UMR 3523, CNRS, Unité de Chimie et Biocatalyse, 28 rue du Dr. Roux, 75724, Paris Cedex 15, France
| | - Sophie Goyard
- Center for Innovation and Technological Research, Institut Pasteur, 25 rue du Dr. Roux, 75724, Paris Cedex 15, France
| | - Yves Jacob
- Unité de Génétique Moléculaire des Virus à ARN, Institut Pasteur, UMR 3569, CNRS, 28 rue du Dr. Roux, 75724, Paris Cedex 15, France
| | - Thierry Rose
- Center for Innovation and Technological Research, Institut Pasteur, 25 rue du Dr. Roux, 75724, Paris Cedex 15, France
| | - Fatima Ezzahra Hibti
- HORIBA FRANCE SAS, 14 Boulevard Thomas Gobert, Passage Jobin Yvon CS45002, 91120, Palaiseau, France
| | - Alessia Quatela
- HORIBA FRANCE SAS, 14 Boulevard Thomas Gobert, Passage Jobin Yvon CS45002, 91120, Palaiseau, France
| | - Yves L Janin
- Institut Pasteur, UMR 3523, CNRS, Unité de Chimie et Biocatalyse, 28 rue du Dr. Roux, 75724, Paris Cedex 15, France
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8
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Magalhães CM, González-Berdullas P, Esteves da Silva JCG, Pinto da Silva L. Elucidating the chemiexcitation of dioxetanones by replacing the peroxide bond with S–S, N–N and C–C bonds. NEW J CHEM 2021. [DOI: 10.1039/d1nj03440e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Replacing the peroxide bond of dioxetanone prevents chemiluminescence by making its thermolysis energetically unfavorable and without a singlet chemiexcitation pathway.
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Affiliation(s)
- Carla M. Magalhães
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
| | - Patricia González-Berdullas
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
| | - Joaquim C. G. Esteves da Silva
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
- LACOMEPHI, GreenUPorto, Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
| | - Luís Pinto da Silva
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
- LACOMEPHI, GreenUPorto, Faculty of Sciences of University of Porto (FCUP), Rua do Campo Alegre 697, 4169-007, Porto, Portugal
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9
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Kanie S, Komatsu M, Mitani Y. Luminescence of Cypridina Luciferin in the Presence of Human Plasma Alpha 1-Acid Glycoprotein. Int J Mol Sci 2020; 21:ijms21207516. [PMID: 33053850 PMCID: PMC7588914 DOI: 10.3390/ijms21207516] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Revised: 09/25/2020] [Accepted: 10/10/2020] [Indexed: 11/16/2022] Open
Abstract
The enzyme Cypridina luciferase (CLase) enables Cypridina luciferin to emit light efficiently through an oxidation reaction. The catalytic mechanism on the substrate of CLase has been studied, but the details remain to be clarified. Here, we examined the luminescence of Cypridina luciferin in the presence of several proteins with drug-binding ability. Luminescence measurements showed that the mixture of human plasma alpha 1-acid glycoprotein (hAGP) and Cypridina luciferin produced light. The total value of the luminescence intensity over 60 s was over 12.6-fold higher than those in the presence of ovalbumin, human serum albumin, or bovine serum albumin. In the presence of heat-treated hAGP, the luminescence intensity of Cypridina luciferin was lower than in the presence of intact hAGP. Chlorpromazine, which binds to hAGP, showed an inhibitory effect on the luminescence of Cypridina luciferin, both in the presence of hAGP and a recombinant CLase. Furthermore, BlastP analysis showed that hAGP had partial amino acid sequence similarity to known CLases in the region including amino acid residues involved in the drug-binding ability of hAGP. These findings indicate enzymological similarity between hAGP and CLase and provide insights into both the enzymological understanding of CLase and development of a luminescence detection method for hAGP.
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Affiliation(s)
- Shusei Kanie
- Correspondence: (S.K.); (Y.M.); Tel.: +81-11-857-8410 (S.K.)
| | | | - Yasuo Mitani
- Correspondence: (S.K.); (Y.M.); Tel.: +81-11-857-8410 (S.K.)
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10
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Schramm S, Al‐Handawi MB, Karothu DP, Kurlevskaya A, Commins P, Mitani Y, Wu C, Ohmiya Y, Naumov P. Mechanically Assisted Bioluminescence with Natural Luciferase. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007440] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Stefan Schramm
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
| | | | | | | | - Patrick Commins
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
| | - Yasuo Mitani
- Bioproduction Research InstituteNational Institute of Advanced Industrial Science and Technology (AIST) 2-17-2-1 Tsukisamu-higashi, Toyohira-ku Sapporo 062-8517 Japan
| | - Chun Wu
- Biomedical Research InstituteNational Institute of Advanced Industrial Science and Technology (AIST) 1-8-31 Midorigaoka Ikeda 563-8577 Japan
| | - Yoshihiro Ohmiya
- DAILAB, Biomedical Research InstituteNational Institute of Advanced Industrial Science and Technology (AIST) 1-8-31 Midorigaoka Ikeda 563-8577 Japan
| | - Panče Naumov
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
- Radcliffe Institute for Advanced StudyHarvard University 10 Garden St Cambridge MA 02138 USA
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11
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Schramm S, Al‐Handawi MB, Karothu DP, Kurlevskaya A, Commins P, Mitani Y, Wu C, Ohmiya Y, Naumov P. Mechanically Assisted Bioluminescence with Natural Luciferase. Angew Chem Int Ed Engl 2020; 59:16485-16489. [DOI: 10.1002/anie.202007440] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2020] [Indexed: 01/02/2023]
Affiliation(s)
- Stefan Schramm
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
| | | | | | | | - Patrick Commins
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
| | - Yasuo Mitani
- Bioproduction Research Institute National Institute of Advanced Industrial Science and Technology (AIST) 2-17-2-1 Tsukisamu-higashi, Toyohira-ku Sapporo 062-8517 Japan
| | - Chun Wu
- Biomedical Research Institute National Institute of Advanced Industrial Science and Technology (AIST) 1-8-31 Midorigaoka Ikeda 563-8577 Japan
| | - Yoshihiro Ohmiya
- DAILAB, Biomedical Research Institute National Institute of Advanced Industrial Science and Technology (AIST) 1-8-31 Midorigaoka Ikeda 563-8577 Japan
| | - Panče Naumov
- New York University Abu Dhabi POB 129188 Abu Dhabi United Arab Emirates
- Radcliffe Institute for Advanced Study Harvard University 10 Garden St Cambridge MA 02138 USA
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12
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Effect of bulky aryl group on the optical properties of Cypridina oxyluciferin analogues. COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2019.112659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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13
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Min CG, Liu QB, Leng Y, Magalhães CM, Huang SJ, Liu CX, Yang XK, da Silva LP. Mechanistic Insight into the Chemiluminescent Decomposition of Cypridina Dioxetanone and the Chemiluminescent, Fluorescent Properties of the Light Emitter of Cypridina Bioluminescence. J Chem Inf Model 2019; 59:4393-4401. [DOI: 10.1021/acs.jcim.9b00614] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Chun-Gang Min
- School of Materials Science and Engineering, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Research Center for Analysis and Measurement, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Analysis and Test Center of Yunnan Province, Kunming 650093, P. R. China
| | - Qing-Bo Liu
- School of Materials Science and Engineering, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Research Center for Analysis and Measurement, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Analysis and Test Center of Yunnan Province, Kunming 650093, P. R. China
| | - Yan Leng
- Faculty of Chemical Engineering, Kunming University of Science and Technology, Kunming 650093, PR China
| | - Carla M. Magalhães
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto, R. Campo Alegre 697, 4169-007 Porto, Portugal
| | - Shao-Jun Huang
- Research Center for Analysis and Measurement, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Analysis and Test Center of Yunnan Province, Kunming 650093, P. R. China
| | - Chun-Xia Liu
- Research Center for Analysis and Measurement, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Analysis and Test Center of Yunnan Province, Kunming 650093, P. R. China
| | - Xi-Kun Yang
- Research Center for Analysis and Measurement, Kunming University of Science and Technology, Kunming 650093, P. R. China
- Analysis and Test Center of Yunnan Province, Kunming 650093, P. R. China
| | - Luís Pinto da Silva
- Chemistry Research Unit (CIQUP), Faculty of Sciences of University of Porto, R. Campo Alegre 697, 4169-007 Porto, Portugal
- LACOMEPHI, GreenUPorto, Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 697, 4169-007 Porto, Portugal
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14
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Magalhães CM, Esteves da Silva JCG, Pinto da Silva L. Comparative study of the chemiluminescence of coelenterazine, coelenterazine-e and Cypridina luciferin with an experimental and theoretical approach. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2018; 190:21-31. [PMID: 30453161 DOI: 10.1016/j.jphotobiol.2018.11.006] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Revised: 11/05/2018] [Accepted: 11/12/2018] [Indexed: 01/22/2023]
Abstract
Imidazopyrazinone is a typical scaffold present in marine bioluminescence, in which thermal energy is converted into excitation energy in an enzyme-catalyzed reaction. In fact, the imidazopyrazinone scaffold is a common link among organisms of eight phyla. The characterization of the light emission mechanism is essential for the development of future applications in bioimaging, bioanalysis and biomedicine. Herein, we have studied the chemiluminescent reaction of three commercially-available imidazopyrazinones (Cypridina luciferin, Coelenterazine and Coelenterazine-e) in several aprotic solvents at different pH. We have found that at acidic pH only DMF and DMSO consistently present high light emission, while chemiluminescence in other solvents is negligible. We have attributed this to the inability of most solvents to allow for the deprotonation of the imidazopyrazinone core, thereby preventing the oxygenation step. We have also observed that increasing the pH of the solution leads to the inhibition of chemiluminescence, which we attributed to the deprotonation of the dioxetanone intermediate, as the neutral species is the one associated with efficient chemiexcitation. We have also observed that the pKa of dioxetanone increases with the dielectric constant of the medium. Finally, our work indicated that the chemiexcitation yield increases with increasing polarity of the medium, due to a reduced transition dipole moment associated with S0 → S1 transition.
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Affiliation(s)
- Carla M Magalhães
- Chemistry Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; Master in Oncology, Institute of Biomedical Sciences Abel Salazar - University of Porto (ICBAS-UP), Porto, Portugal
| | - Joaquim C G Esteves da Silva
- LACOMEPHI, GreenUP, Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; Chemistry Research Unit (CIQUP), Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Luís Pinto da Silva
- Chemistry Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal; LACOMEPHI, GreenUP, Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal.
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15
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Zhou JG, Yang S, Deng ZY. Electrostatic Catalysis Induced by Luciferases in the Decomposition of the Firefly Dioxetanone and Its Analogue. J Phys Chem B 2017; 121:11053-11061. [DOI: 10.1021/acs.jpcb.7b08000] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Jian-Ge Zhou
- Department of Physics,
Atmospheric Science, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Shan Yang
- Department of Physics,
Atmospheric Science, and Geoscience, Jackson State University, Jackson, Mississippi 39217, United States
| | - Zhen-Yan Deng
- Department of Physics, Shanghai University, Shanghai 200444, China
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16
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Min CG, Ferreira PJ, Pinto da Silva L. Theoretically obtained insight into the mechanism and dioxetanone species responsible for the singlet chemiexcitation of Coelenterazine. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 174:18-26. [DOI: 10.1016/j.jphotobiol.2017.07.012] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Revised: 07/01/2017] [Accepted: 07/14/2017] [Indexed: 12/13/2022]
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17
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Pinto da Silva L, Pereira RFJ, Magalhães CM, Esteves da Silva JCG. Mechanistic Insight into Cypridina Bioluminescence with a Combined Experimental and Theoretical Chemiluminescent Approach. J Phys Chem B 2017; 121:7862-7871. [DOI: 10.1021/acs.jpcb.7b06295] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Luís Pinto da Silva
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
- LACOMEPHI,
Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Rui F. J. Pereira
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Carla M. Magalhães
- Chemistry
Research Unit (CIQUP), Department of Chemistry and Biochemistry, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
| | - Joaquim C. G. Esteves da Silva
- LACOMEPHI,
Department of Geosciences, Environment and Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
- Chemistry
Research Unit (CIQUP), Department of Geosciences, Environment and
Territorial Planning, Faculty of Sciences of University of Porto, R. Campo Alegre 687, 4169-007 Porto, Portugal
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18
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Pinto da Silva L, Magalhães CM, Crista DMA, Esteves da Silva JCG. Theoretical modulation of singlet/triplet chemiexcitation of chemiluminescent imidazopyrazinone dioxetanone via C8-substitution. Photochem Photobiol Sci 2017; 16:897-907. [PMID: 28430271 DOI: 10.1039/c7pp00012j] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
DFT analysis of the thermolysis of C8-substituted imidazopyrazinone dioxetanone allows the rational tuning of the activation barrier and singlet/triplet chemiexcitation.
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Affiliation(s)
- L. Pinto da Silva
- Chemistry Research Unit (CIQUP)
- Department of Chemistry and Biochemistry
- Faculty of Sciences of University of Porto
- 4169-007 Porto
- Portugal
| | - C. M. Magalhães
- Chemistry Research Unit (CIQUP)
- Department of Chemistry and Biochemistry
- Faculty of Sciences of University of Porto
- 4169-007 Porto
- Portugal
| | - D. M. A. Crista
- Chemistry Research Unit (CIQUP)
- Department of Chemistry and Biochemistry
- Faculty of Sciences of University of Porto
- 4169-007 Porto
- Portugal
| | - J. C. G. Esteves da Silva
- Chemistry Research Unit (CIQUP)
- Department of Chemistry and Biochemistry
- Faculty of Sciences of University of Porto
- 4169-007 Porto
- Portugal
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19
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Lee J. Perspectives on Bioluminescence Mechanisms. Photochem Photobiol 2016; 93:389-404. [PMID: 27748947 DOI: 10.1111/php.12650] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2016] [Accepted: 08/24/2016] [Indexed: 11/27/2022]
Abstract
The molecular mechanisms of the bioluminescence systems of the firefly, bacteria and those utilizing imidazopyrazinone luciferins such as coelenterazine are gradually being uncovered using modern biophysical methods such as dynamic (ns-ps) fluorescence spectroscopy, NMR, X-ray crystallography and computational chemistry. The chemical structures of all reactants are well defined, and the spatial structures of the luciferases are providing important insight into interactions within the active cavity. It is generally accepted that the firefly and coelenterazine systems, although proceeding by different chemistries, both generate a dioxetanone high-energy species that undergoes decarboxylation to form directly the product in its S1 state, the bioluminescence emitter. More work is still needed to establish the structure of the products completely. In spite of the bacterial system receiving the most research attention, the chemical pathway for excitation remains mysterious except that it is clearly not by a decarboxylation. Both the coelenterazine and bacterial systems have in common of being able to employ "antenna proteins," lumazine protein and the green-fluorescent protein, for tuning the color of the bioluminescence. Spatial structure information has been most valuable in informing the mechanism of the Ca2+ -regulated photoproteins and the antenna protein interactions.
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Affiliation(s)
- John Lee
- Department of Biochemistry and Molecular Biology, University of Georgia, Athens, GA
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20
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Pinto da Silva L, Magalhães CM, Esteves da Silva JCG. Interstate Crossing-Induced Chemiexcitation Mechanism as the Basis for Imidazopyrazinone Bioluminescence. ChemistrySelect 2016. [DOI: 10.1002/slct.201600688] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Luís Pinto da Silva
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências, Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
| | - Carla M. Magalhães
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências, Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
| | - Joaquim C. G. Esteves da Silva
- Centro de Investigação em Química; Departamento de Química e Bioquímica; Faculdade de Ciências, Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
- Centro de Investigação em Química; Departamento de Geociências, Ambiente e Ordenamento do Território; Faculdade de Ciências, Universidade do Porto; R. Campo Alegre 687 4169-007 Porto Portugal
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21
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Ding BW, Naumov P, Liu YJ. Mechanistic insight into marine bioluminescence: photochemistry of the chemiexcited Cypridina (sea firefly) lumophore. J Chem Theory Comput 2016; 11:591-9. [PMID: 26580916 DOI: 10.1021/ct5009203] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Cypridina hilgendorfii (sea firefly) is a bioluminescent crustacean whose bioluminescence (BL) reaction is archetypal for a number of marine organisms, notably other bioluminescent crustaceans and coelenterates. Unraveling the mechanism of its BL is paramount for future applications of its strongly emissive lumophore. Cypridina produces light in a three-step reaction: First, the cypridinid luciferin is activated by an enzyme to produce a peroxide intermediate, cypridinid dioxetanone (CDO), which then decomposes to generate excited oxyluciferin (OxyCLnH*). Finally, OxyCLnH* deexcites to its ground state along with emission of bright blue light. Unfortunately, the detailed mechanism of the critical step, the thermolysis of CDO, remains unknown, and it is unclear whether the light emitter is generated from a neutral form (CDOH) or anionic form (CDO(-)) of the CDO precursor. In this work, we investigated the key step in the process by modeling the thermal decompositions of both CDOH and CDO(-). The calculated results indicate that the decomposition of CDO(-) occurs via the gradually reversible charge transfer (CT)-initiated luminescence (GRCTIL) mechanism, whereas CDOH decomposes through an entropic trapping mechanism without an obvious CT process. The thermolysis of CDO(-) is sensitive to solvent effects and is energetically favorable in polar environments compared with the thermolysis of CDOH. The thermolysis of CDO(-) produces the excited oxyluciferin anion (OxyCLn(-)*), which combines with a proton from the environment to form OxyCLnH*, the actual light emitter for the natural system.
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Affiliation(s)
- Bo-Wen Ding
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University , Beijing 100875, China
| | - Panče Naumov
- New York University Abu Dhabi , P.O. Box 129188, Abu Dhabi, United Arab Emirates
| | - Ya-Jun Liu
- Key Laboratory of Theoretical and Computational Photochemistry, Ministry of Education, College of Chemistry, Beijing Normal University , Beijing 100875, China
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22
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Ishii Y, Hayashi C, Suzuki Y, Hirano T. Chemiluminescent 2,6-diphenylimidazo[1,2-a]pyrazin-3(7H)-ones: a new entry to Cypridina luciferin analogues. Photochem Photobiol Sci 2014; 13:182-9. [DOI: 10.1039/c3pp50197c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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23
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Kano Y, Tanaka F, Ohta E, Mizuno K, Ikeda H. DFT studies of unique stereoelectronic effects of substituents on divergent reaction pathways of methylenecyclobutanone radical cations. Tetrahedron 2012. [DOI: 10.1016/j.tet.2012.04.079] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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24
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Naumov P, Wu C, Liu YJ, Ohmiya Y. Spectrochemistry and artificial color modulation of Cypridina luminescence: indirect evidence for chemiexcitation of a neutral dioxetanone and emission from a neutral amide. Photochem Photobiol Sci 2012; 11:1151-5. [DOI: 10.1039/c2pp25020a] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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25
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Kano Y, Mizuno K, Ikeda H. Density functional theory study of silole-fused tetramethyleneethane biradicals with orbital interactions. J PHYS ORG CHEM 2011. [DOI: 10.1002/poc.1891] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Yusuke Kano
- Department of Applied Chemistry, Graduate School of Engineering; Osaka Prefecture University; 1-1 Gakuen-cho, Naka-ku, Sakai; Osaka; 599-8531; Japan
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26
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Saito R, Hirano T, Maki S, Niwa H, Ohashi M. Influence of Electron-Donating and Electron-Withdrawing Substituents on the Chemiluminescence Behavior of Coelenterazine Analogs. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2011. [DOI: 10.1246/bcsj.20100185] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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27
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Saito R. Non-CRET-Based Green Chemiluminescence of Imidazopyrazinone Modified by 2,3,6,7-Tetrahydro-1H,5H-benzo[i,j]quinolizine as a Strong Electron-Donating Unit. HETEROCYCLES 2010. [DOI: 10.3987/com-10-12024] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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28
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De Wael F, Jeanjot P, Moens C, Verbeuren T, Cordi A, Bouskela E, Rees JF, Marchand-Brynaert J. In vitro and in vivo studies of 6,8-(diaryl)imidazo[1,2-a]pyrazin-3(7H)-ones as new antioxidants. Bioorg Med Chem 2009; 17:4336-44. [DOI: 10.1016/j.bmc.2009.05.025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2009] [Revised: 05/06/2009] [Accepted: 05/11/2009] [Indexed: 10/20/2022]
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29
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Chapter 6.2 (2006) Six-membered ring systems: diazines and benzo derivatives (2006). ACTA ACUST UNITED AC 2008. [DOI: 10.1016/s0959-6380(08)80016-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
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30
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Hirano T, Takahashi Y, Kondo H, Maki S, Kojima S, Ikeda H, Niwa H. The reaction mechanism for the high quantum yield of Cypridina (Vargula) bioluminescence supported by the chemiluminescence of 6-aryl-2-methylimidazo[1,2-a]pyrazin-3(7H)-ones (Cypridinaluciferin analogues). Photochem Photobiol Sci 2008; 7:197-207. [DOI: 10.1039/b713374j] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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Isobe H, Yamanaka S, Kuramitsu S, Yamaguchi K. Regulation Mechanism of Spin−Orbit Coupling in Charge-Transfer-Induced Luminescence of Imidazopyrazinone Derivatives. J Am Chem Soc 2007; 130:132-49. [DOI: 10.1021/ja073834r] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Hiroshi Isobe
- Department of Chemistry and Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Syusuke Yamanaka
- Department of Chemistry and Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Seiki Kuramitsu
- Department of Chemistry and Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Kizashi Yamaguchi
- Department of Chemistry and Department of Biological Sciences, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
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