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Mamardashvili G, Mamardashvili N, Koifman O. Macrocyclic Receptors for Identification and Selective Binding of Substrates of Different Nature. Molecules 2021; 26:molecules26175292. [PMID: 34500725 PMCID: PMC8433985 DOI: 10.3390/molecules26175292] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 08/04/2021] [Accepted: 08/18/2021] [Indexed: 02/05/2023] Open
Abstract
Molecular recognition of host/guest molecules represents the basis of many biological processes and phenomena. Enzymatic catalysis and inhibition, immunological response, reproduction of genetic information, biological regulatory functions, the effects of drugs, and ion transfer-all these processes include the stage of structure recognition during complexation. The goal of this review is to solicit and publish the latest advances in the design and sensing and binding abilities of porphyrin-based heterotopic receptors with well-defined geometries, the recognition ability of which is realized due to ionic, H-bridge, charge transfer, hydrophobic, and hydrophilic interactions. The dissection of the considered low-energy processes at the molecular scale expands our capabilities in the development of effective systems for controlled recognition, selective delivery, and prolonged release of substrates of different natures (including drugs) to their sites of functioning.
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Nayak S, Ray A, Bhattacharya S. Size selective supramolecular interaction upon molecular complexation of a designed porphyrin with C60 and C70 in solution. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114367] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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3
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Yakushev AA, Averin AD, Sakovich MV, Vatsouro IM, Kovalev VV, Syrbu SA, Koifman OI, Beletskaya IP. Synthesis of the porphyrin-calix[4]arene conjugates via Pd-catalyzed amination and their evaluation as fluorescent chemosensors. J PORPHYR PHTHALOCYA 2020. [DOI: 10.1142/s1088424619501761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
The synthesis of the porphyrin-calix[4]arene conjugates was carried out using the Pd(0)-catalyzed amination of Zn(II) meso-(3-bromophenyl)porphyrinate with bis(3-aminopropoxy)substituted calix[4]arenes (in cone and 1,3-alternate conformations). One of the conjugates was demetalated to give free porphyrin base derivative. The investigation of the fluorescence of the conjugates was studied in the presence of 18 metal perchlorates. The zinc porphyrinate derivatives were found to quench fluorescence in the presence of Cu(II), Al(III) and Cr(III) cations as well as on protonation. Metal-free conjugate was shown to act as a molecular probe for Zn(II), Cu(II) and Cd(II) cations due to strong and different changes of the emission caused by these metals.
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Affiliation(s)
- Alexei A. Yakushev
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
| | - Alexei D. Averin
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
| | - Maria V. Sakovich
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
| | - Ivan M. Vatsouro
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
| | - Vladimir V. Kovalev
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
| | - Sergei A. Syrbu
- G.A. Krestov Institute of Solution Chemistry RAS, 1, Akademicheskaya ul., Ivanovo, 153045, Russia
| | - Oskar I. Koifman
- Ivanovo State University of Chemical Technology, 7, Sheremetevskii Prosp., Ivanovo, 153000, Russia
| | - Irina P. Beletskaya
- Department of Chemistry, Lomonosov Moscow State University, Leninskie Gory, 1-3, Moscow 119991, Russia
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Al-Azemi TF, Vinodh M, Alipour FH. Bis-resorcin[4]arene–bridged porphyrin conjugates: synthesis, fluorescence and binding studies. RSC Adv 2016. [DOI: 10.1039/c6ra13963a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
The synthesis of bis-resorcin[4]arene–bridged porphyrin conjugates and effect of the structure type on binding, and fluorescence quenching behaviors are presented.
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Affiliation(s)
| | - Mickey Vinodh
- Chemistry Department
- Kuwait University
- Safat 13060
- Kuwait
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Ikeda A, Ishikawa M, Aono R, Kikuchi JI, Akiyama M, Shinoda W. Regioselective Recognition of a [60]Fullerene-Bisadduct by Cyclodextrin. J Org Chem 2013; 78:2534-41. [DOI: 10.1021/jo3027609] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Atsushi Ikeda
- Graduate School of Materials
Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Japan
| | - Michiko Ishikawa
- Graduate School of Materials
Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Japan
| | - Ryota Aono
- Graduate School of Materials
Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Japan
| | - Jun-ichi Kikuchi
- Graduate School of Materials
Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Japan
| | - Motofusa Akiyama
- Graduate School of Materials
Science, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma 630-0192, Japan
- Department of Applied Chemistry,
Faculty of Science and Engineering, Chuo University, 1−13−27 Kasuga, Bunkyo-ku, Tokyo 113−8551,
Japan
| | - Wataru Shinoda
- Health Research Institute
(HRI), National Institute of Advanced Industrial Science and Technology (AIST), 1-8-31 Midorigaoka, Ikeda 563-8577,
Japan
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Vinodh M, Alipour FH, Mohamod AA, Al-Azemi TF. Molecular assemblies of porphyrins and macrocyclic receptors: recent developments in their synthesis and applications. Molecules 2012; 17:11763-99. [PMID: 23047480 PMCID: PMC6268645 DOI: 10.3390/molecules171011763] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2012] [Revised: 09/08/2012] [Accepted: 09/11/2012] [Indexed: 11/17/2022] Open
Abstract
Metalloporphyrins which form the core of many bioenzymes and natural light harvesting or electron transport systems, exhibit a variety of selective functional properties depending on the state and surroundings with which they exist in biological systems. The specificity and ease with which they function in each of their bio-functions appear to be largely governed by the nature and disposition of the protein globule around the porphyrin reaction center. Synthetic porphyrin frameworks confined within or around a pre-organized molecular entity like the protein network in natural systems have attracted considerable attraction, especially in the field of biomimetic reactions. At the same time a large number of macrocyclic oligomers such as calixarenes, resorcinarenes, spherands, cyclodextrins and crown ethers have been investigated in detail as efficient molecular receptors. These molecular receptors are synthetic host molecules with enclosed interiors, which are designed three dimensionally to ensure strong and precise molecular encapsulation/recognition. Due to their complex structures, enclosed guest molecules reside in an environment isolated from the outside and as a consequence, physical properties and chemical reactions specific to that environment in these guest species can be identified. The facile incorporation of such molecular receptors into the highly photoactive and catalytically efficient porphyrin framework allows for convenient design of useful molecular systems with unique structural and functional properties. Such systems have provided over the years attractive model systems for the study of various biological and chemical processes, and the design of new materials and molecular devices. This review focuses on the recent developments in the synthesis of porphyrin assemblies associated with cyclodextrins, calixarenes and resorcinarenes and their potential applications in the fields of molecular encapsulation/recognition, and chemical catalysis.
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Affiliation(s)
| | | | | | - Talal F. Al-Azemi
- Chemistry Department, Kuwait University, P.O. Box 5969, Safat 13060, Kuwait
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Electron-rich ligands with multiple tetrathiafulvalene arms. MONATSHEFTE FUR CHEMIE 2011. [DOI: 10.1007/s00706-011-0520-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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8
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Al-Azemi TF, Vinodh M. Synthesis of porphyrin conjugates based on conformationally rigid and flexible resorcin[4]arene frameworks. Tetrahedron 2011. [DOI: 10.1016/j.tet.2011.02.024] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Gil-Ramírez G, Karlen SD, Shundo A, Porfyrakis K, Ito Y, Briggs GAD, Morton JJL, Anderson HL. A Cyclic Porphyrin Trimer as a Receptor for Fullerenes. Org Lett 2010; 12:3544-7. [DOI: 10.1021/ol101393h] [Citation(s) in RCA: 114] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Guzmán Gil-Ramírez
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - Steven D. Karlen
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - Atsuomi Shundo
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - Kyriakos Porfyrakis
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - Yasuhiro Ito
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - G. Andrew D. Briggs
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - John J. L. Morton
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
| | - Harry L. Anderson
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K., and Department of Materials, University of Oxford, Parks Road, Oxford OX1 3PH, U.K
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Pal D, Goswami D, Nayak SK, Chattopadhyay S, Bhattacharya S. Spectroscopic and Theoretical Insights into the Origin of Fullerene−Calix[4]pyrrole Interaction. J Phys Chem A 2010; 114:6776-86. [DOI: 10.1021/jp910809s] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Debabrata Pal
- Department of Chemistry, The University of Burdwan, Golapbag, Burdwan-713 104, India, and Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
| | - Dibakar Goswami
- Department of Chemistry, The University of Burdwan, Golapbag, Burdwan-713 104, India, and Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
| | - Sandip K. Nayak
- Department of Chemistry, The University of Burdwan, Golapbag, Burdwan-713 104, India, and Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
| | - Subrata Chattopadhyay
- Department of Chemistry, The University of Burdwan, Golapbag, Burdwan-713 104, India, and Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
| | - Sumanta Bhattacharya
- Department of Chemistry, The University of Burdwan, Golapbag, Burdwan-713 104, India, and Bio-Organic Division, Bhabha Atomic Research Centre, Trombay, Mumbai-400 085, India
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Rossom WV, Kundrát O, Ngo TH, Lhoták P, Dehaen W, Maes W. An oxacalix[2]arene[2]pyrimidine-bis(Zn-porphyrin) tweezer as a selective receptor towards fullerene C70. Tetrahedron Lett 2010. [DOI: 10.1016/j.tetlet.2010.02.137] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Odo J, Sumihiro M, Okadome T, Inoguchi M, Akashi H, Nakagoe K. Peroxidase-Like Catalytic Activity of Water-Insoluble Complex Linked Fe(III)-Thiacalix[4]arenetetrasulfonate with Tetrakis(1-methylpyridinium-4-yl)porphine via Ionic Interaction. Chem Pharm Bull (Tokyo) 2009; 57:1400-4. [DOI: 10.1248/cpb.57.1400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Junichi Odo
- Faculty of Science, Okayama University of Science
| | | | | | | | - Haruo Akashi
- Research Institute of Natural Sciences, Okayama University of Science
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