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Katsuta R. Advancement in structure elucidation of natural medium-sized lactones through synthesis and theoretical calculations. Biosci Biotechnol Biochem 2024; 88:260-269. [PMID: 38111271 DOI: 10.1093/bbb/zbad179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2023] [Accepted: 12/10/2023] [Indexed: 12/20/2023]
Abstract
Medium-sized lactones are an important class of natural products with diverse biological activities. Unlike conventional organic compounds, these molecules exhibit elevated levels of conformational flexibility. This inherent structural feature occasionally exacerbates the complexities associated with determining their conformation, thereby posing challenges in deciphering their stereochemistry or, in certain instances, leading to incorrect structures. This review highlights specific scenarios in which synthetic studies and computational chemistry have assumed pivotal roles in unveiling the structures of lactones, which have previously eluded definitive elucidation.
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Affiliation(s)
- Ryo Katsuta
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan
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Chen L, Li E, Wu W, Wang G, Zhang J, Guo X, Xing F. The Secondary Metabolites and Biosynthetic Diversity From Aspergillus ochraceus. Front Chem 2022; 10:938626. [PMID: 36092677 PMCID: PMC9452667 DOI: 10.3389/fchem.2022.938626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Accepted: 06/21/2022] [Indexed: 12/04/2022] Open
Abstract
Aspergillus ochraceus, generally known as a food spoilage fungus, is the representative species in Aspergillus section Circumdati. A. ochraceus strains are widely distributed in nature, and usually isolated from cereal, coffee, fruit, and beverage. Increasing cases suggest A. ochraceus acts as human and animal pathogens due to producing the mycotoxins. However, in terms of benefits to mankind, A. ochraceus is the potential source of industrial enzymes, and has excellent capability to produce diverse structural products, including polyketides, nonribosomal peptides, diketopiperazine alkaloids, benzodiazepine alkaloids, pyrazines, bis-indolyl benzenoids, nitrobenzoyl sesquiterpenoids, and steroids. This review outlines recent discovery, chemical structure, biosynthetic pathway, and bio-activity of the natural compounds from A. ochraceus.
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Affiliation(s)
- Lin Chen
- Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Zhengzhou Key Laboratory of Medicinal Resources Research, Huanghe Science and Technology College, Zhengzhou, China
| | - Erfeng Li
- Horticulture and Landscape College, Tianjin Agricultural University, Tianjin, China
| | - Wenqing Wu
- Horticulture and Landscape College, Tianjin Agricultural University, Tianjin, China
| | - Gang Wang
- Comprehensive Utilization of Edible and Medicinal Plant Resources Engineering Technology Research Center, Zhengzhou Key Laboratory of Synthetic Biology of Natural Products, Zhengzhou Key Laboratory of Medicinal Resources Research, Huanghe Science and Technology College, Zhengzhou, China
- Key Laboratory of Agro-Products Quality and Safety Control in Storage and Transport Process, Ministry of Agriculture and Rural Affairs, Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing, China
| | - Jiaqian Zhang
- Horticulture and Landscape College, Tianjin Agricultural University, Tianjin, China
| | - Xu Guo
- Horticulture and Landscape College, Tianjin Agricultural University, Tianjin, China
| | - Fuguo Xing
- Key Laboratory of Agro-Products Quality and Safety Control in Storage and Transport Process, Ministry of Agriculture and Rural Affairs, Institute of Food Science and Technology, Chinese Academy of Agricultural Sciences, Beijing, China
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Takeda K, Katsuta R, Yajima A, Ishigami K, Kuwahara S, Nukada T. Synthesis and DFT-NMR-guided structure revision of cremenolide. Nat Prod Res 2022; 37:1577-1582. [PMID: 35001745 DOI: 10.1080/14786419.2021.2023867] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
The structure of an anti-plant pathogenic and plant growth-promoting nonenolide, namely cremenolide, was revised by an efficient combination of DFT-based theoretical NMR calculations and synthesis of a target diastereomer. Initially, the planar structure of cremenolide was reconsidered by an individual analysis of the reported NMR spectra. Subsequently, the relative configuration was predicted using NMR calculations of all possible diastereomers based on the ωB97X-D functional. Finally, the relative configuration of cremenolide was unambiguously confirmed by preparation of the proposed structure.
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Affiliation(s)
- Keita Takeda
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan.,Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
| | - Ryo Katsuta
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan
| | - Arata Yajima
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan
| | - Ken Ishigami
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan
| | - Shigefumi Kuwahara
- Graduate School of Agricultural Science, Tohoku University, Sendai, Japan
| | - Tomoo Nukada
- Department of Chemistry for Life Sciences and Agriculture, Tokyo University of Agriculture, Tokyo, Japan
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Chang C, Geng J, Du Y, Lv Q, Dong Z, Liu J. Divergent total synthesis of aspinolides B, E and J. Tetrahedron 2019. [DOI: 10.1016/j.tet.2019.06.015] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Chatterjee S, Kuilya TK, Goswami RK. Studies Directed toward the Stereoselective Synthesis of Cytospolide E. ACS OMEGA 2018; 3:1041-1059. [PMID: 31457947 PMCID: PMC6641448 DOI: 10.1021/acsomega.7b01893] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 01/15/2018] [Indexed: 06/10/2023]
Abstract
Our exhaustive effort toward the total synthesis of cytotoxic marine nonanolide cytospolide E has been detailed. To achieve this synthesis, we have explored both the ring-closing metathesis and lactonization-based macrocyclization strategies using a variety of precursors. Unfortunately, none of them provided the desired product. The ring-closing metathesis approach provided mainly the macrocycle with Z-olefin, whereas the macrolactonization strategy culminated in 8-epi-9-epi-cytospolide E following the regioselective formation of a 10-membered macrocycle over a 9-membered macrocycle.
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Affiliation(s)
- Shamba Chatterjee
- Department of Organic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Tapan Kumar Kuilya
- Department of Organic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Rajib Kumar Goswami
- Department of Organic Chemistry, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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Yao H, Wang J, Tong R. Recent Developments in Total Syntheses of Cephalosporolides, Penisporolides, and Ascospiroketals. CHEM REC 2017; 17:1109-1123. [DOI: 10.1002/tcr.201700001] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2017] [Indexed: 11/11/2022]
Affiliation(s)
- Hongliang Yao
- Guangdong Key Laboratory of Plant Resources, School of Life Sciences; Sun Yat-sen University; Xingang Xi Road Guangzhou 510275, Guangdong China
| | - Jian Wang
- Department of Chemistry; The Hong Kong University of Science and Technology; Clear Water Bay, Kowloon Hong Kong China
| | - Rongbiao Tong
- Department of Chemistry; The Hong Kong University of Science and Technology; Clear Water Bay, Kowloon Hong Kong China
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Rej RK, Nanda S. Chemoenzymatic Asymmetric Total Synthesis of Nonanolide (Z)-Cytospolides D, E and Their Stereoisomers. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301365] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Vadhadiya PM, Puranik VG, Ramana CV. The total synthesis and structural revision of stagonolide D. J Org Chem 2012; 77:2169-75. [PMID: 22309439 DOI: 10.1021/jo202138g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The total synthesis of the putative structure of stagonolide D has been completed. The relative and absolute configuration of stagonolide D was established by synthesizing its optical antipode. The adopted strategy involves the construction of the central macrolide employing ring-closing metathesis (RCM), followed by selective protecting group manipulations and a final concomitant -OTBS deprotection and displacement of an -OMs placed next to it, resulting in the formation of the epoxide ring.
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Affiliation(s)
- Paresh M Vadhadiya
- National Chemical Laboratory (CSIR-NCL), Dr. Homi Bhabha Road, Pune-411 008, India
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Lu S, Sun P, Li T, Kurtán T, Mándi A, Antus S, Krohn K, Draeger S, Schulz B, Yi Y, Li L, Zhang W. Bioactive nonanolide derivatives isolated from the endophytic fungus Cytospora sp. J Org Chem 2011; 76:9699-710. [PMID: 22011230 DOI: 10.1021/jo201755v] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Cytospolides F-Q (6-17) and decytospolides A and B (18 and 19), 14 unusual nonanolide derivatives, were isolated from Cytospora sp., an endophytic fungus from Ilex canariensis. The structures were elucidated by means of detailed spectroscopic analysis, chemical interconversion, and X-ray single crystal diffraction. The solution- and solid-state conformers were compared by the combination of experimental methods (X-ray, NMR) supported by DFT calculations of the conformers. Absolute configurations were assigned using the modified Mosher's method and solution- and solid-state TDDFT ECD calculations. In an in vitro cytotoxicity assay toward the tumor cell lines of A549, HCT116, QGY, A375, and U973, the γ-lactone 17 demonstrated a potent growth inhibitory activity toward the cell line A-549, while nonanolide 16 with (2S) configuration showed the strongest activity against cell lines A-549, QGY, and U973. A cell cycle analysis indicated that compound 16 can significantly mediate G1 arrest in A549 tumor cells, confirming the important role of the C-2 methyl in the growth inhibition toward the tumor line. The discovery of an array of new nonanolides demonstrates the productivity of the fungus, and it is an example of chemical diversity, extending the nonanolide family by derivatives formed by ring cleavage, oxidation, esterification, and Michael addition.
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Affiliation(s)
- Shan Lu
- Research Center for Marine Drugs, and Department of Pharmacology, School of Pharmacy, Second Military Medical University, 325 Guo-He Road, Shanghai 200433, PR China
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Lu S, Kurtán T, Yang G, Sun P, Mándi A, Krohn K, Draeger S, Schulz B, Yi Y, Li L, Zhang W. Cytospolides A-E, New Nonanolides from an Endophytic Fungus, Cytospora sp. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100675] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Giri AG, Mondal MA, Puranik VG, Ramana CV. Effect of the allylic substituents on ring closing metathesis: the total synthesis of stagonolide B and 4-epi-stagonolide B. Org Biomol Chem 2010; 8:398-406. [DOI: 10.1039/b916198h] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Barradas S, Urbano A, Carreño M. Concise Enantioselective Synthesis of the Ten-Membered Lactone Cephalosporolide G and Its C-3 Epimer. Chemistry 2009; 15:9286-9. [DOI: 10.1002/chem.200901735] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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15
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Herndon JW. The chemistry of the carbon-transition metal double and triple bond: Annual survey covering the Year 2007. Coord Chem Rev 2009. [DOI: 10.1016/j.ccr.2008.12.013] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
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16
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