1
|
Shen J, R D, Li Z, Oh H, Behera H, Joshi H, Kumar M, Aksimentiev A, Zeng H. Sulfur-Containing Foldamer-Based Artificial Lithium Channels. Angew Chem Int Ed Engl 2023; 62:e202305623. [PMID: 37539755 DOI: 10.1002/anie.202305623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 07/18/2023] [Accepted: 08/02/2023] [Indexed: 08/05/2023]
Abstract
Unlike many other biologically relevant ions (Na+ , K+ , Ca2+ , Cl- , etc) and protons, whose cellular concentrations are closely regulated by highly selective channel proteins, Li+ ion is unusual in that its concentration is well tolerated over many orders of magnitude and that no lithium-specific channel proteins have so far been identified. While one naturally evolved primary pathway for Li+ ions to traverse across the cell membrane is through sodium channels by competing with Na+ ions, highly sought-after artificial lithium-transporting channels remain a major challenge to develop. Here we show that sulfur-containing organic nanotubes derived from intramolecularly H-bonded helically folded aromatic foldamers of 3.6 Å in hollow cavity diameter could facilitate highly selective and efficient transmembrane transport of Li+ ions, with high transport selectivity factors of 15.3 and 19.9 over Na+ and K+ ions, respectively.
Collapse
Affiliation(s)
- Jie Shen
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350116, China
| | - Deepa R
- Department of BioTechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, Telangana, India
| | - Zhongyan Li
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350116, China
| | - Hyeonji Oh
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712, USA
| | - Harekrushna Behera
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712, USA
| | - Himanshu Joshi
- Department of BioTechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, Telangana, India
| | - Manish Kumar
- McKetta Department of Chemical Engineering, The University of Texas at Austin, Austin, TX 78712, USA
| | - Aleksei Aksimentiev
- Department of Physics and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, IL 61820, USA
| | - Huaqiang Zeng
- College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350116, China
| |
Collapse
|
2
|
Electrophilic amination of diarylcadmium reagents: the effect of aminating reagent’s structure. J CHEM SCI 2022. [DOI: 10.1007/s12039-022-02106-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
3
|
Imani Z, Mundlapati VR, Goldsztejn G, Brenner V, Gloaguen E, Guillot R, Baltaze JP, Le Barbu-Debus K, Robin S, Zehnacker A, Mons M, Aitken DJ. Conformation control through concurrent N-H⋯S and N-H⋯O[double bond, length as m-dash]C hydrogen bonding and hyperconjugation effects. Chem Sci 2020; 11:9191-9197. [PMID: 34123167 PMCID: PMC8163419 DOI: 10.1039/d0sc03339a] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
In addition to the classical N-H⋯O[double bond, length as m-dash]C non-covalent interaction, less conventional types of hydrogen bonding, such as N-H⋯S, may play a key role in determining the molecular structure. In this work, using theoretical calculations in combination with spectroscopic analysis in both gas phase and solution phase, we demonstrate that both these H-bonding modes exist simultaneously in low-energy conformers of capped derivatives of Attc, a thietane α-amino acid. 6-Membered ring inter-residue N-H⋯S interactions (C6γ), assisted by hyperconjugation between the thietane ring and the backbone, combine with 5-membered ring intra-residue backbone N-H⋯O[double bond, length as m-dash]C interactions (C5) to provide a C5-C6γ feature that stabilizes a planar geometry in the monomer unit. Two contiguous C5-C6γ features in the planar dimer implicate an unprecedented three-centre H-bond of the type C[double bond, length as m-dash]O⋯H(N)⋯SR2, while the trimer adopts two C5-C6γ features separated by a Ramachandran α-type backbone configuration. These low-energy conformers are fully characterized in the gas phase and support is presented for their existence in solution state.
Collapse
Affiliation(s)
- Zeynab Imani
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), CNRS, Université Paris-Saclay 91405 Orsay France
| | - Venkateswara Rao Mundlapati
- Laboratoire Interactions, Dynamiques et Lasers (LIDYL), CEA, CNRS, Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Gildas Goldsztejn
- Laboratoire Interactions, Dynamiques et Lasers (LIDYL), CEA, CNRS, Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Valérie Brenner
- Laboratoire Interactions, Dynamiques et Lasers (LIDYL), CEA, CNRS, Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Eric Gloaguen
- Laboratoire Interactions, Dynamiques et Lasers (LIDYL), CEA, CNRS, Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - Régis Guillot
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), CNRS, Université Paris-Saclay 91405 Orsay France
| | - Jean-Pierre Baltaze
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), CNRS, Université Paris-Saclay 91405 Orsay France
| | - Katia Le Barbu-Debus
- Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Université Paris-Saclay 91405 Orsay France
| | - Sylvie Robin
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), CNRS, Université Paris-Saclay 91405 Orsay France .,Faculté de Pharmacie, Université de Paris 75006 Paris France
| | - Anne Zehnacker
- Institut des Sciences Moléculaires d'Orsay (ISMO), CNRS, Université Paris-Saclay 91405 Orsay France
| | - Michel Mons
- Laboratoire Interactions, Dynamiques et Lasers (LIDYL), CEA, CNRS, Université Paris-Saclay 91191 Gif-sur-Yvette France
| | - David J Aitken
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), CNRS, Université Paris-Saclay 91405 Orsay France
| |
Collapse
|
4
|
Daşkapan T, Çiçek S. High yielding electrophilic amination method for arylcopper reagents. SYNTHETIC COMMUN 2017. [DOI: 10.1080/00397911.2017.1295082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Tahir Daşkapan
- Department of Chemistry, Faculty of Science, Ankara University, Ankara, Turkey
| | - Semra Çiçek
- Department of Chemistry, Faculty of Science, Ankara University, Ankara, Turkey
| |
Collapse
|
5
|
Daşkapan T, Korkmaz A. Aryl C-N bond formation by electrophilic amination of diarylcadmium reagents with O-substituted ketoximes. SYNTHETIC COMMUN 2016. [DOI: 10.1080/00397911.2016.1177729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Tahir Daşkapan
- Department of Chemistry, Science Faculty, Ankara University, Ankara, Turkey
| | - Adem Korkmaz
- Department of Chemistry, Science Faculty, Ankara University, Ankara, Turkey
| |
Collapse
|
6
|
Synthesis and molecular studies of half-sandwich arene ruthenium and Cp*Rh/Cp*Ir complexes containing (3-picolyl)thiourea derivatives as N,S-bidentate donor ligands. TRANSIT METAL CHEM 2015. [DOI: 10.1007/s11243-015-9946-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
7
|
Biswal HS, Bhattacharyya S, Bhattacherjee A, Wategaonkar S. Nature and strength of sulfur-centred hydrogen bonds: laser spectroscopic investigations in the gas phase and quantum-chemical calculations. INT REV PHYS CHEM 2015. [DOI: 10.1080/0144235x.2015.1022946] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
8
|
Zhang DW, Wang H, Li ZT. Hydrogen Bonding Motifs: New Progresses. LECTURE NOTES IN CHEMISTRY 2015. [DOI: 10.1007/978-3-662-45756-6_1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
|
9
|
Hydrogen Bonds Involving Sulfur: New Insights from ab Initio Calculations and Gas Phase Laser Spectroscopy. CHALLENGES AND ADVANCES IN COMPUTATIONAL CHEMISTRY AND PHYSICS 2015. [DOI: 10.1007/978-3-319-14163-3_2] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
|
10
|
Prusinowska N, Bendzińska-Berus W, Jelecki M, Rychlewska U, Kwit M. Triphenylacetic Acid Amides: Molecular Propellers with Induced Chirality. European J Org Chem 2014. [DOI: 10.1002/ejoc.201403182] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
11
|
Alauddin M, Biswal HS, Gloaguen E, Mons M. Intra-residue interactions in proteins: interplay between serine or cysteine side chains and backbone conformations, revealed by laser spectroscopy of isolated model peptides. Phys Chem Chem Phys 2014; 17:2169-78. [PMID: 25482851 DOI: 10.1039/c4cp04449e] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Intra-residue interactions play an important role in proteins by influencing local folding of the backbone. Taking advantage of the capability of gas phase experiments to provide relevant information on the intrinsic H-bonding pattern of isolated peptide chains, the intra-residue interactions of serine and cysteine residues, i.e., OH/SH···OC(i) C6 and NH(i···)O/S C5 interactions in Ser/Cys residues, are probed by laser spectroscopy of isolated peptides. The strength of these local side chain-main chain interactions, elegantly documented from their IR spectral features for well-defined conformations of the main chain, demonstrates that a subtle competition exists between the two types of intra-residue bond: the C6 H-bond is the major interaction with Ser, in contrast to Cys where C5 interaction takes over. The restricted number of conformers observed in the gas phase experiment with Ser compared to Cys (where both extended and folded forms are observed) also suggests a significant mediation role of these intra-residue interactions on the competition between the several main chain folding patterns.
Collapse
Affiliation(s)
- Mohammad Alauddin
- CEA, IRAMIS, Laboratoire Interactions, Dynamique et Lasers, CEA Saclay, Bât 522, 91191 Gif-sur-Yvette, France.
| | | | | | | |
Collapse
|
12
|
Kumar A, Samal SK, Dash R, Ojha U. Polyacryloyl hydrazide based injectable & stimuli responsive hydrogels with tunable properties. J Mater Chem B 2014; 2:7429-7439. [DOI: 10.1039/c4tb01257g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis and characterization of a series of injectable and stimuli responsive hydrogels based on polyacryloyl hydrazide have been accomplished using dimethyl 2,2′-thiodiacetate, acrylic acid, diethyl malonate and polyethylene glycol diacrylate as cross-linkers through a chemical or dual cross-linking pathway.
Collapse
Affiliation(s)
- Anuj Kumar
- Department of Chemistry
- Rajiv Gandhi Institute of Petroleum Technology Raebareli
- , India
| | | | | | - Umaprasana Ojha
- Department of Chemistry
- Rajiv Gandhi Institute of Petroleum Technology Raebareli
- , India
| |
Collapse
|
13
|
Zhang DW, Zhao X, Hou JL, Li ZT. Aromatic Amide Foldamers: Structures, Properties, and Functions. Chem Rev 2012; 112:5271-316. [PMID: 22871167 DOI: 10.1021/cr300116k] [Citation(s) in RCA: 509] [Impact Index Per Article: 42.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Dan-Wei Zhang
- Department of Chemistry, Fudan
University, 220 Handan Road, Shanghai 200433, China
| | - Xin Zhao
- Shanghai Institute of Organic
Chemistry, Chinese Academy of Sciences, 345 Lingling Road, Shanghai
200032, China
| | - Jun-Li Hou
- Department of Chemistry, Fudan
University, 220 Handan Road, Shanghai 200433, China
| | - Zhan-Ting Li
- Department of Chemistry, Fudan
University, 220 Handan Road, Shanghai 200433, China
| |
Collapse
|
14
|
Hsieh CC, Lee HM, Horng YC. N-[2-(Methylsulfanyl)phenyl]-2-sulfanylbenzamide. Acta Crystallogr Sect E Struct Rep Online 2012; 68:o2400. [PMID: 22904857 PMCID: PMC3414324 DOI: 10.1107/s1600536812029765] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2012] [Accepted: 06/29/2012] [Indexed: 11/24/2022]
Abstract
In the title compound, C14H13NOS2, the S atom with the methyl group is involved in an intramolecular hydrogen bond with the amido H atom. In the crystal, the sulfanyl H atoms form intermolecular hydrogen bonds with the O atoms, connecting the molecules into zigzag chains along the c axis. The two aromatic rings exhibit a small interplanar angle of 16.03 (9)°.
Collapse
|
15
|
Chen J, Vannucci AK, Mebi CA, Okumura N, Borowski SC, Lockett LT, Swenson M, Lichtenberger DL, Evans DH, Glass RS. Catalysis of Electrochemical Reduction of Weak Acids to Produce H2: Role of O‒H…S Hydrogen Bonding. PHOSPHORUS SULFUR 2011. [DOI: 10.1080/10426507.2010.523035] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Jinzhu Chen
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Aaron K. Vannucci
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Charles A. Mebi
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Noriko Okumura
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Susan C. Borowski
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - L. Tori Lockett
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Matthew Swenson
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Dennis L. Lichtenberger
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Dennis H. Evans
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| | - Richard S. Glass
- a Department of Chemistry and Biochemistry , The University of Arizona , Tucson, Arizona, USA
| |
Collapse
|
16
|
Liu Y, Yang Y, Jiang K, Shi D, Sun J. Excited-state N–H⋯S hydrogen bond between indole and dimethyl sulfide: time-dependent density functional theory study. Phys Chem Chem Phys 2011; 13:15299-304. [DOI: 10.1039/c1cp20729f] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
|