1
|
Emenike B, Czabala P, Farhi J, Swaminathan J, Anslyn EV, Spangle J, Raj M. Tertiary Amine Coupling by Oxidation for Selective Labeling of Dimethyl Lysine Post-Translational Modifications. J Am Chem Soc 2024; 146:10621-10631. [PMID: 38584362 PMCID: PMC11027136 DOI: 10.1021/jacs.4c00253] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2024] [Revised: 03/22/2024] [Accepted: 03/25/2024] [Indexed: 04/09/2024]
Abstract
Lysine dimethylation (Kme2) is a crucial post-translational modification (PTM) that regulates biological processes and is implicated in diseases. There is significant interest in globally identifying these methylation marks. Unfortunately, this remains challenging due to the lack of robust technologies for selectively labeling Kme2. To address this, we present a chemical method named tertiary amine coupling by oxidation (TACO). This method selectively modifies Kme2 to aldehydes using Selectfluor and a base. The resulting aldehydes from Kme2 were then functionalized using reductive amination, thiolamine, and oxime chemistry. We successfully demonstrated the versatility of TACO in selectively labeling Kme2 peptides and proteins in complex cell lysate mixtures with varying payloads, including affinity tags and fluorophores. We further showed the application of TACO chemistry for the identification of Kme2 sites at a single-molecule level by fluorosequencing. We discovered novel 30 Kme2 sites, in addition to previously known 5 Kme2 sites, by proteomics analysis of TACO-modified nuclear extracts. Our work establishes a unique strategy for covalently modifying Kme2, facilitating the global identification of low-abundance Kme2-PTMs and their sites within complex cell lysate mixtures.
Collapse
Affiliation(s)
- Benjamin Emenike
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Patrick Czabala
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Jonathan Farhi
- Department
of Radiation Oncology, Emory University
School of Medicine, Atlanta, Georgia 30322, United States
| | - Jagannath Swaminathan
- Department
of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Eric V. Anslyn
- Department
of Chemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Jennifer Spangle
- Department
of Radiation Oncology, Emory University
School of Medicine, Atlanta, Georgia 30322, United States
| | - Monika Raj
- Department
of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| |
Collapse
|
2
|
Cao Y, Zhou D, Ma Y. Selectfluor-mediated oxidative methylenation of amide with N,N-dimethylpropanamide for N,N′-methylenebisamide synthesis. CAN J CHEM 2019. [DOI: 10.1139/cjc-2018-0181] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
A simple and efficient approach for the synthesis of N,N′-methylenebisamides through a Selectfluor-mediated oxidative reaction of aromatic amides and N,N-dimethylpropanamide (DMP) is described. Remarkable results clearly reveal that DMP plays a dual role in this reaction, as both a one-carbon source and an environment-friendly solvent. Moreover, the process provides new strategies for the synthesis of bisamides with advantages of operationally simple, insensitive to atmospheric conditions, and good to high yields.
Collapse
Affiliation(s)
- Yue Cao
- College of Pharmaceutical Science, Zhejiang Chinese Medical University, Hangzhou 311402, P R China
| | - Dongheng Zhou
- College of Pharmaceutical Science, Zhejiang Chinese Medical University, Hangzhou 311402, P R China
- Department of Biochemistry and Molecular Biology, School of Medicine, Zhejiang University, Hangzhou 310058, P R China
| | - Yongmin Ma
- College of Pharmaceutical Science, Zhejiang Chinese Medical University, Hangzhou 311402, P R China
| |
Collapse
|
3
|
Xie LJ, Wang RL, Wang D, Liu L, Cheng L. Visible-light-mediated oxidative demethylation of N6-methyl adenines. Chem Commun (Camb) 2017; 53:10734-10737. [DOI: 10.1039/c7cc05544g] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A novel solution for the chemical modulation of RNA epigenetics via biologically compatible photo-catalysis under visible light irradiation has been described.
Collapse
Affiliation(s)
- Li-Jun Xie
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- CAS Key Laboratory of Molecular Recognition and Function
- CAS Research/Education Center for Excellence in Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
| | - Rui-Li Wang
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- CAS Key Laboratory of Molecular Recognition and Function
- CAS Research/Education Center for Excellence in Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
| | - Dong Wang
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- CAS Key Laboratory of Molecular Recognition and Function
- CAS Research/Education Center for Excellence in Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
| | - Li Liu
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- CAS Key Laboratory of Molecular Recognition and Function
- CAS Research/Education Center for Excellence in Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
| | - Liang Cheng
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- CAS Key Laboratory of Molecular Recognition and Function
- CAS Research/Education Center for Excellence in Molecular Sciences
- Institute of Chemistry
- Chinese Academy of Sciences
| |
Collapse
|
4
|
Jiang X, Zhang F, Yang J, Yu P, Yi P, Sun Y, Wang Y. Fluorination-Oxidation of 2-Hydroxymethylindole Using Selectfluor. Adv Synth Catal 2016. [DOI: 10.1002/adsc.201600786] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Xiaojian Jiang
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Feng Zhang
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Junjie Yang
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Pei Yu
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Peng Yi
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Yewei Sun
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| | - Yuqiang Wang
- Institute of New Drug Research and Guangzhou Key Laboratory of Innovative Chemical Drug Research in Cardio-cerebrovascular Diseases, J; inan University College of Pharmacy; Guangzhou 510632 People's Republic of China
| |
Collapse
|
5
|
Chen Q, Zeng J, Yan X, Huang Y, Du Z, Zhang K, Wen C. Mild and efficient oxidation of phosphorus(III) compounds with Selectfluor. Tetrahedron Lett 2016. [DOI: 10.1016/j.tetlet.2016.06.078] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
6
|
Synthesis of Quaternary 3,3-Disubstituted 2-Oxindoles from 2-Substituted Indole Using Selectfluor. Org Lett 2016; 18:3154-7. [DOI: 10.1021/acs.orglett.6b01367] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
7
|
Lv Y, Sun K, Pu W, Mao S, Li G, Niu J, Chen Q, Wang T. Metal-free intermolecular C–O cross-coupling reactions: synthesis of N-hydroxyimide esters. RSC Adv 2016. [DOI: 10.1039/c6ra22653a] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
Abstract
Selectfluor-mediated intermolecular C–O cross coupling reaction for the synthesis of N-hydroxyimide esters was achieved under metal-free conditions.
Collapse
Affiliation(s)
- Yunhe Lv
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
- Jilin Province Key Laboratory of Organic Functional Molecular Design & Synthesis
| | - Kai Sun
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Weiya Pu
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Shukuan Mao
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Gang Li
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Jiejie Niu
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Qian Chen
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| | - Tingting Wang
- College of Chemistry and Chemical Engineering
- Anyang Normal University
- Anyang
- China
| |
Collapse
|
8
|
Wu X, Chen DF, Chen SS, Zhu YF. Synthesis of Polycyclic Amines through Mild Metal-Free Tandem Cross-Dehydrogenative Coupling/Intramolecular Hydroarylation ofN-Aryltetrahydroisoquinolines and Crotonaldehyde. European J Org Chem 2014. [DOI: 10.1002/ejoc.201403375] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
9
|
Parmar D, Rueping M. Mild and metal-free oxy- and amino-fluorination for the synthesis of fluorinated heterocycles. Chem Commun (Camb) 2014; 50:13928-31. [DOI: 10.1039/c4cc05027d] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
|
10
|
Ma Y, Zhang G, Zhang J, Yang D, Wang R. Organocatalyzed Asymmetric Oxidative Coupling of α-Csp3-H of Tertiary Amines to α,β-Unsaturated γ-Butyrolactam: Synthesis of MBH-Type Products. Org Lett 2014; 16:5358-61. [DOI: 10.1021/ol5025597] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Yunxia Ma
- School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510006, P. R. China
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, P. R. China
| | - Gen Zhang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, P. R. China
| | - Jinlong Zhang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, P. R. China
| | - Dongxu Yang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, P. R. China
| | - Rui Wang
- School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510006, P. R. China
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, Lanzhou University, Lanzhou 730000, P. R. China
| |
Collapse
|
11
|
Zhang Y, Luo S, Feng B, Zhu C. Gold-Catalyzed Direct Indolation of Tetrahydroisoquinolines. CHINESE J CHEM 2012. [DOI: 10.1002/cjoc.201201154] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
|
12
|
Selectfluor™ F-TEDA-BF4 mediated thiocyanation or isothiocyanation of alcohols by in situ generation of [+SCN] under heterogeneous and neutral conditions. J Fluor Chem 2012. [DOI: 10.1016/j.jfluchem.2012.03.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
13
|
Boess E, Schmitz C, Klussmann M. A Comparative Mechanistic Study of Cu-Catalyzed Oxidative Coupling Reactions with N-Phenyltetrahydroisoquinoline. J Am Chem Soc 2012; 134:5317-25. [DOI: 10.1021/ja211697s] [Citation(s) in RCA: 343] [Impact Index Per Article: 28.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Esther Boess
- Max-Planck-Institut fuer Kohlenforschung, Kaiser-Wilhelm-Platz
1, 45470 Muelheim an der Ruhr, Germany
| | - Corinna Schmitz
- Max-Planck-Institut fuer Kohlenforschung, Kaiser-Wilhelm-Platz
1, 45470 Muelheim an der Ruhr, Germany
| | - Martin Klussmann
- Max-Planck-Institut fuer Kohlenforschung, Kaiser-Wilhelm-Platz
1, 45470 Muelheim an der Ruhr, Germany
| |
Collapse
|