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Nuutila A, Xiao X, van der Heul HU, van Wezel GP, Dinis P, Elsayed SS, Metsä-Ketelä M. Divergence of Classical and C-Ring-Cleaved Angucyclines: Elucidation of Early Tailoring Steps in Lugdunomycin and Thioangucycline Biosynthesis. ACS Chem Biol 2024; 19:1131-1141. [PMID: 38668630 PMCID: PMC11106748 DOI: 10.1021/acschembio.4c00082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 04/16/2024] [Accepted: 04/16/2024] [Indexed: 05/18/2024]
Abstract
Angucyclines are an important group of microbial natural products that display tremendous chemical diversity. Classical angucyclines are composed of a tetracyclic benz[a]anthracene scaffold with one ring attached at an angular orientation. However, in atypical angucyclines, the polyaromatic aglycone is cleaved at A-, B-, or C-rings, leading to structural rearrangements and enabling further chemical variety. Here, we have elucidated the branching points in angucycline biosynthesis leading toward cleavage of the C-ring in lugdunomycin and thioangucycline biosynthesis. We showed that 12-hydroxylation and 6-ketoreduction of UWM6 are shared steps in classical and C-ring-cleaved angucycline pathways, although the bifunctional 6-ketoreductase LugOIIred harbors additional unique 1-ketoreductase activity. We identified formation of the key intermediate 8-O-methyltetrangomycin by the LugN methyltransferase as the branching point toward C-ring-cleaved angucyclines. The final common step in lugdunomycin and thioangucycline biosynthesis is quinone reduction, catalyzed by the 7-ketoreductases LugG and TacO, respectively. In turn, the committing step toward thioangucyclines is 12-ketoreduction catalyzed by TacA, for which no orthologous protein exists on the lugdunomycin pathway. Our results confirm that quinone reductions are early tailoring steps and, therefore, may be mechanistically important for subsequent C-ring cleavage. Finally, many of the tailoring enzymes harbored broad substrate promiscuity, which we utilized in combinatorial enzymatic syntheses to generate the angucyclines SM 196 A and hydranthomycin. We propose that enzyme promiscuity and the competition of many of the enzymes for the same substrates lead to a branching biosynthetic network and formation of numerous shunt products typical for angucyclines rather than a canonical linear metabolic pathway.
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Affiliation(s)
- Aleksi Nuutila
- Department
of Life Technologies, University of Turku, FIN20014 Turku, Finland
| | - Xiansha Xiao
- Molecular
Biotechnology, Leiden University, PO Box 9505, 2300RA Leiden, The
Netherlands
| | - Helga U. van der Heul
- Molecular
Biotechnology, Leiden University, PO Box 9505, 2300RA Leiden, The
Netherlands
| | - Gilles P. van Wezel
- Molecular
Biotechnology, Leiden University, PO Box 9505, 2300RA Leiden, The
Netherlands
| | - Pedro Dinis
- Department
of Life Technologies, University of Turku, FIN20014 Turku, Finland
| | - Somayah S. Elsayed
- Molecular
Biotechnology, Leiden University, PO Box 9505, 2300RA Leiden, The
Netherlands
| | - Mikko Metsä-Ketelä
- Department
of Life Technologies, University of Turku, FIN20014 Turku, Finland
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Uiterweerd M, Minnaard AJ. Racemic Total Synthesis of Elmonin and Pratenone A, from Streptomyces, Using a Common Intermediate Prepared by peri-Directed C-H Functionalization. Org Lett 2022; 24:9361-9365. [PMID: 36533980 PMCID: PMC9806855 DOI: 10.1021/acs.orglett.2c03449] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Indexed: 12/23/2022]
Abstract
The first total synthesis of elmonin and pratenone A, two complex rearranged angucyclinones from Streptomyces, is reported. Using peri-directed C-H functionalization, the key naphthalene fragment present in both synthetic targets was efficiently prepared. Coupling to two anisole-derived fragments gave access to the natural products, in which elmonin was prepared using a biomimetic spiro-ketalization.
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Affiliation(s)
- Michiel
T. Uiterweerd
- University of Groningen, Stratingh Institute for Chemistry, Nijenborgh 7, 9747
AG Groningen, The Netherlands
| | - Adriaan J. Minnaard
- University of Groningen, Stratingh Institute for Chemistry, Nijenborgh 7, 9747
AG Groningen, The Netherlands
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Spiegel M, Sroka Z. Natural dihydroisobenzofuran derivatives as a template for promising radical scavengers: theoretical insights into structure–activity relationships, thermochemistry and kinetics. Theor Chem Acc 2022. [DOI: 10.1007/s00214-022-02922-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
Abstract
AbstractDihydroisobenzofuran heterocycle is a structural motif found in a number of medications with anti-tumour, anti-diabetic, and antibacterial activities. It is also found in a slew of natural substances, most notably fungus metabolites, which have been shown to possess credible radical scavenging activity. Density functional theory studies on three different derivatives were conducted to investigate their electronic structures as well as thermochemical and kinetic behaviour against ·OOH, ·OH, and ·OCH3 in biologically relevant solvents, with the goal of elucidating structure–activity relationships and discussing the potential role of the scaffolds as a template for new semisynthetic antioxidants. The importance of resonance and inductive effects, and also hydrogen bonding, has been underlined, but most importantly, it has been demonstrated that all structures have considerable scavenging potential against all studied radicals, with reactions rates close to the diffusion limit.
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Qiu Z, Wu Y, Lan K, Wang S, Yu H, Wang Y, Wang C, Cao S. Cytotoxic compounds from marine actinomycetes: Sources, Structures and Bioactivity. ACTA MATERIA MEDICA 2022; 1:445-475. [PMID: 36588746 PMCID: PMC9802659 DOI: 10.15212/amm-2022-0028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Marine actinomycetes produce a substantial number of natural products with cytotoxic activity. The strains of actinomycetes were isolated from different sources like fishes, coral, sponges, seaweeds, mangroves, sediments etc. These cytotoxic compounds can be categorized briefly into four classes: polyketides, non-ribosomal peptides and hybrids, isoprenoids and hybrids, and others, among which majority are polyketides (146). Twenty two out of the 254 compounds showed potent cytotoxicity with IC50 values at ng/mL or nM level. This review highlights the sources, structures and antitumor activity of 254 natural products isolated from marine actinomycetes, which were new when they were reported from 1989 to 2020.
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Affiliation(s)
- Ziyan Qiu
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Yinshuang Wu
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Kunyan Lan
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Shiyi Wang
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Huilin Yu
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Yufei Wang
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China
| | - Cong Wang
- Key Laboratory of Chemistry and Engineering of Forest Products, State Ethnic Affairs Commission, Guangxi Collaborative Innovation Center for Chemistry and Engineering of Forest Products, School of Chemistry and Chemical Engineering, Guangxi Minzu University, Nanning 530006, China,Correspondence: (C.W.); (S.C.)
| | - Shugeng Cao
- Department of Pharmaceutical Sciences, Daniel K. Inouye College of Pharmacy, University of Hawai’i at Hilo, 200 W. Kawili St., Hilo, HI 96720, USA,Correspondence: (C.W.); (S.C.)
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Ikonnikova VA, Solyev PN, Terekhov SS, Alferova VA, Tyurin AP, Korshun VA, Baranov MS, Mikhaylov AA. Total Synthesis of Elmenols A and B and Related Rearranged Angucyclinones. ChemistrySelect 2021. [DOI: 10.1002/slct.202103755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Viktoria A. Ikonnikova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Higher Chemical College Mendeleev University of Chemical Technology of Russia 9 Miusskaya sq. 125047 Moscow Russia
| | - Pavel N. Solyev
- Engelhardt Institute of Molecular Biology of the Russian Academy of Sciences 32 Vavilova St. Moscow 119991 Russia
| | - Stanislav S. Terekhov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Department of Chemistry Lomonosov Moscow State University, 1-3 Leninskiye Gory Moscow 119991 Russia
| | - Vera A. Alferova
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Anton P. Tyurin
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Vladimir A. Korshun
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- Gause Institute of New Antibiotics 11 B. Pirogovskaya Moscow 119021 Russia
| | - Mikhail S. Baranov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
| | - Andrey A. Mikhaylov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences 16/10 Miklukho-Maklaya St. Moscow 117997 Russia
- National Research University Higher School of Economics Faculty of Chemistry 20 Myasnitskaya St. Moscow 101000 Russia
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Mikhaylov AA, Ikonnikova VA, Solyev PN. Disclosing biosynthetic connections and functions of atypical angucyclinones with a fragmented C-ring. Nat Prod Rep 2021; 38:1506-1517. [PMID: 33480893 DOI: 10.1039/d0np00082e] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
This review on atypical angucyclinones possessing an aromatic cleavage of the C-ring covers literature between 1995 and early 2020.The unusual framework of the middle C-ring, "broken" as a result of biotransformations and oxidations in vivo and bearing an sp3-C connection, is of interest for biosynthetic investigations. The reported 39 natural compounds (55 including stereoisomers) have been analyzed and arranged into three structural groups. The biosynthetic origin of all these compounds has been thoroughly reviewed and revised, based on the found connections with oxidized angucyclinone structures. The data on biological activities has been summarized. Careful consideration of the origin of the structure allowed us to outline a hypothesis on the biological function as well as prospective applications of such atypical angucyclinones.
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Affiliation(s)
- Andrey A Mikhaylov
- Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences, 16/10 Miklukho-Maklaya St., Moscow, 117997, Russia.
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Abdelfattah MS, Elmallah MIY, Faraag AHI, Hebishy AMS, Ali NH. Heliomycin and tetracinomycin D: anthraquinone derivatives with histone deacetylase inhibitory activity from marine sponge-associated Streptomyces sp. SP9. 3 Biotech 2018; 8:282. [PMID: 29881660 DOI: 10.1007/s13205-018-1304-1] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Accepted: 05/24/2018] [Indexed: 01/04/2023] Open
Abstract
Several actinomycetes strains were isolated from different marine sponges collected from the Red Sea shore in Egypt. The efficiency of their crude extracts to inhibit histone deacetylase (HDAC) enzyme was investigated in the nuclear extract of Hela cell line. The crude extract corresponding to Streptomyces sp. SP9 isolated from the marine sponge Pseudoceratina arabica showed a promising HDAC inhibitory activity with 64 and 81% at 50 and 100 µg/ml, respectively. The strain was identified as Streptomyces sp. by phylogenetic analyses based on its 16S rRNA gene sequence. The major compounds of Streptomyces sp. SP9 were isolated and purified by different chromatographic methods. The chemical structure of the isolated compounds was identified on the basis of their spectroscopic data including mass, 1H and 13C NMR, and by comparison with those of authenticated samples. Structures of compounds 1 and 2 were established as heliomycin and tetracenomycin D, respectively. These compounds exhibited HDAC inhibitory activities with IC50 values of 29.8 ± 0.04 µg/ml for heliomycin (1) and 10.9 ± 0.02 µg/ml for tetracenomycin D (2). A computational docking study for compounds 1 and 2 against HDAC1, HDAC2, and HDAC3 was performed to formulate a hypothetical mechanism by which the tested compounds inhibit HDAC. Tetracenomycin D (2) showed a good binding interactions with HDAC2 (- 5.230 kcal/mol) and HDAC3 (- 6.361 kcal/mol).
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Affiliation(s)
- Mohamed Saleh Abdelfattah
- 1Marine Natural Products Unit (MNPRU), Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
- 2Chemistry Department, Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
| | - Mohammed Ismail Youssef Elmallah
- 1Marine Natural Products Unit (MNPRU), Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
- 2Chemistry Department, Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
| | - Ahmed Hassan Ibrahim Faraag
- 3Botany and Microbiology Department, Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
- 4Faculty of Science, Bioinformatics Center, Helwan University, Ain Helwan, 11795 Cairo, Egypt
| | - Ali Mohamed Salah Hebishy
- 1Marine Natural Products Unit (MNPRU), Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
- 2Chemistry Department, Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
| | - Neama Hassan Ali
- 2Chemistry Department, Faculty of Science, Helwan University, Ain Helwan, 11795 Cairo, Egypt
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Yixizhuoma, Ishikawa N, Abdelfattah MS, Ishibashi M. Elmenols C-H, new angucycline derivatives isolated from a culture of Streptomyces sp. IFM 11490. J Antibiot (Tokyo) 2017; 70:601-606. [DOI: 10.1038/ja.2016.158] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 11/25/2016] [Accepted: 11/29/2016] [Indexed: 01/01/2023]
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9
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Isolation and characterization of marine-derived actinomycetes with cytotoxic activity from the Red Sea coast. Asian Pac J Trop Biomed 2016. [DOI: 10.1016/j.apjtb.2016.06.004] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
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10
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Abdelfattah MS, Arai MA, Ishibashi M. Bioactive Secondary Metabolites with Unique Aromatic and Heterocyclic Structures Obtained from Terrestrial Actinomycetes Species. Chem Pharm Bull (Tokyo) 2016; 64:668-75. [DOI: 10.1248/cpb.c16-00038] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Affiliation(s)
- Mohamed S. Abdelfattah
- Graduate School of Pharmaceutical Sciences, Chiba University
- Chemistry Department, Faculty of Science,
Helwan University
| | - Midori A. Arai
- Graduate School of Pharmaceutical Sciences, Chiba University
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