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Teixeira RI, Andresini M, Luisi R, Benyahia B. Computer-Aided Retrosynthesis for Greener and Optimal Total Synthesis of a Helicase-Primase Inhibitor Active Pharmaceutical Ingredient. JACS AU 2024; 4:4263-4272. [PMID: 39781029 PMCID: PMC11709084 DOI: 10.1021/jacsau.4c00624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Revised: 08/23/2024] [Accepted: 09/13/2024] [Indexed: 01/11/2025]
Abstract
This study leverages and upgrades the capabilities of computer-aided retrosynthesis (CAR) in the systematic development of greener and more efficient total synthetic routes for the active pharmaceutical ingredient (API) IM-204, a helicase-primase inhibitor that demonstrated enhanced efficacy against Herpes simplex virus (HSV) infections. Using various CAR tools, several total synthetic routes were uncovered, evaluated, and experimentally validated, with the goal to maximize selectivity and yield and minimize the environmental impact. The CAR tools revealed several synthetic options under different constraints, which can overperform the patented synthetic route used as a reference. The selected CAR-based route demonstrated a significant improvement of the total yield from 8% (patented route) to 26%, along with a moderate improvement in the overall green performance. It was also shown that a human-in-the-loop approach can be synergistically combined with CAR to drive further improvements and deliver greener synthetic alternatives. This strategy further enhanced the green metrics by substituting solvents and merging two steps into one. These changes led to a significant improvement in the overall yield of IM-204 synthesis from 8 to 35%. Additionally, the green performance score, based on the GreenMotion metrics, was improved from 0 to 18, and the total cost of the building blocks was reduced by 550-fold. This work demonstrates the potential of CAR in drug development, highlighting its capacity to streamline synthesis processes, reduce environmental footprint, and lower production costs, thereby advancing the field toward more efficient and sustainable practices.
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Affiliation(s)
- Rodolfo I. Teixeira
- Department
of Chemical Engineering, Loughborough University, Loughborough LE11 3TU, U.K.
| | - Michael Andresini
- Department
of Pharmacy−Drug Sciences, University
of Bari “A. Moro”, Bari 70125, Italy
| | - Renzo Luisi
- Department
of Pharmacy−Drug Sciences, University
of Bari “A. Moro”, Bari 70125, Italy
| | - Brahim Benyahia
- Department
of Chemical Engineering, Loughborough University, Loughborough LE11 3TU, U.K.
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2
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Paoli-Lombardo R, Primas N, Bourgeade-Delmas S, Hutter S, Sournia-Saquet A, Boudot C, Brenot E, Castera-Ducros C, Corvaisier S, Since M, Malzert-Fréon A, Courtioux B, Valentin A, Verhaeghe P, Azas N, Rathelot P, Vanelle P. Improving Aqueous Solubility and In Vitro Pharmacokinetic Properties of the 3-Nitroimidazo[1,2- a]pyridine Antileishmanial Pharmacophore. Pharmaceuticals (Basel) 2022; 15:ph15080998. [PMID: 36015146 PMCID: PMC9415646 DOI: 10.3390/ph15080998] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Revised: 08/11/2022] [Accepted: 08/12/2022] [Indexed: 10/25/2022] Open
Abstract
An antileishmanial structure−activity relationship (SAR) study focused on positions 2 and 8 of the imidazo[1,2-a]pyridine ring was conducted through the synthesis of 22 new derivatives. After being screened on the promatigote and axenic amastigote stages of Leishmania donovani and L. infantum, the best compounds were tested against the intracellular amastigote stage of L. infantum and evaluated regarding their in vitro physicochemical and pharmacokinetic properties, leading to the discovery of a new antileishmanial6-chloro-3-nitro-8-(pyridin-4-yl)-2-[(3,3,3-trifluoropropylsulfonyl)methyl]imidazo[1,2-a]pyridine hit. It displayed low cytotoxicities on both HepG2 and THP1 cell lines (CC50 > 100 µM) associated with a good activity against the intracellular amastigote stage of L. infantum (EC50 = 3.7 µM versus 0.4 and 15.9 µM for miltefosine and fexinidazole, used as antileishmanial drug references). Moreover, in comparison with previously reported derivatives in the studied series, this compound displayed greatly improved aqueous solubility, good mouse microsomal stability (T1/2 > 40 min) and high gastrointestinal permeability in a PAMPA model, making it an ideal candidate for further in vivo studies on an infectious mouse model.
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Affiliation(s)
- Romain Paoli-Lombardo
- CNRS, ICR UMR 7273, Team Pharmaco-Chimie Radicalaire, Faculté de Pharmacie, Aix Marseille University, 27 Boulevard Jean Moulin, CS30064, CEDEX 05, 13385 Marseille, France
| | - Nicolas Primas
- CNRS, ICR UMR 7273, Team Pharmaco-Chimie Radicalaire, Faculté de Pharmacie, Aix Marseille University, 27 Boulevard Jean Moulin, CS30064, CEDEX 05, 13385 Marseille, France
- Service Central de la Qualité et de l’Information Pharmaceutiques, Hôpital de la Conception, AP-HM, 13005 Marseille, France
- Correspondence: (N.P.); (S.B.-D.); (P.V.)
| | - Sandra Bourgeade-Delmas
- UMR 152 PHARMA-DEV, IRD, UPS, Université de Toulouse, 31062 Toulouse, France
- Correspondence: (N.P.); (S.B.-D.); (P.V.)
| | - Sébastien Hutter
- IHU Méditerranée Infection, UMR VITROME-Tropical Eukaryotic Pathogens, Aix Marseille University, 19–21 Boulevard Jean Moulin, 13005 Marseille, France
| | | | - Clotilde Boudot
- UMR Inserm 1094, Neuroépidémiologie Tropicale, Faculté de Pharmacie, Université de Limoges, 2 Rue Du Dr. Marcland, 87025 Limoges, France
| | - Emilie Brenot
- UMR Inserm 1094, Neuroépidémiologie Tropicale, Faculté de Pharmacie, Université de Limoges, 2 Rue Du Dr. Marcland, 87025 Limoges, France
| | - Caroline Castera-Ducros
- CNRS, ICR UMR 7273, Team Pharmaco-Chimie Radicalaire, Faculté de Pharmacie, Aix Marseille University, 27 Boulevard Jean Moulin, CS30064, CEDEX 05, 13385 Marseille, France
- Service Central de la Qualité et de l’Information Pharmaceutiques, Hôpital de la Conception, AP-HM, 13005 Marseille, France
| | | | - Marc Since
- UNICAEN, CERMN, Normandie University, 14000 Caen, France
| | | | - Bertrand Courtioux
- UMR Inserm 1094, Neuroépidémiologie Tropicale, Faculté de Pharmacie, Université de Limoges, 2 Rue Du Dr. Marcland, 87025 Limoges, France
| | - Alexis Valentin
- UMR 152 PHARMA-DEV, IRD, UPS, Université de Toulouse, 31062 Toulouse, France
| | - Pierre Verhaeghe
- CNRS, UPS, LCC-CNRS, Université de Toulouse, 31077 Toulouse, France
- Service de Pharmacie, CHU de Nîmes, 30029 Nîmes, France
| | - Nadine Azas
- IHU Méditerranée Infection, UMR VITROME-Tropical Eukaryotic Pathogens, Aix Marseille University, 19–21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Pascal Rathelot
- CNRS, ICR UMR 7273, Team Pharmaco-Chimie Radicalaire, Faculté de Pharmacie, Aix Marseille University, 27 Boulevard Jean Moulin, CS30064, CEDEX 05, 13385 Marseille, France
- Service Central de la Qualité et de l’Information Pharmaceutiques, Hôpital de la Conception, AP-HM, 13005 Marseille, France
| | - Patrice Vanelle
- CNRS, ICR UMR 7273, Team Pharmaco-Chimie Radicalaire, Faculté de Pharmacie, Aix Marseille University, 27 Boulevard Jean Moulin, CS30064, CEDEX 05, 13385 Marseille, France
- Service Central de la Qualité et de l’Information Pharmaceutiques, Hôpital de la Conception, AP-HM, 13005 Marseille, France
- Correspondence: (N.P.); (S.B.-D.); (P.V.)
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3
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Andresini M, Tota A, Degennaro L, Bull JA, Luisi R. Synthesis and Transformations of NH-Sulfoximines. Chemistry 2021; 27:17293-17321. [PMID: 34519376 PMCID: PMC9291533 DOI: 10.1002/chem.202102619] [Citation(s) in RCA: 58] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Indexed: 11/17/2022]
Abstract
Recent years have seen a marked increase in the occurrence of sulfoximines in the chemical sciences, often presented as valuable motifs for medicinal chemistry. This has been prompted by both pioneering works taking sulfoximine containing compounds into clinical trials and the concurrent development of powerful synthetic methods. This review covers recent developments in the synthesis of sulfoximines concentrating on developments since 2015. This includes extensive developments in both S-N and S-C bond formations. Flow chemistry processes for sulfoximine synthesis are also covered. Finally, subsequent transformations of sulfoximines, particularly in N-functionalization are reviewed, including N-S, N-P, N-C bond forming processes and cyclization reactions.
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Affiliation(s)
- Michael Andresini
- Department of Pharmacy-Drug SciencesUniversity of Bari “A. Moro”Via E. Orabona 470125BariItaly
| | - Arianna Tota
- Department of Pharmacy-Drug SciencesUniversity of Bari “A. Moro”Via E. Orabona 470125BariItaly
| | - Leonardo Degennaro
- Department of Pharmacy-Drug SciencesUniversity of Bari “A. Moro”Via E. Orabona 470125BariItaly
| | - James A. Bull
- Department of Chemistry Imperial College LondonMolecular Sciences Research Hub White City Campus, Wood LaneLondonW12 0BZUK
| | - Renzo Luisi
- Department of Pharmacy-Drug SciencesUniversity of Bari “A. Moro”Via E. Orabona 470125BariItaly
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Gao Y, Zhao Q, Li L, Ma YN. Synthesis of Six-Membered N-Heterocycle Frameworks Based on Intramolecular Metal-Free N-Centered Radical Chemistry. CHEM REC 2021; 22:e202100218. [PMID: 34618405 DOI: 10.1002/tcr.202100218] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2021] [Revised: 09/14/2021] [Accepted: 09/15/2021] [Indexed: 12/29/2022]
Abstract
The formation of intramolecular C-N bond represents a powerful strategy in organic transformation as the great importance of N-heterocycles in the fields of natural products and bioactive molecules. This personal account describes the synthesis of cyclic phosphinamidation, benzosultam, benzosulfoximine, phenanthridine and their halogenated compounds through transition-metal-free intramolecular oxidative C-N bond formation. Mechanism study reveals that N-X bond is initially formed under the effect of hypervalent halogen, which is very unstable and easily undergoes thermal or light homolytic cleavage to generate nitrogen radical. Then the nitrogen radical is trapped by the arene to give aryl radical. Rearomatization of aryl radical under the oxidant to provide corresponding N-heterocycle. Under suitable conditions, the N-heterocycles can be further transformed to halogenated N-heterocycles.
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Affiliation(s)
- Yan Gao
- Henan Key Laboratory of Boron Chemistry and Advanced Energy Materials, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China
| | - Qianyi Zhao
- Henan Key Laboratory of Boron Chemistry and Advanced Energy Materials, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China
| | - Lixin Li
- Academy of Chinese Medical Sciences, Henan University of Chinese Medicine, 156 Jinshui East Road, Zhengzhou, 450046, Henan, China
| | - Yan-Na Ma
- Green Catalysis Center and College of Chemistry, Zhengzhou University, Zhengzhou, 450001, China
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5
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Zheng W, Chen X, Chen F, He Z, Zeng Q. Syntheses and Transformations of Sulfoximines. CHEM REC 2020; 21:396-416. [DOI: 10.1002/tcr.202000134] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 12/09/2020] [Accepted: 12/10/2020] [Indexed: 12/17/2022]
Affiliation(s)
- Wenting Zheng
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection College of Materials Chemistry & Chemical Engineering Chengdu University of Technology 1 Dongsan Road, Erxianqiao Chengdu 610059 China
| | - Xianlie Chen
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection College of Materials Chemistry & Chemical Engineering Chengdu University of Technology 1 Dongsan Road, Erxianqiao Chengdu 610059 China
| | - Feng Chen
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection College of Materials Chemistry & Chemical Engineering Chengdu University of Technology 1 Dongsan Road, Erxianqiao Chengdu 610059 China
| | - Ze He
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection College of Materials Chemistry & Chemical Engineering Chengdu University of Technology 1 Dongsan Road, Erxianqiao Chengdu 610059 China
| | - Qingle Zeng
- State Key Laboratory of Geohazard Prevention and Geoenvironment Protection College of Materials Chemistry & Chemical Engineering Chengdu University of Technology 1 Dongsan Road, Erxianqiao Chengdu 610059 China
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Zhang G, Tan H, Chen W, Shen HC, Lu Y, Zheng C, Xu H. Synthesis of NH-Sulfoximines by Using Recyclable Hypervalent Iodine(III) Reagents under Aqueous Micellar Conditions. CHEMSUSCHEM 2020; 13:922-928. [PMID: 31950602 DOI: 10.1002/cssc.201903430] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Revised: 01/17/2020] [Indexed: 05/28/2023]
Abstract
The synthesis of NH-sulfoximines from sulfides has been first developed under mild conditions in an aqueous solution with surfactant TPGS-750-M as the catalyst at room temperature. In this newly developed process, a simple and convenient recycling strategy to regenerate the indispensable hypervalent iodine(III) is used. The resulting 1,2,3-trifluoro-5-iodobezene can be recovered almost quantitively from the mixture by liquid-liquid extraction and then oxidized to give the corresponding iodine(III) species. This optimized procedure is compatible with a broad range of functional groups and can be easily performed on a gram scale, providing a green protocol for the synthesis of sulfoximines.
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Affiliation(s)
- Guocai Zhang
- School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, P. R. China
- Roche Innovation Center Shanghai, Roche Pharma Research and Early Development, 720 Cai Lun Road, Shanghai, 201203, P. R. China
| | - Hongsheng Tan
- School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, P. R. China
| | - Weichun Chen
- Roche Innovation Center Shanghai, Roche Pharma Research and Early Development, 720 Cai Lun Road, Shanghai, 201203, P. R. China
| | - Hong C Shen
- Roche Innovation Center Shanghai, Roche Pharma Research and Early Development, 720 Cai Lun Road, Shanghai, 201203, P. R. China
| | - Yue Lu
- School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, P. R. China
| | - Changwu Zheng
- School of Pharmacy, Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, P. R. China
| | - Hongxi Xu
- Shuguang Hospital affiliated to Shanghai University of Traditional Chinese Medicine, Shanghai, 201203, P. R. China
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8
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Schumacher C, Fergen H, Puttreddy R, Truong KN, Rinesch T, Rissanen K, Bolm C. N-(2,3,5,6-Tetrafluoropyridyl)sulfoximines: synthesis, X-ray crystallography, and halogen bonding. Org Chem Front 2020. [DOI: 10.1039/d0qo01139h] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
N-(Tetrafluoropyridyl)sulfoximines are obtained from NH-sulfoximines and pentafluoropyridine under solution-based or mechanochemical conditions, and the solid-state structures of 26 products have been determined by X-ray diffraction analysis.
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Affiliation(s)
| | - Hannah Fergen
- Institute of Organic Chemistry
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Rakesh Puttreddy
- Institute of Organic Chemistry
- RWTH Aachen University
- 52074 Aachen
- Germany
- University of Jyvaskyla
| | - Khai-Nghi Truong
- University of Jyvaskyla
- Department of Chemistry
- FI-40014 Jyväskylä
- Finland
| | - Torsten Rinesch
- Institute of Organic Chemistry
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Kari Rissanen
- University of Jyvaskyla
- Department of Chemistry
- FI-40014 Jyväskylä
- Finland
| | - Carsten Bolm
- Institute of Organic Chemistry
- RWTH Aachen University
- 52074 Aachen
- Germany
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