1
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Mir MH, Parmar S, Singh C, Kalia D. Location-agnostic site-specific protein bioconjugation via Baylis Hillman adducts. Nat Commun 2024; 15:859. [PMID: 38286847 PMCID: PMC10825175 DOI: 10.1038/s41467-024-45124-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 01/15/2024] [Indexed: 01/31/2024] Open
Abstract
Proteins labelled site-specifically with small molecules are valuable assets for chemical biology and drug development. The unique reactivity profile of the 1,2-aminothiol moiety of N-terminal cysteines (N-Cys) of proteins renders it highly attractive for regioselective protein labelling. Herein, we report an ultrafast Z-selective reaction between isatin-derived Baylis Hillman adducts and 1,2-aminothiols to form a bis-heterocyclic scaffold, and employ it for stable protein bioconjugation under both in vitro and live-cell conditions. We refer to our protein bioconjugation technology as Baylis Hillman orchestrated protein aminothiol labelling (BHoPAL). Furthermore, we report a lipoic acid ligase-based technology for introducing the 1,2-aminothiol moiety at any desired site within proteins, rendering BHoPAL location-agnostic (not limited to N-Cys). By using this approach in tandem with BHoPAL, we generate dually labelled protein bioconjugates appended with different labels at two distinct specific sites on a single protein molecule. Taken together, the protein bioconjugation toolkit that we disclose herein will contribute towards the generation of both mono and multi-labelled protein-small molecule bioconjugates for applications as diverse as biophysical assays, cellular imaging, and the production of therapeutic protein-drug conjugates. In addition to protein bioconjugation, the bis-heterocyclic scaffold we report herein will find applications in synthetic and medicinal chemistry.
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Affiliation(s)
- Mudassir H Mir
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462066, Madhya Pradesh, India
| | - Sangeeta Parmar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462066, Madhya Pradesh, India
| | - Chhaya Singh
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462066, Madhya Pradesh, India
| | - Dimpy Kalia
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462066, Madhya Pradesh, India.
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2
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Lee S, Lee J, Kim JN. Synthesis of five‐ring‐fused azepinone derivatives from bis‐isatins via sequential 6π‐electrocyclic ring closure, ring expansion, and dehydrogenation process. B KOREAN CHEM SOC 2023. [DOI: 10.1002/bkcs.12672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Sangku Lee
- Anticancer Agent Research Center, KRIBB, Cheongju Chungbuk Republic of Korea
| | - Junseong Lee
- Department of Chemistry Chonnam National University Gwangju Republic of Korea
| | - Jae Nyoung Kim
- Department of Chemistry Chonnam National University Gwangju Republic of Korea
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3
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Liao J, Xu J, Wu Y, Hou Y, GUO H. 4‐(Dimethylamino)pyridine‐Catalyzed (3+2) Annulation of Pyrazoledione‐Derived Morita–Baylis–Hillman Carbonates with 2‐Arylideneindane‐1,3‐diones: An Access to Dispirocyclic Compounds. Adv Synth Catal 2022. [DOI: 10.1002/adsc.202101251] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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4
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Kim JN, Lee S. Synthesis of Spirooxindoles Bearing 1,
3‐Oxathiolane
‐2‐thione Moiety From
Isatin‐Derived
Propargylic Alcohols. B KOREAN CHEM SOC 2021. [DOI: 10.1002/bkcs.12206] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Jae Nyoung Kim
- Department of Chemistry Chonnam National University Gwangju 500‐757 Korea
| | - Sangku Lee
- Anticancer Agent Research Center KRIBB, Cheongwon 363‐883 Korea
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5
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Abstract
This review summaries recent synthetic developments towards spirocyclic oxindoles and applications as valuable medicinal and synthetic targets.
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Affiliation(s)
- Alexander J. Boddy
- Department of Chemistry
- Imperial College London
- Molecular Sciences Research Hub
- London W12 0BZ
- UK
| | - James A. Bull
- Department of Chemistry
- Imperial College London
- Molecular Sciences Research Hub
- London W12 0BZ
- UK
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6
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Chen GS, Fang YB, Ren Z, Tian X, Liu YL. Reaction condition-dependent divergent synthesis of spirooxindoles and bisoxindoles. Org Chem Front 2021. [DOI: 10.1039/d1qo00575h] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
DABCO-catalyzed divergent transformations of isatin-derived MBH carbonates leading to either spirocyclopentene oxindoles, spirocyclopentadiene 2-oxindoles or bisoxindoles are described.
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Affiliation(s)
- Guo-Shu Chen
- School of Chemistry and Chemical Engineering
- Guangzhou University
- Guangzhou
- China
| | - Yu-Bo Fang
- School of Chemistry and Chemical Engineering
- Guangzhou University
- Guangzhou
- China
| | - Zhi Ren
- College of Pharmacy
- Shenzhen Technology University
- Shenzhen
- China
| | - Xu Tian
- School of Pharmacy
- Guangzhou Medical University
- Guangzhou
- China
| | - Yun-Lin Liu
- School of Chemistry and Chemical Engineering
- Guangzhou University
- Guangzhou
- China
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7
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Moreno-Cabrerizo C, Ortega-Martínez A, Esteruelas MA, López AM, Nájera C, Sansano JM. Deacylative Alkylation vs. Photoredox Catalysis in the Synthesis of 3,3'-Bioxindoles. European J Org Chem 2020. [DOI: 10.1002/ejoc.202000375] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Cristina Moreno-Cabrerizo
- Department of Organic Chemistry; and Instituto de Síntesis Orgánica (ISO); University of Alicante; PO Box 99 03080 Alicante Spain
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
| | - Aitor Ortega-Martínez
- Department of Organic Chemistry; and Instituto de Síntesis Orgánica (ISO); University of Alicante; PO Box 99 03080 Alicante Spain
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
| | - Miguel A. Esteruelas
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
- Departamento de Química Inorgánica; Instituto de Síntesis Química y Catálisis Homogénea; Universidad de Zaragoza-CSIC; 50009 Zaragoza Spain
| | - Ana M. López
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
- Departamento de Química Inorgánica; Instituto de Síntesis Química y Catálisis Homogénea; Universidad de Zaragoza-CSIC; 50009 Zaragoza Spain
| | - Carmen Nájera
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
| | - José M. Sansano
- Department of Organic Chemistry; and Instituto de Síntesis Orgánica (ISO); University of Alicante; PO Box 99 03080 Alicante Spain
- Centro de Innovación en Química Avanzada; ORFEO-CINQA; Spain
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8
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Efficient biosynthesis of (R)-2-chloro-1-(2, 4-dichlorophenyl) ethanol using a mutant short-chain dehydrogenase from Novosphingobium aromaticivorans. Tetrahedron Lett 2020. [DOI: 10.1016/j.tetlet.2020.151914] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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9
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Paria S, Carletti E, Marcon M, Cherubini-Celli A, Mazzanti A, Rancan M, Dell'Amico L, Bonchio M, Companyó X. Light-Triggered Catalytic Asymmetric Allylic Benzylation with Photogenerated C-Nucleophiles. J Org Chem 2020; 85:4463-4474. [PMID: 32081000 PMCID: PMC7997570 DOI: 10.1021/acs.joc.0c00175] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
![]()
Herein
is reported the asymmetric allylic benzylation of Morita–Baylis–Hillman
(MBH) carbonates with 2-methylbenzophenone (MBP) derivatives as nonstabilized
photogenerated C-nucleophiles. The dual activation
of both reaction partners, chiral Lewis-base activation of the electrophile
and light activation of the nucleophile, enables the stereoselective
installation of benzyl groups at the allylic position to forge tertiary
and quaternary carbon centers.
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Affiliation(s)
- Suva Paria
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | - Edoardo Carletti
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | - Michela Marcon
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | | | - Andrea Mazzanti
- Department of Industrial Chemistry "Toso Montanari", University of Bologna, viale del Risorgimento 4, 40136 Bologna, Italy
| | - Marzio Rancan
- ICMATE-CNR, Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | - Luca Dell'Amico
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | - Marcella Bonchio
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
| | - Xavier Companyó
- Department of Chemical Sciences, University of Padova, via Marzolo 1, 35131 Padova, Italy
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10
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Chen Z, Chen Z, Du W, Chen Y. Transformations of Modified Morita‐Baylis‐Hillman Adducts from Isatins Catalyzed by Lewis Bases. CHEM REC 2019; 20:541-555. [PMID: 31609533 DOI: 10.1002/tcr.201900058] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Revised: 09/25/2019] [Indexed: 12/17/2022]
Affiliation(s)
- Zhi‐Chao Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology West China School of PharmacySichuan University Chengdu 610041 China
| | - Zhi Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology West China School of PharmacySichuan University Chengdu 610041 China
| | - Wei Du
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology West China School of PharmacySichuan University Chengdu 610041 China
| | - Ying‐Chun Chen
- Key Laboratory of Drug-Targeting and Drug Delivery System of the Ministry of Education and Sichuan Research Center for Drug Precision Industrial Technology West China School of PharmacySichuan University Chengdu 610041 China
- College of PharmacyThird Military Medical University Chongqing 400038 China
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11
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Sun Z, Xiang K, Tao H, Guo L, Li Y. Synthesis of 2-substituted 3-chlorobenzofurans via TMSCl-mediated nucleophilic annulation of isatin-derived propargylic alcohols. Org Biomol Chem 2018; 16:6133-6139. [PMID: 30101259 DOI: 10.1039/c8ob01731j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A TMSCl-mediated cascade annulation of isatin-derived propargylic alcohols for the synthesis of 2-substituted 3-chlorobenzofurans is now reported. Mechanistic investigations showed that this proceeded through a sequential Meyer-Schuster rearrangement/nucleophilic addition/intramolecular annulation. TMSCl not only acts as a promoter, but also acts as a chlorine source in this protocol.
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Affiliation(s)
- Zhou Sun
- State Key Laboratory of Applied Organic Chemistry & College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, P. R. of China.
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12
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Seo DY, Lee S, Min BK, Kim JN. Synthesis of Spirooxindoles Bearing Benzopyrano[2,3-b]indole Moiety by NBS-Mediated Oxidative Coupling Reaction. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11535] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Da Young Seo
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Sangku Lee
- Targeted Medicine Research Center; Korea Research Institute of Bioscience and Biotechnology; Cheongwon 363-883 Korea
| | - Beom Kyu Min
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Jae Nyoung Kim
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
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13
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Min BK, Kim G, Roh HJ, Seo DY, Kim JN. Synthesis of spirooxindoles bearing 2,3-(or 2,5-)dihydrothiophene-2-thione moiety via [3+2] annulation of carbon disulfide with Morita-Baylis-Hillman carbonates of isatins. Tetrahedron Lett 2018. [DOI: 10.1016/j.tetlet.2018.03.056] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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14
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Seo DY, Kim G, Jo HY, Kim JN. Synthesis of Cyclopentadiindolyl Spirooxindoles via Palladium-catalyzed Intramolecular Oxidative Indole-Indole Coupling Reaction. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11432] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Da Young Seo
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 South Korea
| | - Gieun Kim
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 South Korea
| | - Hwi Yul Jo
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 South Korea
| | - Jae Nyoung Kim
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 South Korea
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15
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Ganesh M, Rao MP. Part II: Diastereoselective Reactions Involving β-Mono- and β,β′-Disubstituted Alkylidene Oxindoles: Pondering Alkene Geometry. ASIAN J ORG CHEM 2017. [DOI: 10.1002/ajoc.201700593] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Madhu Ganesh
- Department of Chemistry; B.M.S. College of Engineering, P.O. Box 1908; Bull Temple Road Bengaluru 560019 India
| | - Madhuri P. Rao
- Department of Chemistry; B.M.S. College of Engineering, P.O. Box 1908; Bull Temple Road Bengaluru 560019 India
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16
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Min BK, Seo DY, Ryu JY, Lee J, Kim JN. Synthesis of Spirocyclohexadieneyl-2-Oxindoles by 6π-Electrocyclization of Trienes Derived from Wittig Reaction of Morita-Baylis-Hillman Carbonates and α,β-Unsaturated Aldehydes. B KOREAN CHEM SOC 2017. [DOI: 10.1002/bkcs.11333] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Beom Kyu Min
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Da Young Seo
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Ji Yeon Ryu
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Junseong Lee
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Jae Nyoung Kim
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
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17
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Seo DY, Roh HJ, Min BK, Kim JN. Facile Synthesis of Isoindigo Derivatives from 3-Indolyl-2-Oxindoles with DDQ. B KOREAN CHEM SOC 2017. [DOI: 10.1002/bkcs.11317] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Da Young Seo
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Hwa Jung Roh
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Beom Kyu Min
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
| | - Jae Nyoung Kim
- Department of Chemistry and Institute of Basic Science; Chonnam National University; Gwangju 500-757 Korea
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18
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Synthesis of spiroindenyl-2-oxindoles by montmorillonite K-10-catalyzed tandem Friedel-Crafts alkenylation/hydroarylation of propargylic alcohols with sterically hindered and electron-rich arenes. Tetrahedron Lett 2017. [DOI: 10.1016/j.tetlet.2017.09.035] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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