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Abdeldjebar H, Belmiloud Y, Djitli W, Achour S, Brahimi M, Tangour B. Proton transfer in the benzimidazolone and benzimidazolthione tautomerism process catalyzed by polar protic solvents. PROGRESS IN REACTION KINETICS AND MECHANISM 2019. [DOI: 10.1177/1468678319825740] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
The tautomeric equilibrium of benzimidazolone and benzimidazolthione have been studied by the density functional theory method using the CAM-B3LYP functional together with the 6-311G(d,p) basis set. Two separate mechanisms have been investigated: a direct intramolecular transfer using the polarizable continuum model and an indirect proton transfer assisted by a molecule of solvent (C6H12, H2O, CH3OH, and H2O2). In both cases, the results obtained indicate that ketone and thione are the most stable forms. However, the enhanced height of the activation barrier for the four-center mechanisms describing the tautomerism reaction as a direct intramolecular transfer implicates a relatively disadvantaged process. The participation of a polar protic solvent molecule allows the lowering of the activation energy barrier. Potential energy profiles of keto-enol and thio-enol tautomerism assisted by methanol and water are very different. The former one describes a concerted mechanism but the latter does not because it is associated with asynchronous processes that take place during the thio-enol tautomerism.
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Affiliation(s)
- Hasnia Abdeldjebar
- Laboratoire de Physico-Chimie Théorique et de Chimie Informatique, Faculté de Chimie, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Yamina Belmiloud
- Laboratoire de Physico-Chimie Théorique et de Chimie Informatique, Faculté de Chimie, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Wassila Djitli
- Laboratoire de Physico-Chimie Théorique et de Chimie Informatique, Faculté de Chimie, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Sofien Achour
- Research Unit of Modelisation on Fundamental Sciences and Didactics, IPEIEM, Université de Tunis El Manar, Tunis, Tunisia
| | - Meziane Brahimi
- Laboratoire de Physico-Chimie Théorique et de Chimie Informatique, Faculté de Chimie, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
| | - Bahoueddine Tangour
- Laboratoire de Physico-Chimie Théorique et de Chimie Informatique, Faculté de Chimie, Université des Sciences et de la Technologie Houari Boumediene, Alger, Algeria
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Micheletti G, Boga C, Forlani L, Del Vecchio E, Zanna N, Mazzanti A, Monari M. Hydroxy- and Methoxybenzene Derivatives with Benzenediazonium Salts ― Chemical Behavior and Tautomeric Problems. European J Org Chem 2017. [DOI: 10.1002/ejoc.201601393] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Gabriele Micheletti
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Carla Boga
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Luciano Forlani
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Erminia Del Vecchio
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Nicola Zanna
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Andrea Mazzanti
- Department of Industrial Chemistry “Toso Montanari”; ALMA MATER STUDIORUM - Università di Bologna; Viale del Risorgimento 4 40136 Bologna Italy
| | - Magda Monari
- Department of Chemistry “G. Ciamician”; ALMA MATER STUDIORUM - Università di Bologna; Via Selmi, 2 40125 Bologna Italy
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Iglesias DA, Ruiz DL, Allegretti PE. 2-Cyanobenzoic Acids: Tautomeric Equilibria Study. Aust J Chem 2015. [DOI: 10.1071/ch14273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Evidence of ring–chain tautomerism in the gas phase from mass spectrometry and in solution determined by means of 1H NMR and 13C NMR is reported for 2-cyanobenzoic acids. The analysis of the corresponding spectra has allowed specific assignment of fragment ions to tautomers. The predictive value of this methodology is supported by the influence of the substitution pattern of these compounds on this equilibrium.
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JIMÉNEZ-PULIDO SONIAB, ILLÁN-CABEZA NURIAA, HUESO-UREÑA FRANCISCO, MORENO-CARRETERO MIGUELN. TAUTOMERISM IN NEUTRAL AND DEPROTONATED 6-AMINO-5-FORMYLURACILS: A PM3-COSMO APPROACH. JOURNAL OF THEORETICAL & COMPUTATIONAL CHEMISTRY 2013. [DOI: 10.1142/s0219633613500326] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In order to identify the structure of the most stable tautomers of 6-amino-5-formyluracil and its N-methylated derivatives in different pH conditions, relative stabilities of potential tautomers in aqueous phase have been calculated taking into account the entropy effects over the tautomeric equilibria. In each medium, the tautomer with lower energy must be the most representative form at the corresponding pH and the knowledge of the effect of the medium in the tautomerization energies allows evaluating the possible effect of the medium over the molecular stability. The results show that, in aqueous phase, the order of basicity of protonation sites in the 6-amino-5-formyluracil derivatives is N 9 > ( N 3 > N 1) > ( O 8 > O 4 > O 2). The 6-amino-5-formyluracil derivatives act as an amino-formyl-keto tautomer with a strong imino character, although, upon successive deprotonations, a growing contribution of enolyzed forms which explain the increasing labilization of carbonyl bonds must be pointed out.
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Affiliation(s)
| | - NURIA A. ILLÁN-CABEZA
- Department of Inorganic and Organic Chemistry, University of Jaén, 23071-Jaén, Spain
| | - FRANCISCO HUESO-UREÑA
- Department of Inorganic and Organic Chemistry, University of Jaén, 23071-Jaén, Spain
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Shabanian M, Hajibeygi M, Moghanian H, Mohamadi A. Theoretical investigation on tautomerism and NBO analysis of 3-hydroxy-1,2,5-thiadiazole derivatives: solvent and substituent effects. HETEROCYCL COMMUN 2012. [DOI: 10.1515/hc-2011-0121] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
AbstractThiadiazole compounds including 3-hydroxy-4-substituted-1,2,5-thiadiazole are known as non-nucleoside inhibitors of HIV-1. Density functional calculations at the B3LYP/6-311++G(d,p) level were employed to determine the stability, tautomerism, and substituent effects of 1,2,5-thiadiazole, a widely used skin-whitening, antibrowning, and antibacterial agent, and its derivatives (4-NO
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Tavakol H. Tautomerism, dynamic properties and level crossing in 2-(pyridin-2-yl) furan-3-ol by density functional theory and natural bond orbital analysis. J PHYS ORG CHEM 2011. [DOI: 10.1002/poc.1939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Hossein Tavakol
- Department of Chemistry; Isfahan University of Technology; Isfahan 84156-83111 Iran
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Theoretical investigations on the structure and relative stabilities of the tautomeric forms of 6-amino-5-nitrosouracil and violuric acid derivatives (PM3-COSMO calculation). COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.12.006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Tavakol H, Sabzyan H. Possibility of non-adiabatic level crossing by DFT study of tautomerism and potential energy surfaces in of 3-hydroxy-5-(pyrimidin-2-yl)-2H
-pyrrol-2-one and its tautomer. J PHYS ORG CHEM 2010. [DOI: 10.1002/poc.1771] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Dudinov AA, Komogortsev AN, Lichitsky BV, Krayushkin MM. Three-Component Condensation of 2,4-Diaminoselenazole with Aldehydes and Meldrum’s Acid: Synthesis of 7-Aryl(alkyl)-Substituted 2-Amino-6,7-dihydro-4H-selenazolo[4,5-b]pyridin-5-ones. PHOSPHORUS SULFUR 2010. [DOI: 10.1080/10426501003773753] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Affiliation(s)
- Arkady A. Dudinov
- a N. D. Zelinsky Institute of Organic Chemistry , Russian Academy of Sciences , Moscow, Russian Federation
| | - Andrey N. Komogortsev
- a N. D. Zelinsky Institute of Organic Chemistry , Russian Academy of Sciences , Moscow, Russian Federation
| | - Boris V. Lichitsky
- a N. D. Zelinsky Institute of Organic Chemistry , Russian Academy of Sciences , Moscow, Russian Federation
| | - Mikhail M. Krayushkin
- a N. D. Zelinsky Institute of Organic Chemistry , Russian Academy of Sciences , Moscow, Russian Federation
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Amar A, Meghezzi H, Boucekkine A, Kaoua R, Kolli B. How to drive imine–enamine tautomerism of pyronic derivatives of biological interest – A theoretical and experimental study of substituent and solvent effects. CR CHIM 2010. [DOI: 10.1016/j.crci.2009.11.009] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Three-component condensation of 2,4-diaminothiazoles with aldehydes and Meldrum’s acid. The synthesis of 7-aryl- and 7-alkyl-6,7-dihydro-4H-thiazolo[4,5-b]pyridin-5-ones. Russ Chem Bull 2009. [DOI: 10.1007/s11172-008-0230-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Zahedi E, Aghaie M, Zare K, Aghaie H. Solvent effects on stability and 15N NMR shielding of 5-methylcytosine tautomers: A theoretical approach. ACTA ACUST UNITED AC 2009. [DOI: 10.1016/j.theochem.2008.12.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Mohamed AA, El-Harby AW. Amino–imino tautomerism of mono- and diaminothiazoles: Quantum chemical study. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.theochem.2007.04.024] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Enchev V, Markova N, Angelova S. Ab initio study of 2,4-substituted azolidines. II. Amino-imino tautomerism of 2-aminothiazolidine-4-one and 4-aminothiazolidine-2-one in water solution. J Phys Chem A 2007; 109:8904-13. [PMID: 16834294 DOI: 10.1021/jp052560w] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The relative stabilities of the tautomers of 2-aminothiazolidine-4-one and 4-aminothiazolidine-2-one were calculated at the MP2/6-31+G(d,p) level by considering their mono- and trihydrated complexes. Single-point calculations at the MP4/6-31+G(d,p)//MP2/6-31+G(d,p) level of theory were performed to obtain more accurate energies. The values of proton transfer barriers in the isolated, mono- and trihydrated tautomers of 2-aminothiazolidine-4-one (2AT) and 4-aminothiazolidine-2-one (4AT) were calculated for two different mechanisms of tautomerisation. In the absence of water, the process of proton transfer should not occur. Addition of water molecules decreases the barrier making the process faster, as the participation of two water molecules in a proton transfer reaction is more favorable than the participation of only one water molecule. To estimate the effect of the medium (water) on the relative stabilities of the tautomers of the studied compounds we applied the polarizable continuum model (PCM). (13)C NMR chemical shieldings were calculated using the GIAO approach at MP2/6-31+G(d,p) optimized geometries. HF and the DFT B3LYP functional with 6-31+G(d,p) basis set were employed. The quantum chemical results for the chemical shifts in gas phase and in polar solvents (water and DMSO) were compared with experimental data. TD DFT B3LYP/aug-cc-pVTZ calculations were performed to predict the absorption maxima of tautomers A and B of 2AT and 4AT.
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Affiliation(s)
- Venelin Enchev
- Institute of Organic Chemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria.
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