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Xu S, Liu F, Xu J, Cui Y, Wang C. Theoretical investigation on bond and spectrum of cyclo[18] carbon (C 18) with sp-hybridized. J Mol Model 2020; 26:111. [PMID: 32350698 DOI: 10.1007/s00894-020-4344-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 03/05/2020] [Indexed: 10/24/2022]
Abstract
In an experiment, cyclo[18]carbon (C18), prepared with low-temperature STM-AFM (scanning tunneling microscopy-atomic force microscopy) from C24O6, C22O4, and C20O2 molecules, have been confirmed being alternating single and triple bonds structure. Nevertheless, the stability of C18 is weak at room temperature in gas. Thus, it is difficult to study the spectrum, orbital, and bonds characters of the C18 molecule in the experiment. In this paper, we have obtained absorption spectrum, orbital, and bonding characters of the C18 molecule in theory. Besides, bonds and spectra of C24O6, C22O4, C20O2, B9N9, C6, C12, C16, and C20 molecules have been investigated to further confirm the structure and the characters of the C18 molecule. The results show that carbon-carbon bonds of C24O6, C22O4, and C20O2 molecules in ring are alternating single and triple bonds except those connected with CO group. B9N9 molecule as the isoelectronic structure of C18 has a larger bandgap and shorter wavelength of absorption spectra than those of the C18 molecule. Moreover, all bonds between boron and nitrogen in B9N9 molecule are single one. Study bonding characters for C6, C12, C16, and C20 molecules have confirmed that carbon-carbon bonds of cyclo[n]carbon changed gradually from double bonds to alternating single and triple bonds with increasing n value. The data from theory would give help for future research on C18 and B9N9 molecules in experiment. Graphical abstract Theoretical investigation for bond and spectra characters of cyclo[18]carbon (C18), prepared with low-temperature STM-AFM (scanning tunneling microscopy-atomic force microscopy) from C24O6, C22O4, and C20O2 molecules, which have been confirmed being alternating single and triple bonds structure.
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Affiliation(s)
- Shuhong Xu
- Advanced Photonics Center, School of Electronic Science and Engineering, Southeast University, Nanjing, 210096, Jiangsu, China
| | - Fan Liu
- Advanced Photonics Center, School of Electronic Science and Engineering, Southeast University, Nanjing, 210096, Jiangsu, China
| | - Jingkun Xu
- Advanced Photonics Center, School of Electronic Science and Engineering, Southeast University, Nanjing, 210096, Jiangsu, China
| | - Yiping Cui
- Advanced Photonics Center, School of Electronic Science and Engineering, Southeast University, Nanjing, 210096, Jiangsu, China
| | - Chunlei Wang
- Advanced Photonics Center, School of Electronic Science and Engineering, Southeast University, Nanjing, 210096, Jiangsu, China.
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Alver Ö, Parlak C, Ramasami P. MC19 (M = B, Si, Al and Ga) fullerenes: Adsorption mechanisms of 1,4-diformylpiperazine. ADSORPT SCI TECHNOL 2018. [DOI: 10.1177/0263617417722922] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Fullerenes and piperazines have been investigated, particularly, in the field of nanoscience and medicinal chemistry. In the present research, besides discussing structural and electronic properties, the most probable interaction mechanisms between C20, B-, Si-, Al-, Ga-doped C20 and 1,4-diformylpiperazine (1,4-dfp) were studied by employing density functional theory (DFT) in both the gas phase and water as the solvent. Stabilities of the investigated complexes were discussed based on the binding energy and electronic properties such as band gap energy, chemical hardness and electrophilicity index. It is found that doped complexes are more stabilized in water compared to the gas phase. However, the interaction between C20 and 1,4-dfp weakens upon the introduction of water as the solvent.
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Affiliation(s)
- Özgür Alver
- Department of Physics, Science Faculty, Anadolu University, Eskisehir, Turkey
| | - Cemal Parlak
- Department of Physics, Science Faculty, Ege University, Izmir, Turkey
| | - Ponnadurai Ramasami
- Computational Chemistry Group, Department of Chemistry, Faculty of Science, University of Mauritius, Réduit, Mauritius; Department of Chemistry, College of Science, Engineering and Technology, University of South Africa, Pretoria, South Africa
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Krzeszewski M, Kodama T, Espinoza EM, Vullev VI, Kubo T, Gryko DT. Nonplanar Butterfly-Shaped π-Expanded Pyrrolopyrroles. Chemistry 2016; 22:16478-16488. [PMID: 27659591 DOI: 10.1002/chem.201603282] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2016] [Indexed: 12/11/2022]
Abstract
Large aza-analogues of curved polycyclic aromatic hydrocarbons with a double-helicene structure present unique features for molecular photonics. We present the preparation and characterization of three such structures. The synthesis of these heterocyclic nanographenes involves only a few high-yield steps that use readily available starting materials. X-ray analysis revealed that each of these new dyes has three conformational isomers: one diastereoisomer in a meso form and two enantiomers in twisted forms [(P,P)] and [(M,M)]. The low energy barriers between the conformers, however, prevent their separation by using chiral HPLC, and the NMR spectra show only one set of signals for each of these curved compounds. Density functional theory (DFT) calculations quantify the small energy difference and the small energy barriers between the chiral and meso forms, which fully supports the experimental results. Their optical absorption lacks any sensitivity to the solvent environment, whereas their fluorescence features exhibit pronounced solvatochromism. This rarely observed solvatofluorochromism of centrosymmetric molecules without either electron-withdrawing groups or -donating substituents was probed by using time-resolved spectroscopy. These studies suggest that, similar to 9,9'-bianthryl, the nonpolar locally excited state shows negligible solvatochromism, whereas the charge-transfer state is sensitive to solvent polarity.
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Affiliation(s)
- Maciej Krzeszewski
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44-52, 01-224, Warsaw, Poland.,Department of Bioengineering, Department of Biochemistry, Department of Chemistry, and Materials Science and Engineering Program, University of California, Riverside, California, 92521, USA
| | - Takuya Kodama
- Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan
| | - Eli M Espinoza
- Department of Bioengineering, Department of Biochemistry, Department of Chemistry, and Materials Science and Engineering Program, University of California, Riverside, California, 92521, USA
| | - Valentine I Vullev
- Department of Bioengineering, Department of Biochemistry, Department of Chemistry, and Materials Science and Engineering Program, University of California, Riverside, California, 92521, USA.
| | - Takashi Kubo
- Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan.
| | - Daniel T Gryko
- Institute of Organic Chemistry, Polish Academy of Sciences, Kasprzaka 44-52, 01-224, Warsaw, Poland.
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Lathiotakis NN, Helbig N, Rubio A, Gidopoulos NI. Quasi-particle energy spectra in local reduced density matrix functional theory. J Chem Phys 2014; 141:164120. [DOI: 10.1063/1.4899072] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Nektarios N. Lathiotakis
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, Vass. Constantinou 48, GR-11635 Athens, Greece
| | - Nicole Helbig
- Peter-Grünberg Institut and Institute for Advanced Simulation, Forschungszentrum Jülich, D-52425 Jülich, Germany
| | - Angel Rubio
- Nano-Bio Spectroscopy Group and ETSF Scientific Development Centre, Dpto. Física de Materiales, Universidad del País Vasco, CFM CSIC-UPV/EHU-MPC and DIPC, Av. Tolosa 72, E-20018 San Sebastián, Spain
| | - Nikitas I. Gidopoulos
- Department of Physics, Durham University, South Road, Durham DH1 3LE, United Kingdom
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Xu S, Wang C, Cui Y. Contrast of Bonding and Characters for C6, B3N3, C6H6 and B3N3H6 Molecules. CHINESE J CHEM 2010. [DOI: 10.1002/cjoc.201090139] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Eisenberg D, Filatov AS, Jackson EA, Rabinovitz M, Petrukhina MA, Scott LT, Shenhar R. Bicorannulenyl: Stereochemistry of a C40H18 Biaryl Composed of Two Chiral Bowls. J Org Chem 2008; 73:6073-8. [DOI: 10.1021/jo800359z] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- David Eisenberg
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Alexander S. Filatov
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Edward A. Jackson
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Mordecai Rabinovitz
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Marina A. Petrukhina
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Lawrence T. Scott
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
| | - Roy Shenhar
- Institute of Chemistry and The Lise Meitner-Minerva Center for Computational Quantum Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel, Department of Chemistry, State University of New York, Albany, New York 12222, and Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, Massachusetts 02467-3860
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Chen JL, Kerim A. Aromaticity of Heterofullerenes C 18B xN y ( x + y = 2) and Their Molecular Ions. CHINESE J CHEM PHYS 2008. [DOI: 10.1088/1674-0068/21/02/118-122] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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