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Hayashi S, Sugibayashi Y, Nakanishi W. Behavior of interactions between hydrogen chalcogenides and an anthracene π-system elucidated by QTAIM dual functional analysis with QC calculations. RSC Adv 2017. [DOI: 10.1039/c7ra04224h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The nature of the interactions between chalcogenides and the anthracene p-system, EH2-*-p(C14H10), is predicted to be close to that of EH2-*-p(C10H8), although the partial structures around the central rings can be found in EH2-*-p(C6H6).
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Affiliation(s)
- Satoko Hayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Yuji Sugibayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Waro Nakanishi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
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2
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Grimme S, Hansen A, Brandenburg JG, Bannwarth C. Dispersion-Corrected Mean-Field Electronic Structure Methods. Chem Rev 2016; 116:5105-54. [DOI: 10.1021/acs.chemrev.5b00533] [Citation(s) in RCA: 799] [Impact Index Per Article: 99.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Stefan Grimme
- Mulliken Center for Theoretical
Chemistry, Universität Bonn, 53113 Bonn, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical
Chemistry, Universität Bonn, 53113 Bonn, Germany
| | | | - Christoph Bannwarth
- Mulliken Center for Theoretical
Chemistry, Universität Bonn, 53113 Bonn, Germany
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3
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Hayashi S, Sugibayashi Y, Nakanishi W. Quantum chemical calculations with the AIM approach applied to the π-interactions between hydrogen chalcogenides and naphthalene. RSC Adv 2016. [DOI: 10.1039/c6ra04738f] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Abstract
The nature of π-interactions in (EH2)n–*–π(C10H8) (n = 1 and 2: E = O, S, Se and Te) is elucidated with QTAIM-DFA. They have the character of the vdW-nature of the pure-CS interactions, except for HHTe–*–π(C10H8), which seems stronger than others.
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Affiliation(s)
- Satoko Hayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Yuji Sugibayashi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
| | - Waro Nakanishi
- Department of Material Science and Chemistry
- Faculty of Systems Engineering
- Wakayama University
- Wakayama
- 640-8510 Japan
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4
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Heinemann T, Palczynski K, Dzubiella J, Klapp SHL. Coarse-grained electrostatic interactions of coronene: Towards the crystalline phase. J Chem Phys 2015; 143:174110. [DOI: 10.1063/1.4935063] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Affiliation(s)
- Thomas Heinemann
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
| | - Karol Palczynski
- Institut für Physik, Humboldt Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
- Institut für Weiche Materie und Funktionale Materialen, Helmholtz-Zentrum Berlin für Materialien und Energie, Hahn-Meitner Platz 1, 14109 Berlin, Germany
| | - Joachim Dzubiella
- Institut für Physik, Humboldt Universität zu Berlin, Newtonstraße 15, 12489 Berlin, Germany
- Institut für Weiche Materie und Funktionale Materialen, Helmholtz-Zentrum Berlin für Materialien und Energie, Hahn-Meitner Platz 1, 14109 Berlin, Germany
| | - Sabine H. L. Klapp
- Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstr. 36, 10623 Berlin, Germany
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5
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Yilmazer ND, Korth M. Enhanced semiempirical QM methods for biomolecular interactions. Comput Struct Biotechnol J 2015; 13:169-75. [PMID: 25848495 PMCID: PMC4372622 DOI: 10.1016/j.csbj.2015.02.004] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2015] [Revised: 02/17/2015] [Accepted: 02/19/2015] [Indexed: 12/21/2022] Open
Abstract
Recent successes and failures of the application of 'enhanced' semiempirical QM (SQM) methods are reviewed in the light of the benefits and backdraws of adding dispersion (D) and hydrogen-bond (H) correction terms. We find that the accuracy of SQM-DH methods for non-covalent interactions is very often reported to be comparable to dispersion-corrected density functional theory (DFT-D), while computation times are about three orders of magnitude lower. SQM-DH methods thus open up a possibility to simulate realistically large model systems for problems both in life and materials science with comparably high accuracy.
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Affiliation(s)
| | - Martin Korth
- Institute of Theoretical Chemistry, Ulm University, D-89069 Ulm, Germany
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6
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Garcia-Fernandez C, Picaud S, Rayez MT, Rayez JC, Rubayo-Soneira J. First-Principles Study of the Interaction between NO and Large Carbonaceous Clusters Modeling the Soot Surface. J Phys Chem A 2014; 118:1443-50. [DOI: 10.1021/jp412217q] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- C. Garcia-Fernandez
- Institut UTINAM—UMR 6213, CNRS/Université de Franche-Comté, 16 Route de Gray F-25030 Besançon Cedex, France
- Instituto
Superior de Tecnologias y Ciencias Aplicadas (InSTEC), Ave. Salvador Allende y Luaces, Quinta de los Molinos Plaza, Habana 10600, Cuba
| | - S. Picaud
- Institut UTINAM—UMR 6213, CNRS/Université de Franche-Comté, 16 Route de Gray F-25030 Besançon Cedex, France
| | - M. T. Rayez
- Institut des Sciences Moléculaires − UMR 5255/CNRS, Université de Bordeaux I, 351 cours
de la Libération, F-33405 Talence Cedex, France
| | - J. C. Rayez
- Institut des Sciences Moléculaires − UMR 5255/CNRS, Université de Bordeaux I, 351 cours
de la Libération, F-33405 Talence Cedex, France
| | - J. Rubayo-Soneira
- Instituto
Superior de Tecnologias y Ciencias Aplicadas (InSTEC), Ave. Salvador Allende y Luaces, Quinta de los Molinos Plaza, Habana 10600, Cuba
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7
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Scott AM, Gorb L, Mobley EA, Hill FC, Leszczynski J. Predictions of Gibbs free energies for the adsorption of polyaromatic and nitroaromatic environmental contaminants on carbonaceous materials: efficient computational approach. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2012; 28:13307-13317. [PMID: 22909085 DOI: 10.1021/la3027286] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
The adsorption of benzene, polycyclic aromatic hydrocarbons (PAHs), and nitroaromatic compounds (NACs) on the carbonaceous surfaces from the gas phase and water solution was investigated. Several different levels of theory were applied, including DFT-, MP2-, and CCSD(T)-based methods, to find an approach that is computationally inexpensive and can provide accurate thermodynamic parameters for studied adsorption phenomena. The methods and techniques used (including cluster and periodic approximations) were evaluated on the basis of comparison with available experimental data. The optimized structures of calculated complexes are obtained, and the interaction energies and Gibbs free energies are predicted. Good agreement was revealed for the theoretical and experimental adsorption energies of benzene and PAHs adsorbed on the carbon surfaces. The adsorption of benzene, PAHs, and NACs on carbon is suggested to be effective from the gas phase for all studied compounds and for PAHs and NACs also from water solution at room temperature.
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Affiliation(s)
- A M Scott
- U.S. Army Engineer Research and Development Center, 3909 Halls Ferry Road, Vicksburg, Mississippi 39180, USA
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Oubal M, Hantal G, Picaud S, Hoang P, Liotard D, Rayez M, Rayez J, Villenave E. A new semi-empirical model for the oxidation of polycyclic aromatic hydrocarbon (PAHs) molecules physisorbed on soot. II. Application to the reaction PAH+OH for a series of large PAH molecules. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2010.10.048] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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9
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Hantal G, Picaud S, Collignon B, Hoang P, Rayez M, Rayez J. A new semi-empirical model for the oxidation of PAHs physisorbed on soot. I. Application to the reaction C6H6+OH. MOLECULAR SIMULATION 2009. [DOI: 10.1080/08927020902874016] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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10
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Rochefort A, Wuest JD. Interaction of substituted aromatic compounds with graphene. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2009; 25:210-215. [PMID: 19053626 DOI: 10.1021/la802284j] [Citation(s) in RCA: 111] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
We have modeled the adsorption of various substituted derivatives of benzene on a graphene sheet, using a first-principles density functional theory-local density approximation method. The presence of functional groups can significantly alter the overall magnitude of pi-pi interactions between the adsorbed molecules and graphene by giving rise to strong medium-range interactions involving pi-orbitals of the substituents. When the substituents can simultaneously permit the formation of hydrogen bonds between adsorbed molecules, it is possible to evaluate the relative contributions of hydrogen bonding and pi-based interactions to the overall adsorption. Adsorption of individual molecules and hydrogen-bonded aggregates reflects a hierarchical balance of the different interactions that determine the overall energy of adsorption.
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Affiliation(s)
- Alain Rochefort
- Departement de genie physique and Regroupement quebecois sur les materiaux de pointe (RQMP), Ecole Polytechnique de Montreal, Montreal, Quebec H3C 3A7, Canada
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11
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Cabaleiro-Lago EM, Rodríguez-Otero J, Peña-Gallego Á. Computational Study on the Characteristics of the Interaction in Naphthalene···(H2X)n=1,2 (X = O, S) Clusters. J Phys Chem A 2008; 112:6344-50. [DOI: 10.1021/jp8021979] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Enrique M. Cabaleiro-Lago
- Departamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus de Lugo, Avda. Alfonso X El Sabio s/n 27002 Lugo, Galicia, Spain, and Departamento de Química Física, Facultade de Química, Universidade de Santiago de Compostela, Avda. das Ciencias, s/n 15706 Santiago de Compostela, Galicia, Spain
| | - Jesús Rodríguez-Otero
- Departamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus de Lugo, Avda. Alfonso X El Sabio s/n 27002 Lugo, Galicia, Spain, and Departamento de Química Física, Facultade de Química, Universidade de Santiago de Compostela, Avda. das Ciencias, s/n 15706 Santiago de Compostela, Galicia, Spain
| | - Ángeles Peña-Gallego
- Departamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus de Lugo, Avda. Alfonso X El Sabio s/n 27002 Lugo, Galicia, Spain, and Departamento de Química Física, Facultade de Química, Universidade de Santiago de Compostela, Avda. das Ciencias, s/n 15706 Santiago de Compostela, Galicia, Spain
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