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Gill WA, Alhokbany N, Janjua MRSA. Adsorption of molecular hydrogen on Be 3Al 2(SiO 3) 6-beryl: theoretical insights for catalysis, hydrogen storage, gas separation, sensing, and environmental applications. RSC Adv 2024; 14:3782-3789. [PMID: 38274172 PMCID: PMC10809057 DOI: 10.1039/d3ra07480c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 01/12/2024] [Indexed: 01/27/2024] Open
Abstract
Employing a combination of Density Functional Theory (DFT) calculations and Molecular Dynamics (MD) simulations, the adsorption of molecular hydrogen (H2) on Be3Al2(SiO3)6-beryl, a prominent silicate mineral, has been studied. The crystal structure of beryl, which consists of interconnected tetrahedral and octahedral sites, provides a fascinating framework for comprehending H2 adsorption behavior. Initial investigation of the interaction between H2 molecules and the beryl surface employed DFT calculations. We identified favorable adsorption sites and gained insight into the binding mechanism through extensive structural optimizations and energy calculations. H2 molecules preferentially adsorb on the exposed oxygen atoms surrounding the octahedral sites, producing weak van der Waals interactions with the beryl surface, according to our findings. To further investigate the dynamic aspects of H2 adsorption, MD simulations employing a suitable force field were conducted. To precisely represent interatomic interactions within the Be3Al2(SiO3)6-beryl-H2 system, the force field parameters were meticulously parameterized. By subjecting the system to a variety of temperatures, we were able to obtain valuable information about the stability, diffusion, and desorption kinetics of H2 molecules within the beryl structure. The comprehensive understanding of the H2 adsorption phenomenon on Be3Al2(SiO3)6-beryl is provided by the combined DFT and MD investigations. The results elucidate the mechanisms underlying H2 binding, highlighting the role of surface oxygen atoms and the effect of temperature on H2 dynamics. This research contributes to a fundamental understanding of hydrogen storage and release in beryllium-based silicates and provides valuable guidance for the design and optimization of materials for hydrogen storage, catalysis, gas separation, sensing and environmental applications.
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Affiliation(s)
- Waqas Amber Gill
- Departamento de Química Física, Universidad de Valencia Avda Dr Moliner, 50, E-46100 Burjassot Valencia Spain
| | - Norah Alhokbany
- Department of Chemistry, King Saud University Riyadh 11451 Saudi Arabia
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Gill WA, Aziz MT, Darwish HW, Janjua MRSA. Exploring HCl-HCl interactions: QZVPP calculations, improved Lennard-Jones potential, and second virial coefficient analysis for thermodynamics and industrial applications. RSC Adv 2024; 14:1890-1901. [PMID: 38192328 PMCID: PMC10772863 DOI: 10.1039/d3ra04387h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 12/13/2023] [Indexed: 01/10/2024] Open
Abstract
In this paper, we present a comprehensive analysis of HCl-HCl interactions, including QZVPP calculations, energy fitting, conformation validation, and the determination of the second virial coefficient B using improved Lennard-Jones (ILJ) potential parameters. To acquire accurate interaction energies, initial QZVPP calculations are performed on approximately 1851 randomly generated HCl-HCl conformations. Then, these energies are used to fit an improved Lennard-Jones potential energy surface, allowing for a robust description of HCl-HCl interactions. The ILJ potential parameters are then used to validate particular HCl dimer conformations, ensuring their stability and consistency with experimental observations. The correlation between calculated and experimental conformations strengthens the validity of the ILJ potential parameters. In addition, the second viral coefficient B is calculated at various temperatures using the ILJ potential. The obtained B values are compared to experimental data, demonstrating close agreement, and validating the ILJ potential's ability to accurately capture the intermolecular interactions and gas-phase behavior of the HCl-HCl system. The results of this study demonstrate the effective implementation of QZVPP calculations, energy fitting, and ILJ potential parameters in validating HCl-HCl conformations and accurately determining the second virial coefficient B. The high degree of concordance between calculated B values and experimental data demonstrates the validity of the ILJ potential and its suitability for modeling HCl-HCl interactions. This research contributes to a greater comprehension of HCl-HCl interactions and their implications for numerous chemical and atmospheric processes. The validated conformations, energy fitting method, and calculated second virial coefficients provide valuable instruments for future research and pave the way for more accurate modeling and simulations of HCl-HCl systems.
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Affiliation(s)
- Waqas Amber Gill
- Departamento de Química Física, Universidad de Valencia Avda Dr Moliner, 50, Burjassot E-46100 Valencia Spain
| | - Muhammad Tariq Aziz
- Department of Chemistry, Government College University Faisalabad Faisalabad 38000 Pakistan
| | - Hany W Darwish
- Department of Pharmaceutical Chemistry, College of Pharmacy, King Saud University P.O. Box 2457 Riyadh 11451 Saudi Arabia
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Aziz MT, Naqvi SAR, Janjua MRSA, Alam M, Gill WA. Exploring the adsorption behavior of molecular hydrogen on CHA-zeolite by comparing the performance of various force field methods. RSC Adv 2023; 13:30937-30950. [PMID: 37876651 PMCID: PMC10591995 DOI: 10.1039/d3ra04262f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2023] [Accepted: 10/12/2023] [Indexed: 10/26/2023] Open
Abstract
Molecular hydrogen (H2) adsorption plays a crucial role in numerous applications, including hydrogen storage and purification processes. Understanding the interaction of H2 with porous materials is essential for designing efficient adsorption systems. In this study, we investigate H2 adsorption on CHA-zeolite using a combination of density functional theory (DFT) and force field-based molecular dynamics (MD) simulations. Firstly, we employ DFT calculations to explore the energetic properties and adsorption sites of H2 on the CHA-zeolite framework. The electronic structure and binding energies of H2 in various adsorption configurations are analyzed, providing valuable insights into the nature of the adsorption process. Subsequently, force field methods are employed to perform extensive MD simulations, allowing us to study the dynamic behavior of H2 molecules adsorbed on the CHA-zeolite surface. The trajectory analysis provides information on the diffusion mechanisms and mobility of H2 within the porous structure, shedding light on the transport properties of the adsorbed gas. Furthermore, the combination of DFT and MD results enables us to validate and refine the force field parameters used in simulations, improving the accuracy of the model, and enhancing our understanding of the H2-CHA interactions. Our comprehensive investigation into molecular hydrogen adsorption on CHA-zeolite using density functional theory and molecular dynamics simulations yields valuable insights into the fundamental aspects of the adsorption process. These findings contribute to the development of advanced hydrogen storage and separation technologies, paving the way for efficient and sustainable energy applications.
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Affiliation(s)
- Muhammad Tariq Aziz
- Department of Chemistry, Government College University Faisalabad Faisalabad 38000 Pakistan
| | - Syed Ali Raza Naqvi
- Department of Chemistry, Government College University Faisalabad Faisalabad 38000 Pakistan
| | | | - Manawwer Alam
- Department of Chemistry, College of Science, King Saud University Riyadh 11451 Saudi Arabia
| | - Waqas Amber Gill
- Departamento de Química Física, Universidad de Valencia Avda Dr Moliner, 50, E-46100 Burjassot Valencia Spain
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Xu K, Lin Y, Li T, Fu Y, Zhang Z, Wu J. Structural and mechanical stability of clathrate hydrates encapsulating monoatomic guest species. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118391] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Correa E, Albernaz AF, Barreto PR, Aquilanti V. Long-range strength and anisotropies of molecule-molecule interactions: Ab initio calculations, spherical harmonics expansions, and the second virial coefficient for the H2⋯F2 gaseous mixture. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138845] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Lombardi A, Pirani F, Bartolomei M, Coletti C, Laganà A. Full Dimensional Potential Energy Function and Calculation of State-Specific Properties of the CO+N 2 Inelastic Processes Within an Open Molecular Science Cloud Perspective. Front Chem 2019; 7:309. [PMID: 31192186 PMCID: PMC6540877 DOI: 10.3389/fchem.2019.00309] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Accepted: 04/18/2019] [Indexed: 11/27/2022] Open
Abstract
A full dimensional Potential Energy Surface (PES) of the CO + N2 system has been generated by extending an approach already reported in the literature and applied to N2-N2 (Cappelletti et al., 2008), CO2-CO2 (Bartolomei et al., 2012), and CO2-N2 (Lombardi et al., 2016b) systems. The generation procedure leverages at the same time experimental measurements and high-level ab initio electronic structure calculations. The procedure adopts an analytic formulation of the PES accounting for the dependence of the electrostatic and non-electrostatic components of the intermolecular interaction on the deformation of the monomers. In particular, the CO and N2 molecular multipole moments and electronic polarizabilities, the basic physical properties controlling the behavior at intermediate and long-range distances of the interaction components, were made to depend on relevant internal coordinates. The formulated PES exhibits substantial advantages when used for structural and dynamical calculations. This makes it also well suited for reuse in Open Molecular Science Cloud services.
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Affiliation(s)
- Andrea Lombardi
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Perugia, Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2, Perugia, Italy
| | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, Perugia, Italy
| | - Massimiliano Bartolomei
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Cecilia Coletti
- Dipartimento di Farmacia, Università "G. d'Annunzio" Chieti-Pescara, Chieti, Italy
| | - Antonio Laganà
- Consortium for Computational Molecular and Materials Sciences (CMS)2, Perugia, Italy.,CNR ISTM-UOS Perugia, Perugia, Italy.,Master-UP srl, Perugia, Italy
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Vekeman J, G Cuesta I, Faginas-Lago N, Wilson J, Sánchez-Marín J, Sánchez de Merás A. Potential models for the simulation of methane adsorption on graphene: development and CCSD(T) benchmarks. Phys Chem Chem Phys 2018; 20:25518-25530. [PMID: 30277488 DOI: 10.1039/c8cp03652g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Different force fields for the graphene-CH4 system are proposed including pseudo-atom and full atomistic models. Furthermore, different charge schemes are tested to evaluate the electrostatic interaction for the CH4 dimer. The interaction parameters are optimized by fitting to interaction energies at the DFT level, which were themselves benchmarked against CCSD(T) calculations. The potentials obtained with both the pseudo-atom and full atomistic approaches describe accurately enough the average interaction in the methane dimer as well as in the graphene-methane system. Moreover, the atom-atom potentials also correctly provide the energies associated with different orientations of the molecules. In the atomistic models, charge schemes including small charges allow for the adequate representation of the stability sequence of significant conformations of the methane dimer. Additionally, an intermediate charge of -0.63e on the carbon atom in methane leads to bond energies with errors of ca. 0.07 kcal mol-1 with respect to the CCSD(T) values for the methane dimer. For the graphene-methane interaction, the atom-atom potential model predicts an average interaction energy of 2.89 kcal mol-1, comparable to the experimental interaction energy of 3.00 kcal mol-1. Finally, the presented force fields were used to obtain self-diffusion coefficients that were checked against the experimental value found in the literature. The no-charge and Hirshfeld charge atom-atom models perform extremely well in this respect, while the cheapest potential considered, a pseudo-atom model without charges, still performs reasonably well.
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Affiliation(s)
- J Vekeman
- Instituto de Ciencia Molecular, Parc cientifico de la Universidad de Valencia, C/Catedrático José Beltrán 2, E-46980 Paterna, Spain.
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Shizgal BD. A comparison of pseudospectral methods for the solution of the Schrödinger equation; the Lennard-Jones ( n , 6) potential. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2017.05.009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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9
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Lombardi A, Pirani F, Laganà A, Bartolomei M. Energy transfer dynamics and kinetics of elementary processes (promoted) by gas-phase CO2 -N2 collisions: Selectivity control by the anisotropy of the interaction. J Comput Chem 2016; 37:1463-75. [PMID: 27031183 DOI: 10.1002/jcc.24359] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2015] [Revised: 02/01/2016] [Accepted: 02/22/2016] [Indexed: 11/10/2022]
Abstract
In this work, we exploit a new formulation of the potential energy and of the related computational procedures, which embodies the coupling between the intra and intermolecular components, to characterize possible propensities of the collision dynamics in energy transfer processes of interest for simulation and control of phenomena occurring in a variety of equilibrium and nonequilibrium environments. The investigation reported in the paper focuses on the prototype CO2 -N2 system, whose intramolecular component of the interaction is modeled in terms of a many body expansion while the intermolecular component is modeled in terms of a recently developed bonds-as-interacting-molecular-centers' approach. The main advantage of this formulation of the potential energy surface is that of being (a) truly full dimensional (i.e., all the variations of the coordinates associated with the molecular vibrations and rotations on the geometrical and electronic structure of the monomers, are explicitly taken into account without freezing any bonds or angles), (b) more flexible than other usual formulations of the interaction and (c) well suited for fitting procedures better adhering to accurate ab initio data and sensitive to experimental arrangement dependent information. Specific attention has been given to the fact that a variation of vibrational and rotational energy has a higher (both qualitative and quantitative) impact on the energy transfer when a more accurate formulation of the intermolecular interaction (with respect to that obtained when using rigid monomers) is adopted. This makes the potential energy surface better suited for the kinetic modeling of gaseous mixtures in plasma, combustion and atmospheric chemistry computational applications. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Andrea Lombardi
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce di Sotto 8, Perugia, 06123, Italy
| | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce di Sotto 8, Perugia, 06123, Italy
| | - Antonio Laganà
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce di Sotto 8, Perugia, 06123, Italy
| | - Massimiliano Bartolomei
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 123, Madrid, 28006, Spain
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Albernaz AF, Aquilanti V, Barreto PRP, Caglioti C, Cruz ACPS, Grossi G, Lombardi A, Palazzetti F. Interactions of Hydrogen Molecules with Halogen-Containing Diatomics from Ab Initio Calculations: Spherical-Harmonics Representation and Characterization of the Intermolecular Potentials. J Phys Chem A 2016; 120:5315-24. [DOI: 10.1021/acs.jpca.6b01718] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alessandra F. Albernaz
- Instituto
de Física, Universidade de Brasília, CP04455, Brasília, Distrito Federal CEP 70919-970, Brazil
| | - Vincenzo Aquilanti
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Patricia R. P. Barreto
- Instituto Nacional de Pesquisas Espaciais (INPE)/MCT, Laboratòrio Associado de Plasma (LAP), CP515, São José
dos Campos, São Paulo CEP 12247-970, Brazil
| | - Concetta Caglioti
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Ana Claudia P. S. Cruz
- Instituto Nacional de Pesquisas Espaciais (INPE)/MCT, Laboratòrio Associado de Plasma (LAP), CP515, São José
dos Campos, São Paulo CEP 12247-970, Brazil
| | - Gaia Grossi
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Andrea Lombardi
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Federico Palazzetti
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126, Pisa, Italy
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Lombardi A, Faginas-Lago N, Pacifici L, Grossi G. Energy transfer upon collision of selectively excited CO2 molecules: State-to-state cross sections and probabilities for modeling of atmospheres and gaseous flows. J Chem Phys 2015. [PMID: 26203027 DOI: 10.1063/1.4926880] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
Carbon dioxide molecules can store and release tens of kcal/mol upon collisions, and such an energy transfer strongly influences the energy disposal and the chemical processes in gases under the extreme conditions typical of plasmas and hypersonic flows. Moreover, the energy transfer involving CO2 characterizes the global dynamics of the Earth-atmosphere system and the energy balance of other planetary atmospheres. Contemporary developments in kinetic modeling of gaseous mixtures are connected to progress in the description of the energy transfer, and, in particular, the attempts to include non-equilibrium effects require to consider state-specific energy exchanges. A systematic study of the state-to-state vibrational energy transfer in CO2 + CO2 collisions is the focus of the present work, aided by a theoretical and computational tool based on quasiclassical trajectory simulations and an accurate full-dimension model of the intermolecular interactions. In this model, the accuracy of the description of the intermolecular forces (that determine the probability of energy transfer in molecular collisions) is enhanced by explicit account of the specific effects of the distortion of the CO2 structure due to vibrations. Results show that these effects are important for the energy transfer probabilities. Moreover, the role of rotational and vibrational degrees of freedom is found to be dominant in the energy exchange, while the average contribution of translations, under the temperature and energy conditions considered, is negligible. Remarkable is the fact that the intramolecular energy transfer only involves stretching and bending, unless one of the colliding molecules has an initial symmetric stretching quantum number greater than a threshold value estimated to be equal to 7.
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Affiliation(s)
- A Lombardi
- Dipartimento di Chimica, Università di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy
| | - N Faginas-Lago
- Dipartimento di Chimica, Università di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy
| | - L Pacifici
- Dipartimento di Chimica, Università di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy
| | - G Grossi
- Dipartimento di Chimica, Università di Perugia, via Elce di Sotto 8, 06123 Perugia, Italy
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Lombardi A, Faginas-Lago N, Pacifici L, Costantini A. Modeling of Energy Transfer From Vibrationally Excited CO2 Molecules: Cross Sections and Probabilities for Kinetic Modeling of Atmospheres, Flows, and Plasmas. J Phys Chem A 2013; 117:11430-40. [PMID: 24117231 DOI: 10.1021/jp408522m] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Andrea Lombardi
- Dipartimento di Chimica, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Noelia Faginas-Lago
- Dipartimento di Chimica, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Leonardo Pacifici
- Dipartimento di Chimica, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
| | - Alessandro Costantini
- Dipartimento di Chimica, Università di Perugia, via Elce
di Sotto 8, 06123 Perugia, Italy
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13
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Bartolomei M, Pirani F, Laganà A, Lombardi A. A full dimensional grid empowered simulation of the CO2 + CO2 processes. J Comput Chem 2012; 33:1806-19. [PMID: 22618572 DOI: 10.1002/jcc.23010] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2012] [Revised: 03/26/2012] [Accepted: 04/15/2012] [Indexed: 11/06/2022]
Affiliation(s)
- Massimiliano Bartolomei
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas Serrano 123, 28006 Madrid, Spain
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