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Hou M, Jin K, Li Q, Liu S. Systematic study of the substitution effect on the tetrel bond between 1,4-diazabicyclo[2.2.2]octane and TH 3X. RSC Adv 2019; 9:18459-18466. [PMID: 35515262 PMCID: PMC9064731 DOI: 10.1039/c9ra03351c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 06/03/2019] [Indexed: 11/21/2022] Open
Abstract
A tetrel bond was characterized in the complexes of 1,4-diazabicyclo[2.2.2]octane (DABCO) with TH3X (T = C, Si, Ge; X= -Me, -H, -OH, -NH2, -F, -Cl, -Br, -I, -CN, -NO2). DABCO engages in a weak tetrel bond with CH3X but a stronger one with SiH3X and GeH3X. SiH3X is favorable to bind with DABCO relative to GeH3X, inconsistent with the magnitude of the σ-hole on the tetrel atom. The methyl group in the tetrel donor weakens the tetrel bond but an enhancing effect is found for the other substituents, particularly -NO2. The substitution effect is also related to the nature of the tetrel atom. The halogen substitution from F to I has a weakening effect in the CH3X complex but an enhancing effect in the SiH3X complex and a negligible effect in the GeH3X complex. The above abnormal results found in these complexes can be partly attributed to the charge transfer from the lone pair on the nitrogen atom of DABCO into the anti-bonding orbital σ*(T-X) of TH3X. The stability of both SiH3X and GeH3X complexes is primarily controlled by electrostatic interactions and polarization.
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Affiliation(s)
- Mingchang Hou
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Kunyu Jin
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University Yantai 264005 People's Republic of China
| | - Shufeng Liu
- Shandong Key Laboratory of Biochemical Analysis, College of Chemistry and Molecular Engineering, Qingdao University of Science and Technology Qingdao 266042 PR China
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Li X, He A, Huang K, Liu H, Zhao Y, Wei Y, Xu Y, Noda I, Wu J. Two-dimensional asynchronous spectrum with auxiliary cross peaks in probing intermolecular interactions. RSC Adv 2015. [DOI: 10.1039/c5ra16062f] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
A new approach called “asynchronous spectrum with auxiliary peaks (ASAP)” is proposed for generating a 2D asynchronous spectrum to investigate the intermolecular interaction between two solutes (P and Q) dissolved in the same solution.
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Affiliation(s)
- Xiaopei Li
- Institute of Process Engineering
- Chinese Academy of Sciences
- P. R. China
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory for Rare Earth Materials Chemistry and Applications
| | - Anqi He
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory for Rare Earth Materials Chemistry and Applications
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
| | - Kun Huang
- Institute of Process Engineering
- Chinese Academy of Sciences
- P. R. China
| | - Huizhou Liu
- Institute of Process Engineering
- Chinese Academy of Sciences
- P. R. China
| | - Ying Zhao
- Institute of Chemistry
- Chinese Academy of Sciences
- P. R. China
| | - Yongju Wei
- College of Chemistry and Material Science
- Hebei Normal University
- Shijiazhuang
- P. R. China
| | - Yizhuang Xu
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory for Rare Earth Materials Chemistry and Applications
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
| | - Isao Noda
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory for Rare Earth Materials Chemistry and Applications
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
| | - Jinguang Wu
- Beijing National Laboratory for Molecular Sciences
- State Key Laboratory for Rare Earth Materials Chemistry and Applications
- College of Chemistry and Molecular Engineering
- Peking University
- Beijing 100871
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An XL, Li R, Li QZ, Liu XF, Li WZ, Cheng JB. Substitution, cooperative, and solvent effects on π pnicogen bonds in the FH2P and FH2As complexes. J Mol Model 2012; 18:4325-32. [DOI: 10.1007/s00894-012-1445-9] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2012] [Accepted: 04/23/2012] [Indexed: 10/28/2022]
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Li Q, Liu X, Li R, Cheng J, Li W. Competition between dihydrogen bond and beryllium bond in complexes between HBeH and HArF: a huge blue shift of distant H-Ar stretch. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2012; 90:135-140. [PMID: 22336045 DOI: 10.1016/j.saa.2012.01.022] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2011] [Revised: 01/02/2012] [Accepted: 01/16/2012] [Indexed: 05/31/2023]
Abstract
A novel interaction mechanism between HArF and BeH(2) has been validated and characterized with quantum chemical calculations at the MP2/aug-cc-pVQZ level. They can interact through beryllium bonding formed between the positively charged Be atom in BeH(2) and the negatively charged F atom in HArF, besides through dihydrogen bonding. The former (61.3 kcal/mol) is much stronger than the latter (5.9 kcal/mol). The red shift is found for the associated H-Ar stretch in the dihydrogen bonding, whereas the big blue shift is observed for the distant H-Ar stretch in the beryllium bonding. The blue shift of the distant H-Ar stretch is affected greatly by computational methods. It is calculated to be 712 cm(-1) at the CCSD(T)/6-311++G(3df,2p) level, which appears to be the largest blue shift validated for any weakly bound complex yet. The substitution effect on the beryllium bond is similar to that on hydrogen bonds. The Kr atom makes the beryllium bond weaken and the distant blue shift decrease. The nature and properties of beryllium bond have been analyzed with natural bond orbital (NBO), atoms in molecules (AIM), and energy decomposition.
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Affiliation(s)
- Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, PR China.
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Jing B, Li QZ, Gong BA, Liu ZB, Li WZ, Cheng JB, Sun JZ. The prominent enhancing effect and mechanism of the methyl group in the X···Y (X=O, S, H3CO, H3CS, (H3C)2O, (H3C)2S; Y=HCN, HNC) hydrogen-bonded complex. Mol Phys 2011. [DOI: 10.1080/00268976.2011.554899] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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7
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Li Q, Jing B, Liu Z, Li W, Cheng J, Gong B, Sun J. Surprising enhancing effect of methyl group on the strength of O⋯XF and S⋯XF (X=Cl and Br) halogen bonds. J Chem Phys 2010; 133:114303. [DOI: 10.1063/1.3479398] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Wang NN, Zhang QG, Wu FG, Li QZ, Yu ZW. Hydrogen Bonding Interactions between a Representative Pyridinium-Based Ionic Liquid [BuPy][BF4] and Water/Dimethyl Sulfoxide. J Phys Chem B 2010; 114:8689-700. [DOI: 10.1021/jp103438q] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nan-Nan Wang
- Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China, College of Chemistry and Chemical Engineering, Bohai University, Jinzhou 121000, People’s Republic of China, and The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Qing-Guo Zhang
- Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China, College of Chemistry and Chemical Engineering, Bohai University, Jinzhou 121000, People’s Republic of China, and The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Fu-Gen Wu
- Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China, College of Chemistry and Chemical Engineering, Bohai University, Jinzhou 121000, People’s Republic of China, and The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Qing-Zhong Li
- Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China, College of Chemistry and Chemical Engineering, Bohai University, Jinzhou 121000, People’s Republic of China, and The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
| | - Zhi-Wu Yu
- Key Laboratory of Bioorganic Phosphorous Chemistry and Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China, College of Chemistry and Chemical Engineering, Bohai University, Jinzhou 121000, People’s Republic of China, and The Laboratory of Theoretical and Computational Chemistry, Science and Engineering College of Chemistry and Biology, Yantai University, Yantai 264005, People’s Republic of China
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Li QZ, Dong X, Jing B, Li WZ, Cheng JB, Gong BA, Yu ZW. A new unconventional halogen bond CX···HM between HCCX (X = Cl and Br) and HMH (M = Be and Mg): An ab initio study. J Comput Chem 2009; 31:1662-9. [DOI: 10.1002/jcc.21451] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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