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Bobalova J, Strouhalova D, Bobal P. Common Post-translational Modifications (PTMs) of Proteins: Analysis by Up-to-Date Analytical Techniques with an Emphasis on Barley. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2023; 71:14825-14837. [PMID: 37792446 PMCID: PMC10591476 DOI: 10.1021/acs.jafc.3c00886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Revised: 09/07/2023] [Accepted: 09/12/2023] [Indexed: 10/05/2023]
Abstract
Post-translational modifications (PTMs) of biomacromolecules can be useful for understanding the processes by which a relatively small number of individual genes in a particular genome can generate enormous biological complexity in different organisms. The proteomes of barley and the brewing process were investigated by different techniques. However, their diverse and complex PTMs remain understudied. As standard analytical approaches have limitations, innovative analytical approaches need to be developed and applied in PTM studies. To make further progress in this field, it is necessary to specify the sites of modification, as well as to characterize individual isoforms with increased selectivity and sensitivity. This review summarizes advances in the PTM analysis of barley proteins, particularly those involving mass spectrometric detection. Our focus is on monitoring phosphorylation, glycation, and glycosylation, which critically influence functional behavior in metabolism and regulation in organisms.
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Affiliation(s)
- Janette Bobalova
- Institute
of Analytical Chemistry of the CAS, v. v. i., Veveri 97, Brno 602 00, Czech Republic
| | - Dana Strouhalova
- Institute
of Analytical Chemistry of the CAS, v. v. i., Veveri 97, Brno 602 00, Czech Republic
| | - Pavel Bobal
- Masaryk
University, Department of Chemical Drugs,
Faculty of Pharmacy, Palackeho
1946/1, Brno 612 00, Czech Republic
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2
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Hallez F, Combès A, Desoubries C, Bossée A, Pichon V. Development of an immobilized-trypsin reactor coupled to liquid chromatography and tandem mass spectrometry for the analysis of human hemoglobin adducts with sulfur mustard. J Chromatogr B Analyt Technol Biomed Life Sci 2021; 1186:123031. [PMID: 34781109 DOI: 10.1016/j.jchromb.2021.123031] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Revised: 11/03/2021] [Accepted: 11/07/2021] [Indexed: 11/24/2022]
Abstract
Sulfur mustard reacts with blood proteins, such as hemoglobin, to form stable adducts that can be used as long-lived biomarkers of exposure. These adducts can be analyzed by liquid chromatography coupled to tandem mass-spectrometry (LC-MS/MS) after an enzymatic digestion step. The objective of this study was to develop trypsin-based immobilized enzyme reactors (IMERs) in order to obtain a faster digestion of hemoglobin than the conventional in-solution digestion. Trypsin IMERs were synthetized by grafting the enzyme on a CNBr-Sepharose gel and the influence of several parameters on the digestion yields, such as the transfer volume between the injection loop and the IMER, the temperature and the digestion time was studied. The repeatability of the digestion on three laboratory-made IMERs was demonstrated for pure hemoglobin and hemoglobin previously exposed to different concentrations of sulfur mustard (RSD inferior to 13% and 21% respectively) and was better than that obtained for in-solution digestions (RSD inferior to 28% and up to 53% respectively). A preferential adduction of sulfur mustard on the histidine residues of hemoglobin was confirmed, for both in-solution and IMER digestion results. On a quantitative point of view, the performances of in-solution and IMER digestions were similar, with the theoretical possibility to detect peptides resulting from the in vitro incubation of hemoglobin in pure water with sulfur mustard at 7.5 ng⋅mL-1. However, digestion on IMER proved to be more repeatable and 32 times faster than in-solution digestion, and a given IMER could be reused at least 60 times.
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Affiliation(s)
- Florine Hallez
- Department of Analytical, Bioanalytical Sciences and Miniaturization (LSABM), Chemistry, Biology and Innovation (CBI), ESPCI Paris, PSL University, CNRS, 10 rue Vauquelin, 75005 Paris, France
| | - Audrey Combès
- Department of Analytical, Bioanalytical Sciences and Miniaturization (LSABM), Chemistry, Biology and Innovation (CBI), ESPCI Paris, PSL University, CNRS, 10 rue Vauquelin, 75005 Paris, France
| | - Charlotte Desoubries
- DGA, CBRN Defence, Analytical Chemistry Department, 5 rue Lavoisier, 91710 Vert-le-Petit, France
| | - Anne Bossée
- DGA, CBRN Defence, Analytical Chemistry Department, 5 rue Lavoisier, 91710 Vert-le-Petit, France
| | - Valérie Pichon
- Department of Analytical, Bioanalytical Sciences and Miniaturization (LSABM), Chemistry, Biology and Innovation (CBI), ESPCI Paris, PSL University, CNRS, 10 rue Vauquelin, 75005 Paris, France; Sorbonne Université, Campus UPMC, 4 Place Jussieu, 75005 Paris, France.
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3
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Zhong C, Ma W, He Y, Ouyang D, Li G, Yang Y, Zheng Q, Huang H, Cai Z, Lin Z. Controllable Synthesis of Hollow Microtubular Covalent Organic Frameworks as an Enzyme-Immobilized Platform for Enhancing Catalytic Activity. ACS APPLIED MATERIALS & INTERFACES 2021; 13:52417-52424. [PMID: 34723457 DOI: 10.1021/acsami.1c16386] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Despite great achievement that has been made in the synthesis of covalent organic frameworks (COFs), precise construction of COFs with well-defined nano/microstructures poses a rigorous challenge. Herein, we introduce a simple template-free strategy for controllable synthesis of hollow microtubular COFs. The obtained COFs show a spontaneous morphology transformation from a microfiber to a hollow microtubular structure when the concentrations of catalytic acid are regulated elaborately. Furthermore, the as-prepared COFs exhibit high crystallinity, well-defined hollow tubular morphology, and high surface areas (∼2600 m2/g). Taking the advantages of the unique morphological structure, the hollow microtubular COFs can serve as an ideal host material for enzymes. The resultant biocomposites show high catalytic performance and can be successfully applied to rapid and high-efficiency proteolysis of proteins. This work blazes a trail for controllable synthesis of the hollow microtubular COFs through a template-free process and expands the application of COFs as a promising platform for enzyme immobilization.
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Affiliation(s)
- Chao Zhong
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Wende Ma
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Yanting He
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Dan Ouyang
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Guorong Li
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Yixin Yang
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Qiong Zheng
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Huan Huang
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
| | - Zongwei Cai
- State Key Laboratory of Environmental and Biological Analysis, Department of Chemistry, Hong Kong Baptist University, 224 Waterloo Road, Kowloon Tong, Hong Kong, SAR 999077, P. R. China
| | - Zian Lin
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350108, China
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4
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Electrostatic and Hydrogen Bond Immobilization of Trypsine onto pH-Sensitive N-Vinylpyrrolidone and 4-Vinylpyridine Radical co-Grafted Chitosan Based on Hydrogel. Macromol Res 2021. [DOI: 10.1007/s13233-021-9015-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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5
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Lin J, Zhong C, Lu Q, Lin Z. Room‐Temperature Synthesis of Trypsin‐Inorganic Hybrid Nanocomposites for Fast and Efficient Protein Digestion. ChemistrySelect 2020. [DOI: 10.1002/slct.202002859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Juan Lin
- Department of Cardiology Fujian Provincial Governmental Hospital Fuzhou 350003 China
| | - Chao Zhong
- Ministry of Education Key Laboratory of Analytical Science of Food Safety and Biology, College of Chemistry Fuzhou University Fujian 350116 China
| | - Qiaomei Lu
- Ministry of Education Key Laboratory of Analytical Science of Food Safety and Biology, College of Chemistry Fuzhou University Fujian 350116 China
| | - Zian Lin
- Ministry of Education Key Laboratory of Analytical Science of Food Safety and Biology, College of Chemistry Fuzhou University Fujian 350116 China
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6
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Preparation of bio-electrodes via Langmuir-Blodgett technique for pharmaceutical and waste industries and their biosensor application. Colloids Surf A Physicochem Eng Asp 2019. [DOI: 10.1016/j.colsurfa.2019.124005] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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7
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Lam SC, Sanz Rodriguez E, Haddad PR, Paull B. Recent advances in open tubular capillary liquid chromatography. Analyst 2019; 144:3464-3482. [DOI: 10.1039/c9an00329k] [Citation(s) in RCA: 40] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review covers advances and applications of open tubular capillary liquid chromatography (OT-LC) over the period 2007–2018.
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Affiliation(s)
- Shing Chung Lam
- ASTech
- ARC Training Centre for Portable Analytical Separation Technologies (ASTech)
- and Australian Centre for Research on Separation Science (ACROSS)
- School of Natural Sciences
- University of Tasmania
| | - Estrella Sanz Rodriguez
- ASTech
- ARC Training Centre for Portable Analytical Separation Technologies (ASTech)
- and Australian Centre for Research on Separation Science (ACROSS)
- School of Natural Sciences
- University of Tasmania
| | - Paul R. Haddad
- ASTech
- ARC Training Centre for Portable Analytical Separation Technologies (ASTech)
- and Australian Centre for Research on Separation Science (ACROSS)
- School of Natural Sciences
- University of Tasmania
| | - Brett Paull
- ASTech
- ARC Training Centre for Portable Analytical Separation Technologies (ASTech)
- and Australian Centre for Research on Separation Science (ACROSS)
- School of Natural Sciences
- University of Tasmania
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8
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Naldi M, Tramarin A, Bartolini M. Immobilized enzyme-based analytical tools in the -omics era: Recent advances. J Pharm Biomed Anal 2018; 160:222-237. [DOI: 10.1016/j.jpba.2018.07.051] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2018] [Revised: 07/26/2018] [Accepted: 07/30/2018] [Indexed: 02/01/2023]
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9
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Liu W, Pang Y, Tan HY, Patel N, Jokhadze G, Guthals A, Bruening ML. Enzyme-containing spin membranes for rapid digestion and characterization of single proteins. Analyst 2018; 143:3907-3917. [PMID: 30039812 DOI: 10.1039/c8an00969d] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Proteolytic digestion is an important step in characterizing protein sequences and post-translational modifications (PTMs) using mass spectrometry (MS). This study uses pepsin- or trypsin-containing spin membranes for rapid digestion of single proteins or simple protein mixtures prior to ultrahigh-resolution Orbitrap MS analysis. Centrifugation of 100 μL of pretreated protein solutions through the functionalized membranes requires less than 1 min and conveniently digests proteins into large peptides that aid in confirming specific protein sequence variations and PTMs. Peptic and tryptic peptides from spin digestion of apomyoglobin and four commercial monoclonal antibodies (mAbs) typically cover 100% of the protein sequences in direct infusion MS analysis. Increasing the spin rate leads to a higher fraction of large peptic peptides for apomyoglobin, and MS analysis of peptic and tryptic peptides reveals mAb PTMs such as N-terminal pyroglutamate formation, C-terminal lysine clipping and glycosylation. Relative to overnight in-solution digestion of mAbs, spin digestion yields higher sequence coverages. Spin-membrane digestion followed by infusion MS readily differentiates a mAb to the Ebola virus from a related antibody that differs by addition of a single amino acid.
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Affiliation(s)
- Weijing Liu
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, USA
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10
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Lei Z, Gao C, Chen L, He Y, Ma W, Lin Z. Recent advances in biomolecule immobilization based on self-assembly: organic-inorganic hybrid nanoflowers and metal-organic frameworks as novel substrates. J Mater Chem B 2018; 6:1581-1594. [PMID: 32254274 DOI: 10.1039/c7tb03310a] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
In the past few years, the immobilization of biomolecules on hybrid nanoflowers and metal-organic frameworks (MOFs) via self-assembly synthesis has received much attention due to its simplicity, high efficiency, and a bright prospect of enhancing the stability, activity and even selectivity of biomolecules compared to conventional immobilization methods. In the synthesis of organic-inorganic hybrid nanoflowers, biomolecules used as organic components are simply mixed with metal ions which act as inorganic components to form flower-like nanocomposites, while in the self-assembly process of encapsulating biomolecules in MOFs (biomolecule@MOF composites), the biomolecules just need to be added to the precursor mixtures of MOFs, in which the biomolecules are therefore embedded in MOF crystals with small pores. In this review, we focus on the recent advances of these composites, especially in the synthesis strategies, mechanism and applications in biosensors, biomedicine, pollutant disposal, and industrial biocatalysis, and future perspectives are discussed as well.
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Affiliation(s)
- Zhixian Lei
- Ministry of Education Key Laboratory of Analytical Science of Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian 350116, China.
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11
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Kayili HM, Salih B. Fast and efficient proteolysis by reusable pepsin-encapsulated magnetic sol-gel material for mass spectrometry-based proteomics applications. Talanta 2016; 155:78-86. [DOI: 10.1016/j.talanta.2016.04.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2015] [Revised: 03/30/2016] [Accepted: 04/05/2016] [Indexed: 01/11/2023]
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12
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Physisorption of α-chymotrypsin on SiO2 and TiO2: A comparative study via experiments and molecular dynamics simulations. Biointerphases 2016; 11:011007. [DOI: 10.1116/1.4940701] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
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13
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Lai E, Wang Y, Wei Y, Li G, Ma G. Covalent immobilization of trypsin onto thermo-sensitive poly(N-isopropylacrylamide-co-acrylic acid) microspheres with high activity and stability. J Appl Polym Sci 2016. [DOI: 10.1002/app.43343] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Enping Lai
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering; Donghua University; Shanghai 201620 People's Republic of China
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering; Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Yuxia Wang
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering; Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Yi Wei
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering; Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Guang Li
- State Key Laboratory for Modification of Chemical Fibers and Polymer Materials, College of Materials Science and Engineering; Donghua University; Shanghai 201620 People's Republic of China
| | - Guanghui Ma
- National Key Laboratory of Biochemical Engineering, Institute of Process Engineering; Chinese Academy of Sciences; Beijing 100190 People's Republic of China
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14
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Han W, Xin Y, Hasegawa U, Uyama H. Enzyme immobilization on polymethacrylate-based monolith fabricated via thermally induced phase separation. Polym Degrad Stab 2014. [DOI: 10.1016/j.polymdegradstab.2014.05.032] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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15
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Nakagawa K, Tamura A, Chaiya C. Preparation of proteolytic microreactors by freeze-drying immobilization. Chem Eng Sci 2014. [DOI: 10.1016/j.ces.2014.07.054] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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16
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17
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Lafarga T, Hayes M. Bioactive peptides from meat muscle and by-products: generation, functionality and application as functional ingredients. Meat Sci 2014; 98:227-39. [DOI: 10.1016/j.meatsci.2014.05.036] [Citation(s) in RCA: 197] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Revised: 05/14/2014] [Accepted: 05/30/2014] [Indexed: 01/12/2023]
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18
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Ruan G, Wei M, Chen Z, Su R, Du F, Zheng Y. Novel regenerative large-volume immobilized enzyme reactor: Preparation, characterization and application. J Chromatogr B Analyt Technol Biomed Life Sci 2014; 967:13-20. [DOI: 10.1016/j.jchromb.2014.07.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2014] [Revised: 05/30/2014] [Accepted: 07/07/2014] [Indexed: 10/25/2022]
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19
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Wetterhall M, Bergquist J, Hillered L, Hjort K, Dahlin AP. Identification of human cerebrospinal fluid proteins and their distribution in an in vitro microdialysis sampling system. Eur J Pharm Sci 2014; 57:34-40. [DOI: 10.1016/j.ejps.2013.12.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2013] [Accepted: 12/07/2013] [Indexed: 10/25/2022]
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20
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Bayramoglu G, Celikbicak O, Arica MY, Salih B. Trypsin Immobilized on Magnetic Beads via Click Chemistry: Fast Proteolysis of Proteins in a Microbioreactor for MALDI-ToF-MS Peptide Analysis. Ind Eng Chem Res 2014. [DOI: 10.1021/ie5002235] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
| | - Omur Celikbicak
- Department
of Chemistry, Hacettepe University, 06800 Ankara, Turkey
| | | | - Bekir Salih
- Department
of Chemistry, Hacettepe University, 06800 Ankara, Turkey
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21
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Development of continuous microwave-assisted protein digestion with immobilized enzyme. Biochem Biophys Res Commun 2014; 445:491-6. [DOI: 10.1016/j.bbrc.2014.02.025] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2014] [Accepted: 02/06/2014] [Indexed: 11/17/2022]
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22
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Gao M, Deng C, Zhang X. Magnetic nanoparticles-based digestion and enrichment methods in proteomics analysis. Expert Rev Proteomics 2014; 8:379-90. [DOI: 10.1586/epr.11.25] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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23
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Yin Z, Zhao W, Tian M, Zhang Q, Guo L, Yang L. A capillary electrophoresis-based immobilized enzyme reactor using graphene oxide as a support via layer by layer electrostatic assembly. Analyst 2014; 139:1973-9. [DOI: 10.1039/c3an02241b] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Using graphene oxide as an enzyme support, we developed a novel CE-based microreactor via layer-by-layer electrostatic assembly, which can be used for accurate on-line analysis and characterization of peptides and proteins.
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Affiliation(s)
- Zhengri Yin
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
| | - Wenwen Zhao
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
| | - Miaomiao Tian
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
| | - Qian Zhang
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
| | - Liping Guo
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
| | - Li Yang
- Faculty of Chemistry
- Northeast Normal University
- Changchun, P. R. China
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24
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Lin Z, Xiao Y, Wang L, Yin Y, Zheng J, Yang H, Chen G. Facile synthesis of enzyme–inorganic hybrid nanoflowers and their application as an immobilized trypsin reactor for highly efficient protein digestion. RSC Adv 2014. [DOI: 10.1039/c4ra00268g] [Citation(s) in RCA: 106] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Hybrid nanoflowers were synthesized by a novel approach. The nanoflowers exhibited an enhanced enzymatic activity and can be used as an immobilized enzyme reactor (IMER) for highly efficient protein digestion.
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Affiliation(s)
- Zian Lin
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Yun Xiao
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Ling Wang
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Yuqing Yin
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Jiangnan Zheng
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Huanghao Yang
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
| | - Guonan Chen
- Ministry of Education Key Laboratory of Analysis and Detection for Food Safety
- Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety
- Deparment of Chemistry
- Fuzhou University
- Fuzhou 350116, China
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25
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Bayramoglu G, Ozalp VC, Arica MY. Magnetic Polymeric Beads Functionalized with Different Mixed-Mode Ligands for Reversible Immobilization of Trypsin. Ind Eng Chem Res 2013. [DOI: 10.1021/ie402656p] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gulay Bayramoglu
- Biochemical
Processing and Biomaterial Research Laboratory, Gazi University, 06500 Teknikokullar-Ankara, Turkey
- Department
of Chemistry, Faculty of Sciences, Gazi University, 06500 Teknikokullar-Ankara, Turkey
| | - Veli Cengiz Ozalp
- School
of Medicine, Istanbul Kemerburgaz University, 34217 Istanbul, Turkey
| | - M. Yakup Arica
- Biochemical
Processing and Biomaterial Research Laboratory, Gazi University, 06500 Teknikokullar-Ankara, Turkey
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26
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Hustoft HK, Brandtzaeg OK, Rogeberg M, Misaghian D, Torsetnes SB, Greibrokk T, Reubsaet L, Wilson SR, Lundanes E. Integrated enzyme reactor and high resolving chromatography in "sub-chip" dimensions for sensitive protein mass spectrometry. Sci Rep 2013; 3:3511. [PMID: 24336509 PMCID: PMC3863811 DOI: 10.1038/srep03511] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2013] [Accepted: 11/28/2013] [Indexed: 12/29/2022] Open
Abstract
Reliable, sensitive and automatable analytical methodology is of great value in e.g. cancer diagnostics. In this context, an on-line system for enzymatic cleavage of proteins, subsequent peptide separation by liquid chromatography (LC) with mass spectrometric detection has been developed using "sub-chip" columns (10-20 μm inner diameter, ID). The system could detect attomole amounts of isolated cancer biomarker progastrin-releasing peptide (ProGRP), in a more automatable fashion compared to previous methods. The workflow combines protein digestion using an 20 μm ID immobilized trypsin reactor with a polymeric layer of 2-hydroxyethyl methacrylate-vinyl azlactone (HEMA-VDM), desalting on a polystyrene-divinylbenzene (PS-DVB) monolithic trap column, and subsequent separation of resulting peptides on a 10 μm ID (PS-DVB) porous layer open tubular (PLOT) column. The high resolution of the PLOT columns was maintained in the on-line system, resulting in narrow chromatographic peaks of 3-5 seconds. The trypsin reactors provided repeatable performance and were compatible with long-term storage.
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Affiliation(s)
- Hanne Kolsrud Hustoft
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
| | | | - Magnus Rogeberg
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
- Department of Neurology, Akershus University Hospital, 1478 Lørenskog, Norway
| | - Dorna Misaghian
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
| | - Silje Bøen Torsetnes
- School of Pharmacy, University of Oslo, Post Box 1068 Blindern, NO-0316 Oslo, Norway
| | - Tyge Greibrokk
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
| | - Léon Reubsaet
- School of Pharmacy, University of Oslo, Post Box 1068 Blindern, NO-0316 Oslo, Norway
| | - Steven Ray Wilson
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
| | - Elsa Lundanes
- Department of Chemistry, University of Oslo, Post Box 1033 Blindern, NO-0315 Oslo, Norway
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27
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Ruan G, Chen Z, Wei M, Liu Y, Li H, Du F. The study on microwave assisted enzymatic digestion of ginkgo protein. ACTA ACUST UNITED AC 2013. [DOI: 10.1016/j.molcatb.2013.04.010] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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28
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Homaei AA, Sariri R, Vianello F, Stevanato R. Enzyme immobilization: an update. J Chem Biol 2013; 6:185-205. [PMID: 24432134 DOI: 10.1007/s12154-013-0102-9] [Citation(s) in RCA: 479] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2013] [Accepted: 07/31/2013] [Indexed: 11/25/2022] Open
Abstract
Compared to free enzymes in solution, immobilized enzymes are more robust and more resistant to environmental changes. More importantly, the heterogeneity of the immo-bilized enzyme systems allows an easy recovery of both enzymes and products, multiple re-use of enzymes, continuous operation of enzymatic processes, rapid termination of reactions, and greater variety of bioreactor designs. This paper is a review of the recent literatures on enzyme immobilization by various techniques, the need for immobilization and different applications in industry, covering the last two decades. The most recent papers, patents, and reviews on immobilization strategies and application are reviewed.
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Affiliation(s)
- Ahmad Abolpour Homaei
- Department of Biology, Faculty of Science, University of Hormozgan, Bandarabbas, Iran
| | - Reyhaneh Sariri
- Reyhaneh Sariri, Department of Microbiology, Lahijan Branch, Islamic Azad University, Lahijan, Iran
| | - Fabio Vianello
- Department of Comparative Biomedicine and Food Science, University of Padua, Padua, Italy
| | - Roberto Stevanato
- Department of Molecular Sciences and Nanosystems, University of Venice, Venice, Italy
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29
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Analysis of biopharmaceutical proteins in biological matrices by LC-MS/MS I. Sample preparation. Trends Analyt Chem 2013. [DOI: 10.1016/j.trac.2012.11.015] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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30
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Ghafourifar G, Fleitz A, Waldron KC. Development of glutaraldehyde-crosslinked chymotrypsin and an in situ immobilized enzyme microreactor with peptide mapping by capillary electrophoresis. Electrophoresis 2013; 34:1804-11. [PMID: 23686566 DOI: 10.1002/elps.201200663] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2012] [Revised: 02/10/2013] [Accepted: 02/19/2013] [Indexed: 11/06/2022]
Abstract
Immobilized proteolytic enzymes present several advantages over their soluble form, not the least of which is suppression of autoproteolysis peaks even at high enzyme-to-substrate ratios. We have made immobilized chymotrypsin by directly crosslinking it with glutaraldehyde to produce polymeric particles. Digestion of two model substrates using the particles was followed by CE peptide mapping with detection by UV absorbance or LIF. Results showed that autoproteolysis was highly suppressed and that different storage conditions of the particles in the short term (24 h) did not affect digestion of denatured BSA. As well, the chymotrypsin particles were indifferent to the presence of fluorescein groups on a casein substrate. Glutaraldehyde crosslinking of chymotrypsin inside a fused silica capillary column to make an immobilized enzyme reactor (IMER) was achieved in a series of reagent addition and washing steps, entirely automated using a commercial CE instrument. Digestion of myoglobin in the IMER for 30 min at 37°C followed by peptide mapping by CE-MS of the collected digest allowed identification of 17 chymotryptic peptides of myoglobin, or 83% primary sequence coverage.
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31
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Prikryl P, Ticha M, Kucerova Z. Immobilized endoproteinase Glu-C to magnetic bead cellulose as a tool in proteomic analysis. J Sep Sci 2013; 36:2043-8. [DOI: 10.1002/jssc.201300118] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2013] [Revised: 04/01/2013] [Accepted: 04/01/2013] [Indexed: 11/09/2022]
Affiliation(s)
- Petr Prikryl
- Institute of Pathological Physiology; First Faculty of Medicine; Charles University; Prague Czech Republic
| | - Marie Ticha
- Institute of Pathological Physiology; First Faculty of Medicine; Charles University; Prague Czech Republic
- Department of Biochemistry; Faculty of Science; Charles University; Prague Czech Republic
| | - Zdenka Kucerova
- Institute of Pathological Physiology; First Faculty of Medicine; Charles University; Prague Czech Republic
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32
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Vlakh EG, Tennikova TB. Flow-through immobilized enzyme reactors based on monoliths: I. Preparation of heterogeneous biocatalysts. J Sep Sci 2013; 36:110-27. [DOI: 10.1002/jssc.201200594] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2012] [Revised: 08/13/2012] [Accepted: 08/13/2012] [Indexed: 11/11/2022]
Affiliation(s)
- Evgenia G. Vlakh
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
| | - Tatiana B. Tennikova
- Institute of Macromolecular Compounds; Russian Academy of Sciences; St. Petersburg Russia
- Faculty of Chemistry; Saint-Petersburg State University; St. Petersburg Russia
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33
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Sakata M, Funatsu A, Sonoda S, Ogata T, Taniguchi T, Matsumoto Y. Immobilization of Trypsin on Graphene Oxide Nanosheets for Increased Proteolytic Stability. CHEM LETT 2012. [DOI: 10.1246/cl.2012.1625] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Masayo Sakata
- Graduate School of Science and Technology, Kumamoto University
- JST, CREST
| | - Asami Funatsu
- Graduate School of Science and Technology, Kumamoto University
- JST, CREST
| | - Shohei Sonoda
- Graduate School of Science and Technology, Kumamoto University
| | - Tatsuya Ogata
- Graduate School of Science and Technology, Kumamoto University
| | - Takaaki Taniguchi
- Graduate School of Science and Technology, Kumamoto University
- JST, CREST
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34
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Zhou Z, Hartmann M. Recent Progress in Biocatalysis with Enzymes Immobilized on Mesoporous Hosts. Top Catal 2012. [DOI: 10.1007/s11244-012-9905-0] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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35
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Shih YH, Lo SH, Yang NS, Singco B, Cheng YJ, Wu CY, Chang IH, Huang HY, Lin CH. Trypsin-Immobilized Metal-Organic Framework as a Biocatalyst In Proteomics Analysis. Chempluschem 2012. [DOI: 10.1002/cplu.201200186] [Citation(s) in RCA: 123] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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36
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Luk VN, Fiddes LK, Luk VM, Kumacheva E, Wheeler AR. Digital microfluidic hydrogel microreactors for proteomics. Proteomics 2012; 12:1310-8. [PMID: 22589180 DOI: 10.1002/pmic.201100608] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
Proteolytic digestion is an essential step in proteomic sample processing. While this step has traditionally been implemented in homogeneous (solution) format, there is a growing trend to use heterogeneous systems in which the enzyme is immobilized on hydrogels or other solid supports. Here, we introduce the use of immobilized enzymes in hydrogels for proteomic sample processing in digital microfluidic (DMF) systems. In this technique, preformed cylindrical agarose discs bearing immobilized trypsin or pepsin were integrated into DMF devices. A fluorogenic assay was used to optimize the covalent modification procedure for enzymatic digestion efficiency, with maximum efficiency observed at 31 μg trypsin in 2-mm diameter agarose gel discs. Gel discs prepared in this manner were used in an integrated method in which proteomic samples were sequentially reduced, alkylated, and digested, with all sample and reagent handling controlled by DMF droplet operation. Mass spectrometry analysis of the products revealed that digestion using the trypsin gel discs resulted in higher sequence coverage in model analytes relative to conventional homogenous processing. Proof-of-principle was demonstrated for a parallel digestion system in which a single sample was simultaneously digested on multiple gel discs bearing different enzymes. We propose that these methods represent a useful new tool for the growing trend toward miniaturization and automation in proteomic sample processing.
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Affiliation(s)
- Vivienne N Luk
- Department of Chemistry, University of Toronto, Toronto, ON, Canada
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37
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Rivera JG, Messersmith PB. Polydopamine-assisted immobilization of trypsin onto monolithic structures for protein digestion. J Sep Sci 2012; 35:1514-20. [DOI: 10.1002/jssc.201200073] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- José G. Rivera
- Biomedical Engineering Department; Northwestern University; Evanston IL USA
- Chemistry of Life Processes Institute; Northwestern University; Evanston IL USA
| | - Phillip B. Messersmith
- Biomedical Engineering Department; Northwestern University; Evanston IL USA
- Materials Science and Engineering Department; Northwestern University; Evanston IL USA
- Chemical and Biological Engineering Department; Northwestern University; Evanston IL USA
- Chemistry of Life Processes Institute; Northwestern University; Evanston IL USA
- Institute for Bionanotechnology in Medicine; Northwestern University; Chicago IL USA. Robert H. Lurie Comprehensive Cancer Center; Northwestern University; Chicago IL USA
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38
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Prikryl P, Lenfeld J, Horak D, Ticha M, Kucerova Z. Magnetic Bead Cellulose as a Suitable Support for Immobilization of α-Chymotrypsin. Appl Biochem Biotechnol 2012; 168:295-305. [DOI: 10.1007/s12010-012-9772-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2011] [Accepted: 06/06/2012] [Indexed: 10/28/2022]
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39
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Hinterwirth H, Lindner W, Lämmerhofer M. Bioconjugation of trypsin onto gold nanoparticles: effect of surface chemistry on bioactivity. Anal Chim Acta 2012; 733:90-7. [PMID: 22704381 DOI: 10.1016/j.aca.2012.04.036] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2012] [Revised: 04/19/2012] [Accepted: 04/24/2012] [Indexed: 11/15/2022]
Abstract
The systematic study of activity, long-time stability and auto-digestion of trypsin immobilized onto gold nanoparticles (GNPs) is described in this paper and compared to trypsin in-solution. Thereby, the influence of GNP's size and immobilization chemistry by various linkers differing in lipophilicity/hydrophilicity and spacer lengths was investigated with regard to the bioactivity of the conjugated enzyme. GNPs with different sizes were prepared by reduction and simultaneous stabilization with trisodium citrate and characterized by UV/vis spectra, dynamic light scattering (DLS), ζ-potential measurements and transmission electron microscopy (TEM). GNPs were derivatized by self-assembling of bifunctional thiol reagents on the nanoparticle (NP) surface via dative thiol-gold bond yielding a carboxylic acid functionalized surface. Trypsin was either attached directly via hydrophobic and ionic interactions onto the citrate stabilized GNPs or immobilized via EDC/NHS bioconjugation onto the carboxylic functionalized GNPs, respectively. The amount of bound trypsin was quantified by measuring the absorbance at 280 nm. The activity of bound enzyme and its Michaelis Menten kinetic parameter K(m) and v(max) were measured by the standard chromogenic substrate N(α)-Benzoyl-DL-arginine 4-nitroanilide hydrochloride (BApNA). Finally, digestion of a standard protein mixture with the trypsin-conjugated NPs followed by analysis with LC-ESI-MS and successful MASCOT search demonstrated the applicability of the new heterogenous nano-structured biocatalyst. It could be shown that the amount of immobilized trypsin and its activity can be increased by a factor of 6 using a long hydrophilic spacer with simultaneous reduced auto-digestion and reduced digestion time. The applicability of the new trypsin bioreactor was proven by digestion of casein and identification of α- as well as κ-casein by subsequent MASCOT search.
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Affiliation(s)
- Helmut Hinterwirth
- Department of Analytical Chemistry, University of Vienna, Währingerstrasse 38, 1090 Vienna, Austria
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40
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Chen Y, Wu M, Wang K, Chen B, Yao S, Zou H, Nie L. Vinyl functionalized silica hybrid monolith-based trypsin microreactor for on line digestion and separation via thiol-ene “click” strategy. J Chromatogr A 2011; 1218:7982-8. [DOI: 10.1016/j.chroma.2011.09.002] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2011] [Revised: 08/30/2011] [Accepted: 09/01/2011] [Indexed: 10/17/2022]
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41
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Preparing a metal-ion chelated immobilized enzyme reactor based on the polyacrylamide monolith grafted with polyethylenimine for a facile regeneration and high throughput tryptic digestion in proteomics. Anal Bioanal Chem 2011; 402:703-10. [DOI: 10.1007/s00216-011-5501-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2011] [Revised: 10/11/2011] [Accepted: 10/11/2011] [Indexed: 11/26/2022]
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42
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Vale G, Santos HM, Carreira RJ, Fonseca L, Miró M, Cerdà V, Reboiro-Jato M, Capelo JL. An assessment of the ultrasonic probe-based enhancement of protein cleavage with immobilized trypsin. Proteomics 2011; 11:3866-76. [PMID: 21805637 DOI: 10.1002/pmic.201100200] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2011] [Revised: 04/17/2011] [Accepted: 07/11/2011] [Indexed: 11/07/2022]
Abstract
The use of ultrasonic probe, in conjunction with immobilized trypsin, has been explored in this work for potential enhancement of protein digestion. Several solid supports commonly used to immobilize trypsin were subjected to different ultrasonication amplitudes and time in order to investigate their mechanical resistance to ultrasonic energy when provided by the ultrasonic probe. Glass beads and magnetic particles were found to remain intact in most conditions studied. It was found that immobilized trypsin cannot be reused after ultrasonication since the enzymatic activity was greatly diminished. For comparative purposes, vortex shaking was also explored for protein cleavage. Four standard proteins--bovine serum albumin, α-lactalbumin, carbonic anhydrase and ovalbumin--were successfully identified using peptide mass fingerprint, or peptide fragment fingerprint. In addition, the performance of the classical protein cleavage (overnight, 12 h) and the ultrasonic methods was found to be similar when the digestion of a complex proteome, human plasma, was assessed through 18-O quantification. The digestion yields found were 90-117% for the ultrasonic and 5-21% for the vortex when those methods were compared with the classical overnight digestion.
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Affiliation(s)
- Gonçalo Vale
- REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia da Universidade Nova de Lisboa, Monte da Caparica, Portugal
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43
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High-resolution separations of protein isoforms with liquid chromatography time-of-flight mass spectrometry using polymer monolithic capillary columns. J Chromatogr A 2011; 1218:5504-11. [DOI: 10.1016/j.chroma.2011.06.049] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2011] [Revised: 05/16/2011] [Accepted: 06/10/2011] [Indexed: 11/22/2022]
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44
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Savino R, Casadonte F, Terracciano R. In mesopore protein digestion: a new forthcoming strategy in proteomics. Molecules 2011; 16:5938-62. [PMID: 21765391 PMCID: PMC6264412 DOI: 10.3390/molecules16075938] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2011] [Revised: 07/07/2011] [Accepted: 07/13/2011] [Indexed: 01/11/2023] Open
Abstract
The conventional protocols for in solution or in gel protein digestion require many steps and long reaction times. The use of trypsin immobilized onto solid supports has recently captured the attention of many research groups, because these systems can speed-up protein digestion significantly. The utilization of new materials such as mesoporous silica as supports, in which enzyme and substrate are dramatically concentrated and confined in the nanospace, offers new opportunities to reduce the complexity of proteomics workflows. An overview of the procedures for in situ proteolysis of single proteins or complex protein mixtures is reported, with a special focus on porous materials used as catalysts. The challenging efforts for designing such systems aimed at mimicking the biochemistry of living cells are reviewed. Potentials, limitations and challenges of this branch of enzyme catalysis, which we indicate as in mesopore digestion, are discussed, in relation to its suitability for high-speed and high-throughput proteomics.
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Affiliation(s)
| | | | - Rosa Terracciano
- Author to whom correspondence should be addressed; ; Tel.: +39-0961-3694085; Fax: +39-0961-3694090
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45
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Chamrád I, Strouhal O, Řehulka P, Lenobel R, Šebela M. Microscale affinity purification of trypsin reduces background peptides in matrix-assisted laser desorption/ionization mass spectrometry of protein digests. J Proteomics 2011; 74:948-57. [DOI: 10.1016/j.jprot.2011.02.011] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2010] [Revised: 01/26/2011] [Accepted: 02/09/2011] [Indexed: 11/24/2022]
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46
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Wu S, Sun L, Ma J, Yang K, Liang Z, Zhang L, Zhang Y. High throughput tryptic digestion via poly (acrylamide-co-methylenebisacrylamide) monolith based immobilized enzyme reactor. Talanta 2011; 83:1748-53. [DOI: 10.1016/j.talanta.2010.12.011] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2010] [Revised: 11/23/2010] [Accepted: 12/04/2010] [Indexed: 11/15/2022]
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47
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Ma J, Hou C, Sun L, Tao D, Zhang Y, Shan Y, Liang Z, Zhang L, Yang L, Zhang Y. Coupling Formic Acid Assisted Solubilization and Online Immobilized Pepsin Digestion with Strong Cation Exchange and Microflow Reversed-Phase Liquid Chromatography with Electrospray Ionization Tandem Mass Spectrometry for Integral Membrane Proteome Analysis. Anal Chem 2010; 82:9622-5. [DOI: 10.1021/ac1023099] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Junfeng Ma
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Chunyan Hou
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Liangliang Sun
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Dingyin Tao
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Yanyan Zhang
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Yichu Shan
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Zhen Liang
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Lihua Zhang
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Ling Yang
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
| | - Yukui Zhang
- Key Laboratory of Separation Science for Analytical Chemistry, National Chromatographic Research and Analysis Center and Division of Biotechnology, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China and Graduate School of the Chinese Academy of Sciences, Beijing 100039, China
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48
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Casadonte F, Pasqua L, Savino R, Terracciano R. Smart Trypsin Adsorption into N-(2-Aminoethyl)-3-aminopropyl-Modified Mesoporous Silica for Ultra Fast Protein Digestion. Chemistry 2010; 16:8998-9001. [DOI: 10.1002/chem.201000120] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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49
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Dartiguenave C, Hamad H, Waldron KC. Immobilization of trypsin onto 1,4-diisothiocyanatobenzene-activated porous glass for microreactor-based peptide mapping by capillary electrophoresis: Effect of calcium ions on the immobilization procedure. Anal Chim Acta 2010; 663:198-205. [DOI: 10.1016/j.aca.2010.01.042] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2009] [Revised: 01/20/2010] [Accepted: 01/22/2010] [Indexed: 10/19/2022]
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50
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Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques. Anal Chim Acta 2009; 650:151-9. [DOI: 10.1016/j.aca.2009.07.034] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2009] [Revised: 07/14/2009] [Accepted: 07/15/2009] [Indexed: 11/19/2022]
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