Chemometric regression techniques as emerging, powerful tools in genetic association studies

Comparison of Various Signal Processing Techniques and Spectral Regions for the Direct Determination of Syrup Adulterants in Honey Using Fourier Transform Infrared Spectroscopy and Chemometrics

Honey consumption has become increasingly popular worldwide. However, the increase in demand for honey has also caused an increase in its adulteration, a deliberate fraud which involves adding of other substances to pure honey for economic purposes. This process not only lowers the quality of honey, but also has potential health risks, including high blood sugar, increased risk of diabetes, and weight gain. Herein, we develop an easy-to-use and direct method of quantifying corn, cane, beet, and rice syrup adulterants in honey using Fourier transform infrared spectroscopy and chemometrics. Various signal processing techniques, including derivatives, moving average, binning, Savitzky–Golay, and standard normal variate using the entire spectral region (3996–650 cm−1) and specific spectral region (1501–799 cm−1), were compared. Optimum results were obtained using first derivative signal processing for both the entire and specific spectral regions. The first derivative signal processing technique garnered the most optimum results using the specific spectral range (1501–799 cm−1) (RMSECVaverage = 0.021, RMSEPaverage = 0.014, R2average = 0.859) across all syrup adulterants. An exploratory analysis to assess the utility of this specific spectral region in pattern recognition of samples based on their adulterant content show that this region is effective in discriminating samples according to the presence or absence of honey syrup adulterants.

A Chemometric Approach Toward Predicting the Relative Aggregation Propensity: Aβ(1-42)

A number of algorithms have been developed to predict the aggregation propensity of peptides and proteins, but virtually none have the ability to provide sequence-specific information on what physicochemical properties are most important in altering aggregation propensity. In this study, a chemometric approach using reduced amino acid properties is used to examine the aggregation behavior of a highly amyloidogenic peptide, Aβ(1-42). Specific residues are identified as being critical to the aggregation process. At each of these positions, the important physicochemical properties are identified that would either accelerate or inhibit fibril formation.

MIR-biospectroscopy coupled with chemometrics in cancer studies

This review focuses on chemometric techniques applied in MIR-biospectroscopy for cancer diagnosis and analysis over the last ten years of research. Experimental applications of chemometrics coupled with biospectroscopy are discussed throughout this work. The advantages and drawbacks of this association are also highlighted. Chemometric algorithms are evidenced as a powerful tool for cancer diagnosis, classification, and in different matrices. In fact, it is shown how chemometrics can be implemented along all different types of cancer analyses.

Trends in Chemometrics: Food Authentication, Microbiology, and Effects of Processing

In the last decade, the use of multivariate statistical techniques developed for analytical chemistry has been adopted widely in food science and technology. Usually, chemometrics is applied when there is a large and complex dataset, in terms of sample numbers, types, and responses. The results are used for authentication of geographical origin, farming systems, or even to trace adulteration of high value-added commodities. In this article, we provide an extensive practical and pragmatic overview on the use of the main chemometrics tools in food science studies, focusing on the effects of process variables on chemical composition and on the authentication of foods based on chemical markers. Pattern recognition methods, such as principal component analysis and cluster analysis, have been used to associate the level of bioactive components with in vitro functional properties, although supervised multivariate statistical methods have been used for authentication purposes. Overall, chemometrics is a useful aid when extensive, multiple, and complex real-life problems need to be addressed in a multifactorial and holistic context. Undoubtedly, chemometrics should be used by governmental bodies and industries that need to monitor the quality of foods, raw materials, and processes when high-dimensional data are available. We have focused on practical examples and listed the pros and cons of the most used chemometric tools to help the user choose the most appropriate statistical approach for analysis of complex and multivariate data.

Three-point multivariate calibration models by correlation constrained MCR-ALS: A feasibility study for quantitative analysis of complex mixtures

When it comes to address quantitative analysis in complex mixtures, Partial Least Squares (PLS) is often referred to as a standard first-order multivariate calibration method. The set of samples used to build the PLS regression model should ideally be large and representative to produce reliable predictions. In practice, however, the large number of calibration samples is not always affordable and the choice of these samples should be handled with care as it can significantly affect the accuracy of the predictive model. Correlation constrained multivariate curve resolution (CC-MCR) is an alternative regression method for first-order datasets where, unlike PLS, calibration and prediction stages are performed iteratively and optimized under constraints until the decomposition meets the convergence criterion. Both calibration and test samples are fitted into a unique bilinear model so that the number of calibration samples is no longer a critical issue. In this paper we demonstrate that under certain conditions CC-MCR models can provide for reasonable predictions in quantitative analysis of complex mixtures even when only three calibration samples are employed. The latter are defined as samples having the minimum, the maximum and the average concentration, providing for a simple and rapid strategy to build reliable calibration model. The feasibility of three-point multivariate calibration approach was assessed with several case studies featuring mixtures of different analytes in presence of interfering species. Satisfactory predictions with relative errors in the range 3-15% were achieved and good agreement with classical PLS models built from a larger set of calibration samples was observed.