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Ndiaye M, Badji A, Dieng I, Dolgova AS, Mhamadi M, Kirichenko AD, Gladkikh AS, Gaye A, Faye O, Sall AA, Diallo M, Dedkov VG, Faye O. Molecular Detection and Genetic Characterization of Two Dugbe Orthonairovirus Isolates Detected from Ticks in Southern Senegal. Viruses 2024; 16:964. [PMID: 38932256 PMCID: PMC11209035 DOI: 10.3390/v16060964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 06/07/2024] [Accepted: 06/11/2024] [Indexed: 06/28/2024] Open
Abstract
Dugbe virus (DUGV) is a tick-borne arbovirus first isolated in Nigeria in 1964. It has been detected in many African countries using such diverse methods as serological tests, virus isolation, and molecular detection. In Senegal, reports of DUGV isolates mainly occurred in the 1970s and 1980s. Here, we report a contemporary detection of three novel DUGV isolates upon screening of a total of 2877 individual ticks regrouped into 844 pools. The three positive pools were identified as Amblyomma variegatum, the main known vector of DUGV, collected in the southern part of the country (Kolda region). Interestingly, phylogenetic analysis indicates that the newly sequenced isolates are globally related to the previously characterized isolates in West Africa, thus highlighting potentially endemic, unnoticed viral transmission. This study was also an opportunity to develop a rapid and affordable protocol for full-genome sequencing of DUGV using nanopore technology. The results suggest a relatively low mutation rate and relatively conservative evolution of DUGV isolates.
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Affiliation(s)
- Mignane Ndiaye
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Aminata Badji
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Idrissa Dieng
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Anna S. Dolgova
- St. Petersburg Pasteur Institute, Federal Service for Consumer Rights Protection and Human Well-Being Surveillance, 197101 St. Petersburg, Russia
| | - Moufid Mhamadi
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Anastasiia D. Kirichenko
- St. Petersburg Pasteur Institute, Federal Service for Consumer Rights Protection and Human Well-Being Surveillance, 197101 St. Petersburg, Russia
| | - Anna S. Gladkikh
- St. Petersburg Pasteur Institute, Federal Service for Consumer Rights Protection and Human Well-Being Surveillance, 197101 St. Petersburg, Russia
| | - Alioune Gaye
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Ousmane Faye
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Amadou Alpha Sall
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Mawlouth Diallo
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
| | - Vladimir G. Dedkov
- St. Petersburg Pasteur Institute, Federal Service for Consumer Rights Protection and Human Well-Being Surveillance, 197101 St. Petersburg, Russia
- Martsinovsky Institute of Medical Parasitology, Tropical and Vector Borne Diseases, Sechenov First Moscow State Medical University, 119991 Moscow, Russia
| | - Oumar Faye
- Institut Pasteur de Dakar, 36 Avenue Pasteur, BP 220, Dakar 12000, Senegal
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DIALLO AS, NGOM M, MBACKÉ DAFFE SM, BASSÈNE H, SAMBOU M, DIEYE Y, FALL B, SOKHNA C. [Contribution of qPCR to the diagnosis of cervico-vaginal infections at the Hôpital Principal de Dakar, Senegal]. MEDECINE TROPICALE ET SANTE INTERNATIONALE 2024; 4:mtsi.v4i1.2024.298. [PMID: 38846122 PMCID: PMC11151913 DOI: 10.48327/mtsi.v4i1.2024.298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 12/12/2023] [Indexed: 06/09/2024]
Abstract
Objective To determine the etiology of cervico-vaginal infections by cytobacteriology and the efficacy of qPCR for the diagnosis of sensitive strains such as Streptococcus agalactiae, Borrelia crocidurae, Chlamydia trachomatis, Neisseria gonorrhoeae and Treponema pallidum. Methodology This prospective cross-sectional study was performed between January and September 2021 in 346 women who were examined for cervico-vaginal infection at the Hôpital Principal de Dakar (HPD). Cytobacteriological (direct examination, agar culture) and molecular analyses were performed. Results Vaginal flora imbalances predominated, with a rate of 72.3%. The proportion of type IV vaginal flora was 46.5%. Of the 199 germs isolated, Candida albicans (25.1%), Ureaplasma urealyticum (17.6%), S. agalactiae (7.8%), Gardnerella vaginalis (6.6%) and nonalbicans Candida (5.5%) were the main pathogens responsible for cervico-vaginal infections in patients. Among women tested for mycoplasma, U. urealyticum was identified in 43.3% of patients. Among those tested for C. trachomatis, the proportion of infected women was low (4%). The prevalence of C. albicans was higher in pregnant women (38.3%) than in nonpregnant women (19.2%). S. agalactiae strains showed high resistance to certain beta-lactam antibiotics (pristinamycin 100%, gentamycin 100%, ampicillin 92.5% and cefalotin 85.2%) and to a glycopeptide antibiotic (vancomycin 100%). The Staphylococcus aureus strain had good sensitivity to antibiotics except gentamycin (100%) and kanamycin (100%). The enterobacteria tested were all sensitive to phenicols, carbapenems, cephalosporins and aminoglycosides. However, E. coli showed high resistance to tetracycline. The different methods showed low prevalences of C. trachomatis and N. gonorrhoeae, so comparisons Test RapidChlamydia/qPCR for C. trachomatis and culture/qPCR for N. gonorrhoeae were not possible. For S. agalactiae, on the other hand, qPCR was more advantageous than culture. The χ2 test showed a significant difference (Yates χ2 = 33.77 and p = 1-7) for the diagnosis of S. agalactiae. S. agalactiae qPCR had a sensitivity of 40.7%, a specificity of 94%, and positive and negative predictive values of 36.7% and 94.9% respectively, as well as a kappa = 0.33. Conclusion The methods applied enabled us to identify the pathogens that cause cervicovaginal infections. The results suggest that qPCR may be an alternative, at least for the diagnosis of S. agalactiae. However, culture remains indispensable for studying antibiotic sensitivity. In order to improve patient care, molecular techniques need to be integrated into the HPD testing toolbox. To broaden the repertoire of pathogens to be diagnosed by qPCR, targeted comparison studies will be needed to increase the probability of encountering infected individuals.
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Affiliation(s)
- Aminata Sarif DIALLO
- Département PCL/Sciences, Institut supérieur des sciences de l’éducation de Guinée, Sénégal
- Service de biologie, Département formation des professeurs de collège et lycée Sciences fondamentales et des animateurs pédagogiques de l'enseignement secondaire (DFPCL-SF/APES), Institut supérieur des sciences de l’éducation de Guinée, Fédération des laboratoires, Hôpital Principal de Dakar, Sénégal
| | - Mor NGOM
- Service de biologie, Département formation des professeurs de collège et lycée Sciences fondamentales et des animateurs pédagogiques de l'enseignement secondaire (DFPCL-SF/APES), Institut supérieur des sciences de l’éducation de Guinée, Fédération des laboratoires, Hôpital Principal de Dakar, Sénégal
| | - Sokhna Moumy MBACKÉ DAFFE
- Service de biologie, Département formation des professeurs de collège et lycée Sciences fondamentales et des animateurs pédagogiques de l'enseignement secondaire (DFPCL-SF/APES), Institut supérieur des sciences de l’éducation de Guinée, Fédération des laboratoires, Hôpital Principal de Dakar, Sénégal
| | - Hubert BASSÈNE
- UMR 257 Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus international IRD-UCAD, Dakar, Sénégal
| | - Masse SAMBOU
- UMR 257 Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus international IRD-UCAD, Dakar, Sénégal
| | - Yakhya DIEYE
- Pôle de microbiologie, Institut Pasteur de Dakar, Sénégal Auteur
| | - Bécaye FALL
- Service de biologie, Département formation des professeurs de collège et lycée Sciences fondamentales et des animateurs pédagogiques de l'enseignement secondaire (DFPCL-SF/APES), Institut supérieur des sciences de l’éducation de Guinée, Fédération des laboratoires, Hôpital Principal de Dakar, Sénégal
| | - Cheikh SOKHNA
- UMR 257 Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus international IRD-UCAD, Dakar, Sénégal
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Majid A, Almutairi MM, Alouffi A, Tanaka T, Yen TY, Tsai KH, Ali A. First report of spotted fever group Rickettsia aeschlimannii in Hyalomma turanicum, Haemaphysalis bispinosa, and Haemaphysalis montgomeryi infesting domestic animals: updates on the epidemiology of tick-borne Rickettsia aeschlimannii. Front Microbiol 2023; 14:1283814. [PMID: 38163073 PMCID: PMC10756324 DOI: 10.3389/fmicb.2023.1283814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2023] [Accepted: 11/13/2023] [Indexed: 01/03/2024] Open
Abstract
Tick-borne Rickettsia spp. have long been known as causative agents for zoonotic diseases. We have previously characterized Rickettsia spp. in different ticks infesting a broad range of hosts in Pakistan; however, knowledge regarding Rickettsia aeschlimannii in Haemaphysalis and Hyalomma ticks is missing. This study aimed to obtain a better understanding about R. aeschlimannii in Pakistan and update the knowledge about its worldwide epidemiology. Among 369 examined domestic animals, 247 (66%) were infested by 872 ticks. Collected ticks were morphologically delineated into three genera, namely, Rhipicephalus, Hyalomma, and Haemaphysalis. Adult females were the most prevalent (number ₌ 376, 43.1%), followed by nymphs (303, 34.74%) and males (193, 22.13%). Overall, genomic DNA samples of 223 tick were isolated and screened for Rickettsia spp. by the amplification of rickettsial gltA, ompA, and ompB partial genes using conventional PCR. Rickettsial DNA was detected in 8 of 223 (3.58%) ticks including nymphs (5 of 122, 4.0%) and adult females (3 of 86, 3.48%). The rickettsial gltA, ompA, and ompB sequences were detected in Hyalomma turanicum (2 nymphs and 1 adult female), Haemaphysalis bispinosa (1 nymph and 1 adult female), and Haemaphysalis montgomeryi (2 nymphs and 1 adult female). These rickettsial sequences showed 99.71-100% identity with R. aeschlimannii and phylogenetically clustered with the same species. None of the tested Rhipicephalus microplus, Hyalomma isaaci, Hyalomma scupense, Rhipicephalus turanicus, Hyalomma anatolicum, Rhipicephalus haemaphysaloides, Rhipicephalus sanguineus, Haemaphysalis cornupunctata, and Haemaphysalis sulcata ticks were found positive for rickettsial DNA. Comprehensive surveillance studies should be adopted to update the knowledge regarding tick-borne zoonotic Rickettsia species, evaluate their risks to humans and livestock, and investigate the unexamined cases of illness after tick bite among livestock holders in the country.
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Affiliation(s)
- Abdul Majid
- Department of Zoology, Abdul Wali Khan University Mardan, Mardan, Pakistan
| | - Mashal M. Almutairi
- Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, Riyadh, Saudi Arabia
| | - Abdulaziz Alouffi
- King Abdulaziz City for Science and Technology, Riyadh, Saudi Arabia
| | - Tetsuya Tanaka
- Laboratory of Infectious Diseases, Joint Faculty of Veterinary Medicine, Kagoshima University, Kagoshima, Japan
| | - Tsai-Ying Yen
- Department of Public Health, Institute of Environmental and Occupational Health Sciences, College of Public Health, National Taiwan University, Taipei, Taiwan
| | - Kun-Hsien Tsai
- Department of Public Health, Institute of Environmental and Occupational Health Sciences, College of Public Health, National Taiwan University, Taipei, Taiwan
| | - Abid Ali
- Department of Zoology, Abdul Wali Khan University Mardan, Mardan, Pakistan
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Onyiche TE, MacLeod ET. Hard ticks (Acari: Ixodidae) and tick-borne diseases of sheep and goats in Africa: A review. Ticks Tick Borne Dis 2023; 14:102232. [PMID: 37531888 DOI: 10.1016/j.ttbdis.2023.102232] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 07/10/2023] [Accepted: 07/11/2023] [Indexed: 08/04/2023]
Abstract
Ticks are leading vectors of economically important pathogens that affect small ruminants due to favourable climatic conditions across different regions of the African continent. They are responsible for both direct and indirect economic losses in the livestock industry. This review focuses on the species diversity of hard ticks, their biology, tick-borne diseases of sheep and goats including non-infectious disease, and risk factors to tick infestation in Africa. Furthermore, our review provides recent updates on distribution of ticks and tick-borne pathogens of small ruminants in Africa. It was observed that several species and subspecies of hard ticks belonging to the genera Hyalomma (Hy), Rhipicephalus (Rh), Ixodes (I) and Amblyomma (Am) were found infesting small ruminants across the different regions of the continent. Of these genera, Rhipicephalus ticks accounts for the majority of the registered species, with exactly 27 different species infesting small ruminant stocks comprising of different developmental instars and adults of the tick. Rhipicephalus decolaratus, Rh. e. evertsi and Rh. appendiculatus were the three most common Rhipicephalus species reported. Both protozoal (Babesia and Theileria) and bacterial (Anaplasma, Rickettsia, Ehrlichia, Coxiella and Mycoplasma) pathogens have being reported to be amplified in several hard tick species and/or small ruminant hosts. Furthermore, tick paralysis and lameness were non-infectious conditions attributed to tick infestations. Amblyomma hebraeum and Rh. glabroscutatum may cause lameness in goats, while Hy. rufipes is responsible for the same condition in Merino sheep. Host paralysis due to a neurotoxin released by female Rh. e. evertsi and I. rubicundus has been documented within the continent. We therefore advocate for the need of integrated control measures against tick-borne pathogens (TBPs) including their arthropod vectors, to be performed simultaneously to ease the burden of vector-borne diseases in small ruminant production.
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Affiliation(s)
- ThankGod E Onyiche
- Deanery of Biomedical Sciences, Edinburgh Medical School, College of Medicine and Veterinary Medicine, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, UK; Department of Veterinary Parasitology and Entomology, University of Maiduguri, P. M. B. 1069, Maiduguri, Nigeria; Unit for Environmental Sciences and Management, North-West University, Potchefstroom Campus, Private Bag X6001, Potchefstroom 2520, South Africa.
| | - Ewan Thomas MacLeod
- Deanery of Biomedical Sciences, Edinburgh Medical School, College of Medicine and Veterinary Medicine, The University of Edinburgh, 1 George Square, Edinburgh EH8 9JZ, UK
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Diarra AZ, Kelly P, Davoust B, Parola P. Tick-Borne Diseases of Humans and Animals in West Africa. Pathogens 2023; 12:1276. [PMID: 38003741 PMCID: PMC10675719 DOI: 10.3390/pathogens12111276] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2023] [Revised: 10/11/2023] [Accepted: 10/13/2023] [Indexed: 11/26/2023] Open
Abstract
Ticks are a significant group of arthropod vectors that transmit a large variety of pathogens responsible for human and animal diseases worldwide. Ticks are the second biggest transmitters of vector-borne diseases, behind mosquitoes. However, in West Africa, there is often only limited knowledge of tick-borne diseases. With the scarcity of appropriate diagnostic services, the prevalence of tick-borne diseases is generally underestimated in humans. In this review, we provide an update on tick-borne pathogens reported in people, animals and ticks in West Africa by microscopic, immunological and molecular methods. A systematic search was conducted in PubMed and Google Scholar. The selection criteria included all studies conducted in West Africa reporting the presence of Rickettsia, Borrelia, Anaplasma, Ehrlichia, Bartonella, Coxiella burnetii, Theileria, Babesia, Hepatozoon and Crimean-Congo haemorrhagic fever viruses in humans, animals or ticks. Our intention is to raise awareness of tick-borne diseases amongst human and animal health workers in West Africa, and also physicians working with tourists who have travelled to the region.
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Affiliation(s)
- Adama Zan Diarra
- IHU-Méditerranée Infection, 13005 Marseille, France; (A.Z.D.); (B.D.)
- Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, 13005 Marseille, France
| | - Patrick Kelly
- Ross University School of Veterinary Medicine, Basseterre P.O. Box 334, Saint Kitts and Nevis;
| | - Bernard Davoust
- IHU-Méditerranée Infection, 13005 Marseille, France; (A.Z.D.); (B.D.)
- Aix Marseille Univ, IRD, AP-HM, MEPHI, 13005 Marseille, France
| | - Philippe Parola
- IHU-Méditerranée Infection, 13005 Marseille, France; (A.Z.D.); (B.D.)
- Aix Marseille Univ, IRD, AP-HM, SSA, VITROME, 13005 Marseille, France
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Distribution and Prevalence of Anaplasmataceae, Rickettsiaceae and Coxiellaceae in African Ticks: A Systematic Review and Meta-Analysis. Microorganisms 2023; 11:microorganisms11030714. [PMID: 36985288 PMCID: PMC10051480 DOI: 10.3390/microorganisms11030714] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 03/06/2023] [Accepted: 03/08/2023] [Indexed: 03/12/2023] Open
Abstract
In Africa, ticks continue to be a major hindrance to the improvement of the livestock industry due to tick-borne pathogens that include Anaplasma, Ehrlichia, Rickettsia and Coxiella species. A systemic review and meta-analysis were conducted here and highlighted the distribution and prevalence of these tick-borne pathogens in African ticks. Relevant publications were searched in five electronic databases and selected using inclusion/exclusion criteria, resulting in 138 and 78 papers included in the qualitative and quantitative analysis, respectively. Most of the studies focused on Rickettsia africae (38 studies), followed by Ehrlichia ruminantium (27 studies), Coxiella burnetii (20 studies) and Anaplasma marginale (17 studies). A meta-analysis of proportions was performed using the random-effects model. The highest prevalence was obtained for Rickettsia spp. (18.39%; 95% CI: 14.23–22.85%), R. africae (13.47%; 95% CI: 2.76–28.69%), R. conorii (11.28%; 95% CI: 1.77–25.89%), A. marginale (12.75%; 95% CI: 4.06–24.35%), E. ruminantium (6.37%; 95% CI: 3.97–9.16%) and E. canis (4.3%; 95% CI: 0.04–12.66%). The prevalence of C. burnetii was low (0%; 95% CI: 0–0.25%), with higher prevalence for Coxiella spp. (27.02%; 95% CI: 10.83–46.03%) and Coxiella-like endosymbionts (70.47%; 95% CI: 27–99.82%). The effect of the tick genera, tick species, country and other variables were identified and highlighted the epidemiology of Rhipicephalus ticks in the heartwater; affinity of each Rickettsia species for different tick genera; dominant distribution of A. marginale, R. africae and Coxiella-like endosymbionts in ticks and a low distribution of C. burnetii in African hard ticks.
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Onyiche TE, Labruna MB, Saito TB. Unraveling the epidemiological relationship between ticks and rickettsial infection in Africa. FRONTIERS IN TROPICAL DISEASES 2022. [DOI: 10.3389/fitd.2022.952024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Tick-borne rickettsioses are emerging and re-emerging diseases of public health concern caused by over 30 species of Rickettsia. Ticks are obligate hematophagous arthropods with over 700 species of Ixodid ticks known worldwide. The escalating geographical dispersal of tick vectors and concomitant increase in the incidences of tick-borne diseases have fueled interest in the ecology of tick-borne pathogens. This review focuses on aspects of the Rickettsia pathogen, including biology, taxonomy, phylogeny, genetic diversity, epidemiology of the disease, and the role of vertebrate host in the perpetuation of rickettsioses in Africa. Our review also highlights some of the species of Rickettsia that are responsible for disease, the role of tick vectors (both hard and soft ticks) and the species of Rickettsia associated with diverse tick species across the continent. Additionally, this article emphasizes the evolutionary perspective of rickettsiae perpetuation and the possible role of amplifying vertebrate host and other small mammals, domestic animals and wildlife in the epidemiology of Rickettsia species. We also specifically, discussed the role of avian population in the epidemiology of SFG rickettsiae. Furthermore, we highlighted tick-borne rickettsioses among travelers due to African tick-bite fever (ATBF) and the challenges to surveillance of rickettsial infection, and research on rickettsiology in Africa. Our review canvasses the need for more rickettsiologists of African origin based within the continent to further research towards understanding the biology, characterization, and species distribution, including the competent tick vectors involved in their transmission of rickettsiae across the continent in collaboration with established researchers in western countries. We further highlighted the need for proper funding to encourage research despite competing demands for resources across the various sectors. We finalize by discussing the similarities between rickettsial diseases around the world and which steps need to be taken to help foster our understanding on the eco-epidemiology of rickettsioses by bridging the gap between the growing epidemiological data and the molecular characterization of Rickettsia species.
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Yessinou RE, Cazan CD, Bonnet SI, Farougou S, Mihalca AD. Geographical distribution of hard ticks (Acari:Ixodidae) and tick-host associations in Benin, Burkina-Faso, Ivory-Coast and Togo. Acta Trop 2022; 232:106510. [PMID: 35568068 DOI: 10.1016/j.actatropica.2022.106510] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 05/03/2022] [Accepted: 05/09/2022] [Indexed: 12/25/2022]
Abstract
Knowledge of ticks and associated pathogens is crucial to assess the risk of exposure of humans and animals to pathogens. For this review, we collected relevant data from published articles and field collections to provide an update on the biodiversity of ticks, and tick-host associations in four countries of West Africa: Benin, Burkina-Faso, Ivory-Coast, and Togo. The literature review was done according to Preferred Reporting Items for Systematic Reviews and Meta-Analysis (PRISMA) guidelines. The search was limited to literature published from 1953 to 2021 in English and French sources. Out of 104 articles retrieved, only 41 studies met the eligibility criteria and were included in the review. The final database included a total of 53,619 adults, nymphs and larval ticks belonging to 24 species and five genera (Amblyomma, Haemaphysalis, Hyalomma, Ixodes and Rhipicephalus) that were collected from 23 different species of wild and domestic animals. This is the first record of Ixodes aulacodi and Rhipicephalus simpsoni in Benin, together with two new host records for A. latum. This checklist allows an update on tick-host associations and provides information on the diversity of ticks in West Africa.
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Affiliation(s)
- Roland Eric Yessinou
- Communicable Disease Research Unit (URMaT), University of Abomey-Calavi, Cotonou, Benin, 01 Po. Box: 2009, Cotonou, Benin.
| | - Cristina Daniela Cazan
- Department of Parasitology and Parasitic Diseases, University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca, 3-5 Calea Mănăştur, 400372, Cluj-Napoca, Romania; CDS-9 Molecular Biology and Veterinary Parasitology Unit, University of Agricultural Sciences and Veterinary Medicine Cluj-Napoca, 3-5 Calea Mănăştur, 400372, Cluj-Napoca, Romania
| | - Sarah Irène Bonnet
- Functional Genetics of Infectious Diseases Unit, Institut Pasteur, CNRS UMR 2000, Université de Paris, 75015, Paris, France; Animal Health Department, INRAE, 37380, Nouzilly, France
| | - Souaïbou Farougou
- Communicable Disease Research Unit (URMaT), University of Abomey-Calavi, Cotonou, Benin, 01 Po. Box: 2009, Cotonou, Benin
| | - Andrei Daniel Mihalca
- Department of Parasitology and Parasitic Diseases, University of Agricultural Sciences and Veterinary Medicine of Cluj-Napoca, 3-5 Calea Mănăştur, 400372, Cluj-Napoca, Romania
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Pillay A, Manyangadze T, Mukaratirwa S. Prevalence of Rickettsia africae in tick vectors collected from mammalian hosts in sub-Saharan Africa: A systematic review and meta-analysis. Ticks Tick Borne Dis 2022; 13:101960. [DOI: 10.1016/j.ttbdis.2022.101960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2021] [Revised: 04/08/2022] [Accepted: 04/21/2022] [Indexed: 11/29/2022]
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Abdullah HHAM, Amanzougaghene N, Dahmana H, Louni M, Raoult D, Mediannikov O. Multiple vector-borne pathogens of domestic animals in Egypt. PLoS Negl Trop Dis 2021; 15:e0009767. [PMID: 34587171 PMCID: PMC8480906 DOI: 10.1371/journal.pntd.0009767] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 08/26/2021] [Indexed: 11/19/2022] Open
Abstract
Vector Borne Diseases (VBDs) are considered emerging and re-emerging diseases that represent a global burden. The aim of this study was to explore and characterize vector-borne pathogens in different domestic animal hosts in Egypt. A total of 557 blood samples were collected from different animals using a convenience sampling strategy (203 dogs, 149 camels, 88 cattle, 26 buffaloes, 58 sheep and 33 goats). All samples were tested for multiple pathogens using quantitative PCR and standard PCR coupled with sequencing. We identified Theileria annulata and Babesia bigemina in cattle (15.9 and 1.1%, respectively), T. ovis in sheep and buffaloes (8.6 and 7.7%, respectively) and Ba. canis in dogs (0.5%) as well as Anaplasma marginale in cattle, sheep and camels (20.4, 3.4 and 0.7%, respectively) and Coxiella burnetii in sheep and goats (1.7 and 3%; respectively). New genotypes of An. centrale, An. ovis, An. platys-like and Borrelia theileri were found in cattle (1.1,3.4, 3.4 and 3.4%, respectively), An. platys-like in buffaloes (7.7%), An. marginale, An. ovis, An. platys-like and Bo. theileri in sheep (3.4, 1.7, 1.7 and 3.4%, respectively), An. platys, An. platys-like and Setaria digitata in camels (0.7, 5.4 and 0.7%, respectively) and Rickettsia africae-like, An. platys, Dirofilaria repens and Acanthocheilonema reconditum in dogs (1.5, 3.4, 1 and 0.5%, respectively). Co-infections were found in cattle, sheep and dogs (5.7, 1.7, 0.5%, respectively). For the first time, we have demonstrated the presence of several vector-borne zoonoses in the blood of domestic animals in Egypt. Dogs and ruminants seem to play a significant role in the epidemiological cycle of VBDs.
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Affiliation(s)
- Hend H. A. M. Abdullah
- Department of Parasitology and Animal Diseases, Veterinary Research Division, National Research Centre, Dokki, Giza, Egypt
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Nadia Amanzougaghene
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Handi Dahmana
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Meriem Louni
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Didier Raoult
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
| | - Oleg Mediannikov
- Aix Marseille Univ, IRD, AP-HM, MEPHI, IHU-Méditerranée Infection, Marseille, France
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11
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Temur AI, Kuhn JH, Pecor DB, Apanaskevich DA, Keshtkar-Jahromi M. Epidemiology of Crimean-Congo Hemorrhagic Fever (CCHF) in Africa-Underestimated for Decades. Am J Trop Med Hyg 2021; 104:1978-1990. [PMID: 33900999 PMCID: PMC8176481 DOI: 10.4269/ajtmh.20-1413] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2020] [Accepted: 02/09/2021] [Indexed: 01/15/2023] Open
Abstract
Crimean-Congo hemorrhagic fever (CCHF) is endemic in Africa, but the epidemiology remains to be defined. Using a broad database search, we reviewed the literature to better define CCHF evidence in Africa. We used a One Health approach to define the impact of CCHF by reviewing case reports, human and animal serology, and records of CCHF virus (CCHFV) isolations (1956-mid-2020). In addition, published and unpublished collection data were used to estimate the geographic distribution of Hyalomma ticks and infection vectors. We implemented a previously proposed classification scheme for organizing countries into five categories by the level of evidence. From January 1, 1956 to July 25, 2020, 494 CCHF cases (115 lethal) were reported in Africa. Since 2000, nine countries (Kenya, Mali, Mozambique, Nigeria, Senegal, Sierra Leone, South Sudan, Sudan, and Tunisia) have reported their first CCHF cases. Nineteen countries reported CCHF cases and were assigned level 1 or level 2 based on maturity of their surveillance system. Thirty countries with evidence of CCHFV circulation in the absence of CCHF cases were assigned level 3 or level 4. Twelve countries for which no data were available were assigned level 5. The goal of this review is to inform international organizations, local governments, and healthcare professionals about shortcomings in CCHF surveillance in Africa to assist in a movement toward strengthening policy to improve CCHF surveillance.
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Affiliation(s)
- Ahmet Irfan Temur
- Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, Maryland
- Bezmialem Vakif University, Istanbul, Turkey
| | - Jens H. Kuhn
- Integrated Research Facility, Division of Clinical Research, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, Maryland
| | - David B. Pecor
- Department of Entomology, Walter Reed Biosystematics Unit, Smithsonian Institution, Suitland, Maryland
- Department of Entomology, Walter Reed Army Institute of Research, Silver Spring, Maryland
| | - Dmitry A. Apanaskevich
- US National Tick Collection, The James H. Oliver Jr. Institute for Coastal Plain Science, Georgia Southern University, Statesboro, Georgia
| | - Maryam Keshtkar-Jahromi
- Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, Maryland
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12
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Ndiaye EHI, Diouf FS, Ndiaye M, Bassene H, Raoult D, Sokhna C, Parola P, Diatta G. Tick-borne relapsing fever Borreliosis, a major public health problem overlooked in Senegal. PLoS Negl Trop Dis 2021; 15:e0009184. [PMID: 33886571 PMCID: PMC8096072 DOI: 10.1371/journal.pntd.0009184] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Revised: 05/04/2021] [Accepted: 01/27/2021] [Indexed: 12/14/2022] Open
Abstract
BACKGROUND Tick-borne relapsing fever (TBRF) is the most common vector-borne bacterial disease in humans in West Africa. It is frequently clinically confused with malaria. Our study aims to determine, on a micro-geographic scale, the conditions for the maintenance and spread of TBRF in the Niakhar district of Senegal. METHODOLOGY/PRINCIPAL FINDINGS We conducted clinical, entomological and animal reservoir investigations. Field surveys were carried out in order to investigate the presence of Ornithodoros sonrai vector ticks and to detect Borrelia spp. by qPCR using the 16S rRNA and glpQ genes, respectively. Micromammal trapping series were carried out inside homes and Borrelia infection was detected using brain tissue qPCR. Capillary blood samples from febrile patients were also tested for Borrelia using qPCR. More than 97% (40/41) of the villages surveyed were infested with O. sonrai ticks. The prevalence of Borrelia spp. infections in ticks was 13% (116/910), and over 73% (85/116) were positively confirmed as being Borrelia crocidurae. Borreliosis cases accounted for 12% (94/800) of episodes of fever and all age groups were infected, with children and young people between the ages of 8-14 and 22-28 being the most infected by the disease (16% and 18.4%). TBRF cases occurred in all seasons, with a peak in August. In two species of small rodents that were found to be infected (Arvicanthis niloticus, Mus musculus), the proportion of Borrelia infection was 17.5% (10/57), and the highest prevalence of infection (40.9%, 9/22) was observed in A. niloticus. CONCLUSION/SIGNIFICANCE Our study indicates that TBRF is an endemic disease in the Niakhar district, where children and young people are the most infected. Arvicanthis niloticus and O. sonrai ticks are massively present and appear to be the main epidemiological reservoirs causing its extensive spread to humans.
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Affiliation(s)
- El Hadji Ibrahima Ndiaye
- Aix Marseille Univ, IRD, APHM, SSA, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | | | - Mady Ndiaye
- Laboratoire d’Entomologie, Bactériologie, Rickettsiologie, Virologie, Département de Biologie Animale, Faculté des Sciences et Techniques, Université Cheikh Anta Diop de Dakar, Dakar, Senegal
| | - Hubert Bassene
- Aix Marseille Univ, IRD, APHM, SSA, VITROME, Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
| | - Didier Raoult
- IHU Méditerranée Infection, Marseille, France
- Aix Marseille Univ, IRD, APHM, MEPHI, Marseille, France
| | - Cheikh Sokhna
- Aix Marseille Univ, IRD, APHM, SSA, VITROME, Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
| | - Philippe Parola
- Aix Marseille Univ, IRD, APHM, SSA, VITROME, Marseille, France
- IHU Méditerranée Infection, Marseille, France
| | - Georges Diatta
- Aix Marseille Univ, IRD, APHM, SSA, VITROME, Marseille, France
- VITROME, Campus International IRD-UCAD Hann, Dakar, Senegal
- * E-mail:
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13
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Piotrowski M, Rymaszewska A. Expansion of Tick-Borne Rickettsioses in the World. Microorganisms 2020; 8:E1906. [PMID: 33266186 PMCID: PMC7760173 DOI: 10.3390/microorganisms8121906] [Citation(s) in RCA: 44] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Revised: 10/30/2020] [Accepted: 11/25/2020] [Indexed: 12/28/2022] Open
Abstract
Tick-borne rickettsioses are caused by obligate intracellular bacteria belonging to the spotted fever group of the genus Rickettsia. These infections are among the oldest known diseases transmitted by vectors. In the last three decades there has been a rapid increase in the recognition of this disease complex. This unusual expansion of information was mainly caused by the development of molecular diagnostic techniques that have facilitated the identification of new and previously recognized rickettsiae. A lot of currently known bacteria of the genus Rickettsia have been considered nonpathogenic for years, and moreover, many new species have been identified with unknown pathogenicity. The genus Rickettsia is distributed all over the world. Many Rickettsia species are present on several continents. The geographical distribution of rickettsiae is related to their vectors. New cases of rickettsioses and new locations, where the presence of these bacteria is recognized, are still being identified. The variety and rapid evolution of the distribution and density of ticks and diseases which they transmit shows us the scale of the problem. This review article presents a comparison of the current understanding of the geographic distribution of pathogenic Rickettsia species to that of the beginning of the century.
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14
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Bassene H, Niang EHA, Fenollar F, Doucoure S, Faye O, Raoult D, Sokhna C, Mediannikov O. Role of plants in the transmission of Asaia sp., which potentially inhibit the Plasmodium sporogenic cycle in Anopheles mosquitoes. Sci Rep 2020; 10:7144. [PMID: 32346047 PMCID: PMC7189373 DOI: 10.1038/s41598-020-64163-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 04/07/2020] [Indexed: 12/03/2022] Open
Abstract
Biological control against malaria and its transmission is currently a considerable challenge. Plant-associated bacteria of the genus Asaia are frequently found in nectarivorous arthropods, they thought to have a natural indirect action on the development of plasmodium in mosquitoes. However, virtually nothing is known about its natural cycle. Here, we show the role of nectar-producing plants in the hosting and dissemination of Asaia. We isolated Asaia strains from wild mosquitoes and flowers in Senegal and demonstrated the transmission of the bacteria from infected mosquitoes to sterile flowers and then to 26.6% of noninfected mosquitoes through nectar feeding. Thus, nectar-producing plants may naturally acquire Asaia and then colonize Anopheles mosquitoes through food-borne contamination. Finally, Asaia may play an indirect role in the reduction in the vectorial capacity of Anopheles mosquitoes in a natural environment (due to Plasmodium-antagonistic capacities of Asaia) and be used in the development of tools for Asaia-based paratransgenetic malaria control.
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Affiliation(s)
| | - El Hadji Amadou Niang
- IHU-Méditerranée Infection, Marseille, France
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop (UCAD), de Dakar, Sénégal
| | - Florence Fenollar
- IHU-Méditerranée Infection, Marseille, France
- VITROME, Aix Marseille Univ, IRD, AP-HM, SSA, Marseille, France
| | | | - Ousmane Faye
- Laboratoire d'Ecologie Vectorielle et Parasitaire, Faculté des Sciences et Techniques, Université Cheikh Anta Diop (UCAD), de Dakar, Sénégal
| | - Didier Raoult
- MEФI, IRD, Aix Marseille Univ, AP-HM, Marseille, France
- IHU-Méditerranée Infection, Marseille, France
| | - Cheikh Sokhna
- VITROME, Campus International UCAD-IRD, Dakar, Sénégal
- IHU-Méditerranée Infection, Marseille, France
| | - Oleg Mediannikov
- MEФI, IRD, Aix Marseille Univ, AP-HM, Marseille, France.
- IHU-Méditerranée Infection, Marseille, France.
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15
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Dahmani M, Davoust B, Sambou M, Bassene H, Scandola P, Ameur T, Raoult D, Fenollar F, Mediannikov O. Molecular investigation and phylogeny of species of the Anaplasmataceae infecting animals and ticks in Senegal. Parasit Vectors 2019; 12:495. [PMID: 31640746 PMCID: PMC6805679 DOI: 10.1186/s13071-019-3742-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2019] [Accepted: 10/09/2019] [Indexed: 01/18/2023] Open
Abstract
BACKGROUND Our study aimed to assess the diversity of the species of Anaplasmataceae in Senegal that infect animals and ticks in three areas: near Keur Momar Sarr (northern region), Dielmo and Diop (Sine Saloum, central region of Senegal), and in Casamance (southern region of Senegal). METHODS A total of 204 ticks and 433 blood samples were collected from ruminants, horses, donkeys and dogs. Ticks were identified morphologically and by molecular characterization targeting the 12S rRNA gene. Molecular characterization of species of Anaplasmataceae infecting Senegalese ticks and animals was conducted using the 23S rRNA, 16S rRNA, rpoB and groEL genes. RESULTS Ticks were identified as Rhipicephalus evertsi evertsi (84.3%), Hyalomma rufipes (8.3%), Hyalomma impeltatum (4.9%), R. bursa (1.5%) and R. muhsamae (0.9%). The overall prevalence of Anaplasmataceae infection in ticks was 0.9%, whereas 41.1% of the sampled animals were found infected by one of the species belonging to this family. We identified the pathogen Anaplasma ovis in 55.9% of sheep, A. marginale and A. centrale in 19.4% and 8.1%, respectively, of cattle, as well as a putative new species of Anaplasmataceae. Two Anaplasma species commonly infecting ruminants were identified. Anaplasma cf. platys, closely related to A. platys was identified in 19.8% of sheep, 27.7% of goats and 22.6% of cattle, whereas a putative new species, named here provisionally "Candidatus Anaplasma africae", was identified in 3.7% of sheep, 10.3% of goats and 8.1% of cattle. Ehrlichia canis and Anaplasma platys were identified only from dogs sampled in the Keur Momar Sarr area. Ehrlichia canis was identified in 18.8% of dogs and two R. e. evertsi ticks removed from the same sheep. Anaplasma platys was identified in 15.6% of dogs. Neither of the dogs sampled from Casamance region nor the horses and donkeys sampled from Keur Momar Sarr area were found infected by an Anaplasmataceae species. CONCLUSIONS This study presents a summary of Anaplasmataceae species that infect animals and ticks in three areas from the northern, central and southern regions of Senegal. To our knowledge, our findings demonstrate for the first time the presence of multiple Anaplasmataceae species that infect ticks and domestic animals in Senegal. We recorded two potentially new species commonly infecting ruminants named here provisionally as Anaplasma cf. platys and "Candidatus Anaplasma africae". However, E. canis was the only species identified and amplified from ticks. None of the other Anaplasmataceae species identified in animals were identified in the tick species collected from animals.
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Affiliation(s)
- Mustapha Dahmani
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,Department of Biological Sciences, Old Dominion University, Norfolk, VA, USA
| | - Bernard Davoust
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France
| | - Masse Sambou
- IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,Vectors-Tropical and Mediterranean Infections (VITROME), Campus International UCAD-IRD, Dakar, Sénégal
| | - Hubert Bassene
- IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,Vectors-Tropical and Mediterranean Infections (VITROME), Campus International UCAD-IRD, Dakar, Sénégal
| | - Pierre Scandola
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France
| | - Tinhinene Ameur
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France
| | - Didier Raoult
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France
| | - Florence Fenollar
- IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.,VITROME, UMR Aix-Marseille University, IRD, SSA, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France
| | - Oleg Mediannikov
- Microbes, Evolution, Phylogeny and Infection (MEPHI), UMR Aix-Marseille University, IRD, APHM, IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France. .,IHU Méditerranée Infection, 19-21, Bd Jean Moulin, 13005, Marseille, France.
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16
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Bassene H, Niang EHA, Fenollar F, Dipankar B, Doucouré S, Ali E, Michelle C, Raoult D, Sokhna C, Mediannikov O. 16S Metagenomic Comparison of Plasmodium falciparum-Infected and Noninfected Anopheles gambiae and Anopheles funestus Microbiota from Senegal. Am J Trop Med Hyg 2018; 99:1489-1498. [PMID: 30350766 DOI: 10.4269/ajtmh.18-0263] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
In the context of the pre-elimination of malaria, biological control may provide an alternative or additional tool to current malaria control strategies. During their various stages of development, mosquitoes undergo subsequent changes in their associated microbiota, depending on their environment and nutritional status. Although Anopheles gambiae s.l. and Anopheles funestus are the two major malaria vectors in Senegal, the composition of their microbiota is not yet well known. In this study, we explored the microbiota of mosquitoes naturally infected or not by Plasmodium falciparum (Pf) using the 16S ribosomal RNA gene-based bacterial metagenomic approach. In both vector species, the microbiota was more diverse in Pf-infected samples than in the noninfected ones, although the total number of reads appeared to be higher in noninfected mosquitoes. Overall, the microbiota was different between the two vector species. Noteworthy, the bacterial microbiota was significantly different between Pf-positive and Pf-negative groups whatever the species, but was similar between individuals of the same infection status within a species. Overall, the phylum of Proteobacteria was the most predominant in both species, with bacteria of the genus Burkholderia outweighing the others in noninfected vectors. The presence of some specific bacterial species such as Asaia bogorensis, Enterobacter cloacae, Burkholderia fungorum, and Burkholderia cepacia was also observed in Pf-free samples only. These preliminary observations pave the way for further characterization of the mosquito microbiota to select promising bacterial candidates for potential use in an innovative approach to controlling malaria and overcoming the challenges to achieving a malaria-free world.
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Affiliation(s)
- Hubert Bassene
- Aix Marseille Université, IRD, Assistance Publique-Hopitaux Marseille, Service de Santé des Armées, Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Marseille, France.,Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus International Université Cheikh Anta Diop-Institut de Recherche pour le Développement, Dakar, Sénégal
| | - El Hadji Amadou Niang
- Aix Marseille Université, IRD, AP-HM, Microbes, Evolution, Phylogeny and Infection (MEPHI), Marseille, France.,Laboratoire d'Ecologie Vectorielle et Parasitaire (LEVP), Faculté des Sciences et Techniques, Université Cheikh Anta Diop (UCAD) de Dakar, Dakar, Sénégal.,Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus International Université Cheikh Anta Diop-Institut de Recherche pour le Développement, Dakar, Sénégal
| | - Florence Fenollar
- Aix Marseille Université, IRD, Assistance Publique-Hopitaux Marseille, Service de Santé des Armées, Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Marseille, France
| | - Bachar Dipankar
- Aix Marseille Université, IRD, AP-HM, Microbes, Evolution, Phylogeny and Infection (MEPHI), Marseille, France
| | - Souleymane Doucouré
- Aix Marseille Université, IRD, Assistance Publique-Hopitaux Marseille, Service de Santé des Armées, Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Marseille, France.,Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus International Université Cheikh Anta Diop-Institut de Recherche pour le Développement, Dakar, Sénégal
| | - Essoham Ali
- Laboratoire d'Études et de Recherche en Statistique et Développement (LERSTAD), Université Gaston Berger de Saint Louis, St. Louis, Sénégal
| | - Caroline Michelle
- Aix Marseille Université, IRD, AP-HM, Microbes, Evolution, Phylogeny and Infection (MEPHI), Marseille, France
| | - Didier Raoult
- Aix Marseille Université, IRD, AP-HM, Microbes, Evolution, Phylogeny and Infection (MEPHI), Marseille, France
| | - Cheikh Sokhna
- Aix Marseille Université, IRD, Assistance Publique-Hopitaux Marseille, Service de Santé des Armées, Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Marseille, France.,Vecteurs-Infections Tropicales et Méditerranéennes (VITROME), Campus International Université Cheikh Anta Diop-Institut de Recherche pour le Développement, Dakar, Sénégal
| | - Oleg Mediannikov
- Aix Marseille Université, IRD, AP-HM, Microbes, Evolution, Phylogeny and Infection (MEPHI), Marseille, France
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17
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Diarra AZ, Almeras L, Laroche M, Berenger JM, Koné AK, Bocoum Z, Dabo A, Doumbo O, Raoult D, Parola P. Molecular and MALDI-TOF identification of ticks and tick-associated bacteria in Mali. PLoS Negl Trop Dis 2017; 11:e0005762. [PMID: 28742123 PMCID: PMC5542699 DOI: 10.1371/journal.pntd.0005762] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 08/03/2017] [Accepted: 06/30/2017] [Indexed: 12/14/2022] Open
Abstract
Ticks are considered the second vector of human and animal diseases after mosquitoes. Therefore, identification of ticks and associated pathogens is an important step in the management of these vectors. In recent years, Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has been reported as a promising method for the identification of arthropods including ticks. The objective of this study was to improve the conditions for the preparation of tick samples for their identification by MALDI-TOF MS from field-collected ethanol-stored Malian samples and to evaluate the capacity of this technology to distinguish infected and uninfected ticks. A total of 1,333 ticks were collected from mammals in three distinct sites from Mali. Morphological identification allowed classification of ticks into 6 species including Amblyomma variegatum, Hyalomma truncatum, Hyalomma marginatum rufipes, Rhipicephalus (Boophilus) microplus, Rhipicephalus evertsi evertsi and Rhipicephalus sanguineus sl. Among those, 471 ticks were randomly selected for molecular and proteomic analyses. Tick legs submitted to MALDI-TOF MS revealed a concordant morpho/molecular identification of 99.6%. The inclusion in our MALDI-TOF MS arthropod database of MS reference spectra from ethanol-preserved tick leg specimens was required to obtain reliable identification. When tested by molecular tools, 76.6%, 37.6%, 20.8% and 1.1% of the specimens tested were positive for Rickettsia spp., Coxiella burnetii, Anaplasmataceae and Borrelia spp., respectively. These results support the fact that MALDI-TOF is a reliable tool for the identification of ticks conserved in alcohol and enhances knowledge about the diversity of tick species and pathogens transmitted by ticks circulating in Mali.
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Affiliation(s)
- Adama Zan Diarra
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Lionel Almeras
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- Unité de Parasitologie et Entomologie, Département des Maladies Infectieuses, Institut de Recherche Biomédicale des Armées, Marseille, France
| | - Maureen Laroche
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Jean-Michel Berenger
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Abdoulaye K. Koné
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | | | - Abdoulaye Dabo
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Ogobara Doumbo
- Malaria Research and Training Center, Département d’Epidémiologie des Affections Parasitaires, Faculté de Médecine et d’Odontostomatologie, Faculté de Pharmacie, USTTB, Bamako, Mali
| | - Didier Raoult
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
| | - Philippe Parola
- Aix Marseille Université, UM63, CNRS 7278, IRD 198, INSERM 1095, AP-HM, IHU - Méditerranée Infection, Marseille, France
- * E-mail:
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18
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Ehounoud C, Fenollar F, Dahmani M, N’Guessan J, Raoult D, Mediannikov O. Bacterial arthropod-borne diseases in West Africa. Acta Trop 2017; 171:124-137. [PMID: 28365316 DOI: 10.1016/j.actatropica.2017.03.029] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Indexed: 01/18/2023]
Abstract
Arthropods such as ticks, lice, fleas and mites are excellent vectors for many pathogenic agents including bacteria, protozoa and viruses to animals. Moreover, many of these pathogens can also be accidentally transmitted to humans throughout the world. Bacterial vector-borne diseases seem to be numerous and very important in human pathology, however, they are often ignored and are not well known. Yet they are in a phase of geographic expansion and play an important role in the etiology of febrile episodes in regions of Africa. Since the introduction of molecular techniques, the presence of these pathogens has been confirmed in various samples from arthropods and animals, and more rarely from human samples in West Africa. In this review, the aim is to summarize the latest information about vector-borne bacteria, focusing on West Africa from 2000 until today in order to better understand the epidemiological risks associated with these arthropods. This will allow health and veterinary authorities to develop a strategy for surveillance of arthropods and bacterial disease in order to protect people and animals.
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Abstract
A vast number of novel tick-related microorganisms and tick-borne disease agents have been identified in the past 20 years, and more are being described due to several factors, from the curiosity of clinicians faced with unusual clinical syndromes to new tools used by microbiologists and entomologists. Borrelioses, ehrlichioses, anaplasmosis, and tick-borne rickettsial diseases are some of the emerging diseases that have been described throughout the world in recent years. In this article, we focus on the bacterial agents and diseases that have been recognized in the past 3 years and refer to major recent reviews of other recognized infections.
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Tomassone L, De Meneghi D, Adakal H, Rodighiero P, Pressi G, Grego E. Detection of Rickettsia aeschlimannii and Rickettsia africae in ixodid ticks from Burkina Faso and Somali Region of Ethiopia by new real-time PCR assays. Ticks Tick Borne Dis 2016; 7:1082-1088. [PMID: 27641952 DOI: 10.1016/j.ttbdis.2016.09.005] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2016] [Revised: 08/09/2016] [Accepted: 09/10/2016] [Indexed: 11/16/2022]
Abstract
In the framework of cooperation for development projects in Burkina Faso and Ethiopia, we collected ixodid ticks from cattle, small ruminants and camels. We optimized new TaqMan Probe real-time PCR assays to detect Rickettsia aeschlimannii and Rickettsia africae OmpA gene in the collected samples. Rickettsia africae was identified in 75.0% Amblyomma variegatum (95%CI: 56.6-88.5), while R. aeschlimannii in 24.0% Hyalomma truncatum (95%CI: 9.4-45.1) and 50.0% H. rufipes (95%CI: 29.9-70.0) collected from cattle in different provinces throughout Burkina Faso. Ticks from the Libaan zone, Somali Region of Ethiopia, were also infected by R. africae (28.5% prevalence in Amblyomma gemma, 95%CI: 14.7-46.0) and R. aeschlimannii (27.0% H. truncatum, 95%CI: 5.0-62.9; 88.3% H. rufipes, 95%CI: 60.5-99.3). All tested ticks were adults. The developed diagnostic tools were highly sensitive and enabled us to rapidly classify R. aeschlimannii and R. africae, which were identified in Burkina Faso and in the Somali Region of Ethiopia for the first time. Further studies are needed to assess the zoonotic risk and prevalence of infection in local human populations, who have high contact rates with ticks and their animal hosts.
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Affiliation(s)
- L Tomassone
- Dipartimento Scienze Veterinarie, Università degli Studi di Torino, Largo Braccini 2, 10095 Grugliasco, Torino, Italy.
| | - D De Meneghi
- Dipartimento Scienze Veterinarie, Università degli Studi di Torino, Largo Braccini 2, 10095 Grugliasco, Torino, Italy
| | - H Adakal
- Centre International de Recherche-Développement sur l'Elevage en zone Subhumide - CIRDES, Bobo Dioulasso, Burkina Faso; present affiliation: Département Sciences et Techniques de l'Elevage, Université Dan Dicko Dankoulodo de Maradi, Niger
| | - P Rodighiero
- Comitato di Collaborazione Medica, via Cirié 32/e, Torino, Italy; present affiliation: Associazione Veterinaria di Cooperazione con i Paesi in Via di Sviluppo - AVEC PVS, Via Laffait 13, Donnas, Aosta, Italy
| | - G Pressi
- Comitato di Collaborazione Medica, via Cirié 32/e, Torino, Italy; present affiliation: Associazione Veterinaria di Cooperazione con i Paesi in Via di Sviluppo - AVEC PVS, Via Laffait 13, Donnas, Aosta, Italy
| | - E Grego
- Dipartimento Scienze Veterinarie, Università degli Studi di Torino, Largo Braccini 2, 10095 Grugliasco, Torino, Italy
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Novel Rickettsia and emergent tick-borne pathogens: A molecular survey of ticks and tick-borne pathogens in Shimba Hills National Reserve, Kenya. Ticks Tick Borne Dis 2016; 8:208-218. [PMID: 28011185 DOI: 10.1016/j.ttbdis.2016.09.002] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Revised: 09/01/2016] [Accepted: 09/03/2016] [Indexed: 11/23/2022]
Abstract
Ticks are important vectors of emerging and re-emerging zoonoses, the majority of which originate from wildlife. In recent times, this has become a global public health concern that necessitates surveillance of both known and unknown tick-borne pathogens likely to be future disease threats, as well as their tick vectors. We carried out a survey of the diversity of ticks and tick-borne pathogens in Kenya's Shimba Hills National Reserve (SHNR), an area with intensified human-livestock-wildlife interactions, where we collected 4297 questing ticks (209 adult ticks, 586 nymphs and 3502 larvae). We identified four tick species of two genera (Amblyomma eburneum, Amblyomma tholloni, Rhipicephalus maculatus and a novel Rhipicephalus sp.) based on both morphological characteristics and molecular analysis of 16S rRNA, internal transcribed spacer 2 (ITS 2) and cytochrome oxidase subunit 1 (CO1) genes. We pooled the ticks (3-8 adults, 8-15 nymphs or 30 larvae) depending on species and life-cycle stages, and screened for bacterial, arboviral and protozoal pathogens using PCR with high-resolution melting analysis and sequencing of unique melt profiles. We report the first molecular detection of Anaplasma phagocytophilum, a novel Rickettsia-like and Ehrlichia-like species, in Rh. maculatus ticks. We also detected Ehrlichia chaffeensis, Coxiella sp., Rickettsia africae and Theileria velifera in Am. eburneum ticks for the first time. Our findings demonstrate previously unidentified tick-pathogen relationships and a unique tick diversity in the SHNR that may contribute to livestock, and possibly human, morbidity in the region. This study highlights the importance of routine surveillance in similar areas to elucidate disease transmission dynamics, as a critical component to inform the development of better tick-borne disease diagnosis, prevention and control measures.
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Bassene H, Sambou M, Fenollar F, Clarke S, Djiba S, Mourembou G, L Y AB, Raoult D, Mediannikov O. High Prevalence of Mansonella perstans Filariasis in Rural Senegal. Am J Trop Med Hyg 2015; 93:601-6. [PMID: 26078318 DOI: 10.4269/ajtmh.15-0051] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2015] [Accepted: 04/06/2015] [Indexed: 11/07/2022] Open
Abstract
Large parts of African and American countries are colonized by Mansonella, a very common but poorly described filarial nematode. Bloodsucking flies of the genus Culicoides are suspected to be the vector of Mansonella perstans, but no study in Senegal has confirmed that Culicoides can transmit the parasite. Designed specific real-time quantitative polymerase chain reaction (qPCR) can be used to identify microfilaria in stained blood smears. This study was performed in July and December 2010 in the southeastern Senegal, which is known to be endemic for M. perstans. We analyzed 297 blood smears from febrile and afebrile resident people by qPCR. The global prevalence of M. perstans was approximately 14.5% in both febrile and afebrile individuals. The age group of > 30 years had the highest prevalence (22.0%). No Culicoides among 1,159 studied specimens was positive for M. perstans and its vector in Senegal still requires identification.
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Affiliation(s)
- Hubert Bassene
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Masse Sambou
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Florence Fenollar
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Siân Clarke
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Sawdiatou Djiba
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Gaël Mourembou
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Alioune Badara L Y
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Didier Raoult
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
| | - Oleg Mediannikov
- Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE), Aix Marseille Université, Marseille, France, and Campus Universitaire UCAD-IRD de Hann, Dakar, Senegal; London School of Hygiene and Tropical Medicine, London, United Kingdom; Ministry of Health, Fann Résidence, Rue Aimé Césaire, Dakar, Senegal
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