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Kim KG, Hwang DJ, Park JW, Ryu MG, Kim Y, Yang SJ, Lee JE, Lee GS, Lee JH, Park JS, Seo JM, Kim SH. Distribution and pathogen prevalence of field-collected ticks from south-western Korea: a study from 2019 to 2022. Sci Rep 2024; 14:12336. [PMID: 38811622 PMCID: PMC11136998 DOI: 10.1038/s41598-024-61126-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 05/02/2024] [Indexed: 05/31/2024] Open
Abstract
Hard ticks are known vectors of various pathogens, including the severe fever with thrombocytopenia syndrome virus, Rickettsia spp., Coxiella burnetii, Borrelia spp., Anaplasma phagocytophilum, and Ehrlichia spp. This study aims to investigate the distribution and prevalence of tick-borne pathogens in southwestern Korea from 2019 to 2022. A total of 13,280 ticks were collected during the study period, with H. longicornis accounting for 86.1% of the collected ticks. H. flava, I. nipponensis and A. testudinarium comprised 9.4%, 3.6%, and 0.8% of the ticks, respectively. Among 983 pools tested, Rickettsia spp. (216 pools, 1.6% MIR) were the most prevalent pathogens across all tick species, with R. japonica and R. monacensis frequently detected in I. nipponensis and Haemaphysalis spp., respectively. Borrelia spp. (28 pools, 0.2% MIR) were predominantly detected in I. nipponensis (27 pools, 13.8% MIR, P < 0.001). Co-infections, mainly involving Rickettsia monacensis and Borrelia afzelii, were detected in I. nipponensis. Notably, this study identified R. monacensis for the first time in A. testudinarium in South Korea. These findings offer valuable insights into the tick population and associated pathogens in the region, underscoring the importance of tick-borne disease surveillance and prevention measures.
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Affiliation(s)
- Kwang Gon Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea.
| | - Da Jeong Hwang
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Jung Wook Park
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Mi Geum Ryu
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Yujin Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - So-Jin Yang
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ji-Eun Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Gi Seong Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ju Hye Lee
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Ji Sun Park
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Jung Mi Seo
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea
| | - Sun-Hee Kim
- Division of Infectious Disease Investigation, Health and Environment Research Institute of Gwangju, 584 Mugindae-ro, Seo-gu, Gwangju, 61954, Republic of Korea.
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Hill B, Schafer B, Vargas N, Zamora D, Shrotri R, Perez S, Farmer G, Avon A, Pai A, Mori H, Zhong J. Functional analysis of Rickettsia monacensis strain humboldt folA dihydrofolate reductase gene via complementation assay. Ticks Tick Borne Dis 2023; 14:102217. [PMID: 37379700 DOI: 10.1016/j.ttbdis.2023.102217] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2023] [Revised: 06/12/2023] [Accepted: 06/12/2023] [Indexed: 06/30/2023]
Abstract
Nutritive symbiosis between bacteria and ticks is observed across a range of ecological contexts; however, little characterization on the molecular components responsible for this symbiosis has been done. Previous studies in our lab demonstrated that Rickettsia monacensis str. Humboldt (strain Humboldt) can synthesize folate de novo via the folate biosynthesis pathway involving folA, folC, folE, folKP, and ptpS genes. In this study, expression of the strain Humboldt folA gene within a folA mutant Escherichia coli construct was used to functionally characterize the strain Humboldt folA folate gene in vivo. The strain Humboldt folA folate gene was subcloned into a TransBac vector and transformed into a folA mutant E. coli construct. The mutant containing strain Humboldt folA subclone and a pFE604 clone of the knocked-out folA gene was cured of pFE604. Curing of the folA mutant E. coli construct was successful using acridine orange and 43.5 °C incubation temperature. The plasmid curing assay showed curing efficiency of the folA mutant at 100%. Functional complementation was assessed by growth phenotype on minimal media with and without IPTG between strain Humboldt folA and E. coli folA. Large and homogenous wild-type colony growth was observed for both strain Humboldt and E. coli folA on minimal media with 0.1 mM IPTG, wild-type growth for strain Humboldt folA and pin-point growth for E. coli folA on 0.01 mM IPTG, and pin-point growth without IPTG for both strain Humboldt and E. coli folA. This study provides evidence substantiating the in vivo functionality of strain Humboldt folA in producing functional gene products for folate biosynthesis.
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Affiliation(s)
- Brandon Hill
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Ben Schafer
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Nolan Vargas
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Danny Zamora
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Rohan Shrotri
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Sarahi Perez
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Geoffrey Farmer
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Aren Avon
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Anirudh Pai
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America
| | - Hirotada Mori
- Laboratory of Systems Microbiology, Data Science Center, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan
| | - Jianmin Zhong
- Department of Biological Sciences, Cal Poly Humboldt, 1 Harpst Street, Arcata, CA 95521, United States of America.
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Numan M, Islam N, Adnan M, Zaman Safi S, Chitimia-Dobler L, Labruna MB, Ali A. First genetic report of Ixodes kashmiricus and associated Rickettsia sp. Parasit Vectors 2022; 15:378. [PMID: 36261834 PMCID: PMC9583563 DOI: 10.1186/s13071-022-05509-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 09/26/2022] [Indexed: 11/26/2022] Open
Abstract
Background Hard ticks (Ixodidae) are hematophagous ectoparasites that transmit various pathogens to a variety of hosts including humans. Transhumant herds have been involved in the spread of ticks and associated Rickettsia spp., and studies on this neglected topic have been unexplored in many regions including Pakistan. This study aimed to investigate ticks infesting transhumant herds of sheep (Ovis aries) and goats (Capra hircus) in district Shangla, Khyber Pakhtunkhwa, Pakistan. Methods Of the 144 examined animals, 112 hosts (68 sheep and 44 goats) of transhumant herds were infested by 419 ticks of different life stages including nymphs (105; 25%), males (58; 14%) and females (256; 61%). For molecular analyses, DNA was extracted from 64 collected ticks and subjected to PCR for the amplification of tick 16S rDNA and ITS2 partial sequences and for the amplification of rickettsial gltA and ompA gene sequences. Results All tick specimens were identified as Ixodes kashmiricus based on morphological features. The obtained 16S rDNA and ITS2 sequences showed 95.7% and 95.3% identity, respectively, with Ixodes kazakstani reported from Kyrgyzstan. In the phylogenetic tree, the sequences clustered with members of the Ixodes ricinus species complex, including I. kazakstani and Ixodes apronophorus. Additionally, rickettsial gltA and ompA partial sequences were 99.7% identical to Rickettsia sp. endosymbiont of Ixodes spp. from Panama and Costa Rica and 99.2% with Rickettsia endosymbiont from the USA. Phylogenetically, the rickettsial gltA and ompA partial sequences from I. kashmiricus clustered with various haplotypes of Rickettsia endosymbiont, which were sister cladded to Rickettsia monacensis. Conclusions This is the first genetic report of I. kashmiricus and associated Rickettsia sp. Large-scale tick surveillance studies across the country are needed to investigate Ixodes ticks and associated pathogens. Graphical Abstract ![]()
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Affiliation(s)
- Muhammad Numan
- Department of Zoology, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Nabeela Islam
- Department of Chemistry, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan
| | - Muhammad Adnan
- Department of Zoology, University of Peshawar, Peshawar, Khyber Pakhtunkhwa, Pakistan
| | - Sher Zaman Safi
- Interdisciplinary Research Centre in Biomedical Materials, COMSATS University Islamabad Lahore Campus, Lahore, Punjab, Pakistan
| | | | - Marcelo B Labruna
- Department of Preventive Veterinary Medicine and Animal Health, Faculty of Veterinary Medicine, University of São Paulo, São Paulo, Brazil
| | - Abid Ali
- Department of Zoology, Abdul Wali Khan University Mardan, Mardan, Khyber Pakhtunkhwa, Pakistan.
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Paddock CD, Slater K, Swei A, Zambrano ML, Kleinjan JE, Padgett KA, Saunders MEM, Andrews ES, Trent E, Zhong J, Sambado S, Goldsmith CS, Pascoe EL, Foley J, Lane RS, Karpathy SE. Detection and Isolation of Rickettsia tillamookensis (Rickettsiales: Rickettsiaceae) From Ixodes pacificus (Acari: Ixodidae) From Multiple Regions of California. JOURNAL OF MEDICAL ENTOMOLOGY 2022; 59:1404-1412. [PMID: 35468215 DOI: 10.1093/jme/tjac038] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Indexed: 06/14/2023]
Abstract
The western black-legged tick (Ixodes pacificus) is the most frequently identified human-biting tick species in the western United States and the principal vector of at least three recognized bacterial pathogens of humans. A potentially pathogenic Rickettsia species, first described in 1978 and recently characterized as a novel transitional group agent designated as Rickettsia tillamookensis, also exists among populations of I. pacificus, although the distribution and frequency of this agent are poorly known. We evaluated DNA extracts from 348 host-seeking I. pacificus nymphs collected from 9 locations in five California counties, and from 916 I. pacificus adults collected from 24 locations in 13 counties, by using a real-time PCR designed specifically to detect DNA of R. tillamookensis. DNA of R. tillamookensis was detected in 10 (2.9%) nymphs (95% CI: 1.6-5.2%) and 17 (1.9%) adults (95% CI: 1.2-3.0%) from 11 counties of northern California. Although site-specific infection rates varied greatly, frequencies of infection remained consistently low when aggregated by stage, sex, habitat type, or geographical region. Four novel isolates of R. tillamookensis were cultivated in Vero E6 cells from individual adult ticks collected from Alameda, Nevada, and Yolo counties. Four historical isolates, serotyped previously as 'Tillamook-like' strains over 40 yr ago, were revived from long-term storage in liquid nitrogen and confirmed subsequently by molecular methods as isolates of R. tillamookensis. The potential public health impact of R. tillamookensis requires further investigation.
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Affiliation(s)
- Christopher D Paddock
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Kimetha Slater
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Andrea Swei
- Department of Biology, San Francisco State University, San Francisco, CA, USA
| | - Maria L Zambrano
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Joyce E Kleinjan
- Alameda County Vector Control Services District, Alameda, CA, USA
| | - Kerry A Padgett
- Vector-Borne Disease Section, California Department of Public Health, Richmond, CA, USA
| | - Megan E M Saunders
- Vector-Borne Disease Section, California Department of Public Health, Richmond, CA, USA
| | - Elizabeth S Andrews
- Vector-Borne Disease Section, California Department of Public Health, Richmond, CA, USA
| | - Erin Trent
- Department of Biological Sciences, Humboldt State University, Arcata, CA, USA
| | - Jianmin Zhong
- Department of Biological Sciences, Humboldt State University, Arcata, CA, USA
| | - Samantha Sambado
- Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, CA, USA
| | - Cynthia S Goldsmith
- Infectious Diseases Pathology Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA
| | - Emily L Pascoe
- Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands
| | - Janet Foley
- Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, CA, USA
| | - Robert S Lane
- Department of Environmental Science, Policy and Management, University of California, Berkeley CA, USA
| | - Sandor E Karpathy
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA
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Cull B, Burkhardt NY, Wang XR, Thorpe CJ, Oliver JD, Kurtti TJ, Munderloh UG. The Ixodes scapularis Symbiont Rickettsia buchneri Inhibits Growth of Pathogenic Rickettsiaceae in Tick Cells: Implications for Vector Competence. Front Vet Sci 2022; 8:748427. [PMID: 35071375 PMCID: PMC8770908 DOI: 10.3389/fvets.2021.748427] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 11/22/2021] [Indexed: 12/26/2022] Open
Abstract
Ixodes scapularis is the primary vector of tick-borne pathogens in North America but notably does not transmit pathogenic Rickettsia species. This tick harbors the transovarially transmitted endosymbiont Rickettsia buchneri, which is widespread in I. scapularis populations, suggesting that it confers a selective advantage for tick survival such as providing essential nutrients. The R. buchneri genome includes genes with similarity to those involved in antibiotic synthesis. There are two gene clusters not found in other Rickettsiaceae, raising the possibility that these may be involved in excluding pathogenic bacteria from the tick. This study explored whether the R. buchneri antibiotic genes might exert antibiotic effects on pathogens associated with I. scapularis. Markedly reduced infectivity and replication of the tick-borne pathogens Anaplasma phagocytophilum, R. monacensis, and R. parkeri were observed in IRE11 tick cells hosting R. buchneri. Using a fluorescent plate reader assay to follow infection dynamics revealed that the presence of R. buchneri in tick cells, even at low infection rates, inhibited the growth of R. parkeri by 86-100% relative to R. buchneri-free cells. In contrast, presence of the low-pathogenic species R. amblyommatis or the endosymbiont R. peacockii only partially reduced the infection and replication of R. parkeri. Addition of host-cell free R. buchneri, cell lysate of R. buchneri-infected IRE11, or supernatant from R. buchneri-infected IRE11 cultures had no effect on R. parkeri infection and replication in IRE11, nor did these treatments show any antibiotic effect against non-obligate intracellular bacteria E. coli and S. aureus. However, lysate from R. buchneri-infected IRE11 challenged with R. parkeri showed some inhibitory effect on R. parkeri infection of treated IRE11, suggesting that challenge by pathogenic rickettsiae may induce the antibiotic effect of R. buchneri. This research suggests a potential role of the endosymbiont in preventing other rickettsiae from colonizing I. scapularis and/or being transmitted transovarially. The confirmation that the observed inhibition is linked to R. buchneri's antibiotic clusters requires further investigation but could have important implications for our understanding of rickettsial competition and vector competence of I. scapularis for rickettsiae.
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Affiliation(s)
- Benjamin Cull
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
| | - Nicole Y. Burkhardt
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
| | - Xin-Ru Wang
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
| | - Cody J. Thorpe
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
| | - Jonathan D. Oliver
- Division of Environmental Health Sciences, School of Public Health, University of Minnesota, Minneapolis, MN, United States
| | - Timothy J. Kurtti
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
| | - Ulrike G. Munderloh
- Department of Entomology, College of Food, Agricultural, and Natural Resource Sciences, University of Minnesota, Saint Paul, MN, United States
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Gauthier DT, Karpathy SE, Grizzard SL, Batra D, Rowe LA, Paddock CD. Characterization of a novel transitional group Rickettsia species ( Rickettsia tillamookensis sp. nov.) from the western black-legged tick, Ixodes pacificus. Int J Syst Evol Microbiol 2021; 71. [PMID: 34214027 DOI: 10.1099/ijsem.0.004880] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
Abstract
A previously unrecognized Rickettsia species was isolated in 1976 from a pool of Ixodes pacificus ticks collected in 1967 from Tillamook County, Oregon, USA. The isolate produced low fever and mild scrotal oedema following intraperitoneal injection into male guinea pigs (Cavia porcellus). Subsequent serotyping characterized this isolate as distinct from recognized typhus and spotted fever group Rickettsia species; nonetheless, the isolate remained unevaluated by molecular techniques and was not identified to species level for the subsequent 30 years. Ixodes pacificus is the most frequently identified human-biting tick in the western United States, and as such, formal identification and characterization of this potentially pathogenic Rickettsia species is warranted. Whole-genome sequencing of the Tillamook isolate revealed a genome 1.43 Mbp in size with 32.4 mol% G+C content. Maximum-likelihood phylogeny of core proteins places it in the transitional group of Rickettsia basal to both Rickettsia felis and Rickettsia asembonensis. It is distinct from existing named species, with maximum average nucleotide identity of 95.1% to R. asembonensis and maximum digital DNA-DNA hybridization score similarity to R. felis at 80.1%. The closest similarity at the 16S rRNA gene (97.9%) and sca4 (97.5%/97.6% respectively) is to Candidatus 'Rickettsia senegalensis' and Rickettsia sp. cf9, both isolated from cat fleas (Ctenocephalides felis). We characterized growth at various temperatures and in multiple cell lines. The Tillamook isolate grows aerobically in Vero E6, RF/6A and DH82 cells, and growth is rapid at 28 °C and 32 °C. Using accepted genomic criteria, we propose the name Rickettsia tillamookensis sp. nov., with the type strain Tillamook 23. Strain Tillamook 23 is available from the Centers for Disease Control and Prevention Rickettsial Isolate Reference Collection (WDCM 1093), Atlanta, GA, USA (CRIRC accession number RTI001T) and the Collection de Souches de l'Unité des Rickettsies (WDCM 875), Marseille, France (CSUR accession number R5043). Using accepted genomic criteria, we propose the name Rickettsia tillamookensis sp. nov., with the type strain Tillamook 23 (=CRIRC RTI001=R5043).
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Affiliation(s)
- David T Gauthier
- Department of Biological Sciences, Old Dominion University, Norfolk, Virginia, 23529, USA
| | - Sandor E Karpathy
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, 30329, USA
| | - Stephanie L Grizzard
- Department of Biological Sciences, Old Dominion University, Norfolk, Virginia, 23529, USA
| | - Dhwani Batra
- Division of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia, 30329, USA
| | - Lori A Rowe
- Division of Scientific Resources, Centers for Disease Control and Prevention, Atlanta, Georgia, 30329, USA
| | - Christopher D Paddock
- Rickettsial Zoonoses Branch, Centers for Disease Control and Prevention, Atlanta, Georgia, 30329, USA
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Molecular detection of Rickettsia sp. cf. Rickettsia monacensis in Ixodes sp. cf. Ixodes affinis collected from white-tailed deer in Campeche, Mexico. Parasitol Res 2021; 120:1891-1895. [PMID: 33830363 DOI: 10.1007/s00436-021-07128-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Accepted: 03/16/2021] [Indexed: 10/21/2022]
Abstract
Deer encompass a group of large-sized vertebrates that serve as hosts for a wide variety of ectoparasites, mainly ticks. In Mexico, ticks have relevance as vectors of pathogenic microorganisms, and 20 species of hard ticks are associated with four species of deer, although only a single study has been conducted to detect bacterial agents associated with ticks from deer in the country. In February, 2019 three white-tailed deers (Odocoileus virginianus) were hunted from the locality of Chiná from the municipality of Campeche, Mexico. The sampled deers were parasitized by 26 ticks belonged to three species: Amblyomma mixtum (5♀, 1♂), Amblyomma ovale (2♀, 1♂), and Ixodes sp. cf. Ixodes affinis (15♀, 2♂). Specimens were screened individually for Anaplasma, Borrelia, Ehrlichia, and Rickettsia DNA by the amplification of several fragments of 16S rRNA, gltA, 17-kDa, and flaB genes. This study report for the first time the presence of Rickettsia sp. cf. Rickettsia monacensis in Ixodes sp. cf. Ixodes affinis in Mexico.
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Osborne CJ, Wakeman-Hill AJ, Loa SE, Crosbie PR, Van Laar TA. Rickettsia spp. in Five Tick Species Collected in Central California. JOURNAL OF MEDICAL ENTOMOLOGY 2020; 57:1596-1603. [PMID: 32322900 DOI: 10.1093/jme/tjaa080] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2019] [Indexed: 06/11/2023]
Abstract
Tick-borne disease surveillance in North America has long focused on Lyme disease, though there is currently a significant shift towards comprehensive pathogen surveillance in ticks. Central California has often been overlooked in regular tick-borne pathogen surveillance despite the presence of numerous medically important tick species. The bacterial genus Rickettsia contains tick-borne species that are known pathogens, such as those in the spotted fever group; nonpathogenic endosymbionts; and many species with unknown pathogenic potential. Five common tick species (Ixodes pacificus Cooley and Kohls [Acari: Ixodidae], Dermacentor occidentalis Marx [Acari: Ixodidae], D. variabilis Say, Rhipicephalus sanguineus Latreille [Acari: Ixodidae], and Ornithodoros parkeri Cooley [Acari: Argasidae]) of California were collected by both traditional and modern techniques, and subsequently screened for Rickettsia spp. Many individuals from all five tick species were PCR positive for Rickettsia spp., and a combination of species-specific primers, a restriction fragment length polymorphism assay, and DNA sequencing was used to further characterize the species composition in these ticks. Probable Rickettsia philipii (Rickettsia 364D) was detected in one (1.56%) D. occidentalis collected in Fresno County; R. rhipicephali was detected in 23.4% of D. occidentalis from Fresno Co.; R. bellii was detected in 88.2% of D. variabilis, 7.8% of D. occidentalis, and in one R. rhipicephalus (1.1%) from Fresno Co.; R. monacensis str. Humboldt was detected in three (100%) of I. pacificus collected in both Fresno and Madera Co.; and an uncharacterized Rickettsia was detected in (26.4%) of O. parkeri collected in both Fresno and Madera Co. The findings in this study highlight the need for ongoing surveillance in this region of California.
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Affiliation(s)
- Cameron J Osborne
- Department of Biology, California State University, Fresno, Fresno, CA
- Department of Entomology, Kansas State University, Manhattan, KS
| | | | - Steven E Loa
- Department of Biology, California State University, Fresno, Fresno, CA
| | - Paul R Crosbie
- Department of Biology, California State University, Fresno, Fresno, CA
| | - Tricia A Van Laar
- Department of Biology, California State University, Fresno, Fresno, CA
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Bodnar J, Fitch S, Sanchez J, Lesser M, Baston DS, Zhong J. GTP cyclohydrolase I activity from Rickettsia monacensis strain Humboldt, a rickettsial endosymbiont of Ixodes pacificus. Ticks Tick Borne Dis 2020; 11:101434. [PMID: 32417295 DOI: 10.1016/j.ttbdis.2020.101434] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Revised: 02/11/2020] [Accepted: 03/26/2020] [Indexed: 01/22/2023]
Abstract
The complete folate biosynthesis pathway exists in the genome of a rickettsial endosymbiont of Ixodes pacificus, Rickettsia monacensis strain Humboldt (formerly known as Rickettsia species phylotype G021). Recently, our lab demonstrated that the folA gene of strain Humboldt, the final gene in the folate biosynthesis pathway, encodes a functional dihydrofolate reductase enzyme. In this study, we report R. monacensis strain Humboldt has a functional GTP cyclohydrolase I (GCH1), an enzyme required for the hydrolysis of GTP to form 7,8-dihydroneopterin triphosphate in the folate biosynthesis pathway. The GCH1 gene of R. monacensis, folE, share homology with the folE gene of R. monacensis strain IrR/Munich, with a nucleotide sequence identity of 99%. Amino acid alignment and comparative protein structure modeling have shown that the FolE protein of R. monacensis has a conserved core subunit of GCH1 from the T-fold structural superfamily. All amino acid residues, including conserved GTP binding sites and zinc binding sites, are preserved in the FolE protein of R. monacensis. A recombinant GST-FolE protein from R. monacensis was overexpressed in Escherichia coli, purified by affinity chromatography, and assayed for enzyme activity in vitro. The in vitro enzymatic assay described in this study accorded the recombinant GCH1 enzyme of R. monacensis with a specific activity of 0.81 U/mg. Our data suggest folate genes of R. monacensis strain Humboldt have the potential to produce biochemically active enzymes for de novo folate synthesis, addressing the physioecological underpinnings behind tick-Rickettsia symbioses.
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Affiliation(s)
- James Bodnar
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
| | - Sergio Fitch
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
| | - Jessica Sanchez
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
| | - Molly Lesser
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
| | - David S Baston
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
| | - Jianmin Zhong
- Department of Biological Sciences, Humboldt State University, 1 Harpst Street, Arcata, CA 95521, USA.
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10
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Diop A, El Karkouri K, Raoult D, Fournier PE. Genome sequence-based criteria for demarcation and definition of species in the genus Rickettsia. Int J Syst Evol Microbiol 2020; 70:1738-1750. [DOI: 10.1099/ijsem.0.003963] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
Abstract
Over recent years, genomic information has increasingly been used for prokaryotic species definition and classification. Genome sequence-based alternatives to the gold standard DNA–DNA hybridization (DDH) relatedness have been developed, notably average nucleotide identity (ANI), which is one of the most useful measurements for species delineation in the genomic era. However, the strictly intracellar lifestyle, the few measurable phenotypic properties and the low level of genetic heterogeneity made the current standard genomic criteria for bacterial species definition inapplicable to
Rickettsia
species. We evaluated a range of whole genome sequence (WGS)-based taxonomic parameters to develop guidelines for the classification of
Rickettsia
isolates at genus and species levels. By comparing the degree of similarity of 74 WGSs from 31
Rickettsia
species and 61 WGSs from members of three closely related genera also belonging to the order
Rickettsiales
(
Orientia
, 11 genomes;
Ehrlichia
, 22 genomes; and
Anaplasma
, 28 genomes) using digital DDH (dDDh) and ANI by orthology (OrthoANI) parameters, we demonstrated that WGS-based taxonomic information, which is easy to obtain and use, can serve for reliable classification of isolates within the
Rickettsia
genus and species. To be classified as a member of the genus
Rickettsia
, a bacterial isolate should exhibit OrthoANI values with any
Rickettsia
species with a validly published name of ≥83.63 %. To be classified as a new
Rickettsia
species, an isolate should not exhibit more than any of the following degrees of genomic relatedness levels with the most closely related species: >92.30 and >99.19 % for the dDDH and OrthoANI values, respectively. When applied to four rickettsial isolates of uncertain status, the above-described thresholds enabled their classification as new species in one case. Thus, we propose WGS-based guidelines to efficiently delineate
Rickettsia
species, with OrthoANI and dDDH being the most accurate for classification at the genus and species levels, respectively.
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Affiliation(s)
- Awa Diop
- Institut Hospitalo-universitaire Méditerranée Infection, Marseille, France
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-universitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Khalid El Karkouri
- Institut Hospitalo-universitaire Méditerranée Infection, Marseille, France
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-universitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
| | - Didier Raoult
- UMR MEPHI, Aix-Marseille University, Institut pour la Recherche et le Développement, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France
- Institut Hospitalo-universitaire Méditerranée Infection, Marseille, France
| | - Pierre-Edouard Fournier
- Institut Hospitalo-universitaire Méditerranée Infection, Marseille, France
- UMR VITROME, Aix-Marseille University, Institut pour la Recherche et le Développement, Service de Santé des Armées, Assistance Publique-Hôpitaux de Marseille, Institut Hospitalo-universitaire Méditerranée Infection, 19-21 Boulevard Jean Moulin, 13005 Marseille, France
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11
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Sanchez-Vicente S, Tagliafierro T, Coleman JL, Benach JL, Tokarz R. Polymicrobial Nature of Tick-Borne Diseases. mBio 2019; 10:e02055-19. [PMID: 31506314 PMCID: PMC6737246 DOI: 10.1128/mbio.02055-19] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 08/07/2019] [Indexed: 01/08/2023] Open
Abstract
Tick-borne diseases have doubled in the last 12 years, and their geographic distribution has spread as well. The clinical spectrum of tick-borne diseases can range from asymptomatic to fatal infections, with a disproportionate incidence in children and the elderly. In the last few years, new agents have been discovered, and genetic changes have helped in the spread of pathogens and ticks. Polymicrobial infections, mostly in Ixodes scapularis, can complicate diagnostics and augment disease severity. Amblyomma americanum ticks have expanded their range, resulting in a dynamic and complex situation, possibly fueled by climate change. To document these changes, using molecular biology strategies for pathogen detection, an assessment of 12 microbes (9 pathogens and 3 symbionts) in three species of ticks was done in Suffolk County, New York. At least one agent was detected in 63% of I. scapularis ticksBorrelia burgdorferi was the most prevalent pathogen (57% in adults; 27% in nymphs), followed by Babesia microti (14% in adults; 15% in nymphs), Anaplasma phagocytophilum (14% in adults; 2% in nymphs), Borrelia miyamotoi (3% in adults), and Powassan virus (2% in adults). Polymicrobial infections were detected in 22% of I. scapularis ticks, with coinfections of B. burgdorferi and B. microti (9%) and of B. burgdorferi and A. phagocytophilum (7%). Three Ehrlichia species were detected in 4% of A. americanum ticks. The rickettsiae constituted the largest prokaryotic biomass of all the ticks tested and included Rickettsia amblyommatis, Rickettsia buchneri, and Rickettsia montanensis The high rates of polymicrobial infection in ticks present an opportunity to study the biological interrelationships of pathogens and their vectors.IMPORTANCE Tick-borne diseases have increased in prevalence in the United States and abroad. The reasons for these increases are multifactorial, but climate change is likely to be a major factor. One of the main features of the increase is the geographic expansion of tick vectors, notably Amblyomma americanum, which has brought new pathogens to new areas. The clinical spectrum of tick-borne diseases can range from asymptomatic to fatal infections, with a disproportionate incidence in children and the elderly. In addition, new pathogens that are cotransmitted by Ixodes scapularis have been discovered and have led to difficult diagnoses and to disease severity. Of these, Borrelia burgdorferi, the agent of Lyme disease, continues to be the most frequently transmitted pathogen. However, Babesia microti, Borrelia miyamotoi (another spirochete), Anaplasma phagocytophilum, and Powassan virus are frequent cotransmitted agents. Polymicrobial infection has important consequences for the diagnosis and management of tick-borne diseases.
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Affiliation(s)
- Santiago Sanchez-Vicente
- Department of Molecular Genetics and Microbiology and Center for Infectious Diseases, Stony Brook University, Stony Brook, New York, USA
| | - Teresa Tagliafierro
- Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA
| | - James L Coleman
- Department of Molecular Genetics and Microbiology and Center for Infectious Diseases, Stony Brook University, Stony Brook, New York, USA
| | - Jorge L Benach
- Department of Molecular Genetics and Microbiology and Center for Infectious Diseases, Stony Brook University, Stony Brook, New York, USA
| | - Rafal Tokarz
- Center for Infection and Immunity, Mailman School of Public Health, Columbia University, New York, New York, USA
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