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Lin ZT, Du LF, Zhang MZ, Han XY, Wang BH, Meng J, Yu FX, Zhou XQ, Wang N, Li C, Wang XY, Liu J, Gao WY, Ye RZ, Xia LY, Sun Y, Jia N, Jiang JF, Zhao L, Cui XM, Zhan L, Cao WC. Genomic Characteristics of Emerging Intraerythrocytic Anaplasma capra and High Prevalence in Goats, China. Emerg Infect Dis 2023; 29:1780-1788. [PMID: 37610104 PMCID: PMC10461651 DOI: 10.3201/eid2909.230131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023] Open
Abstract
Anaplasma capra is an emerging tickborne human pathogen initially recognized in China in 2015; it has been reported in ticks and in a wide range of domestic and wild animals worldwide. We describe whole-genome sequences of 2 A. capra strains from metagenomic sequencing of purified erythrocytes from infected goats in China. The genome of A. capra was the smallest among members of the genus Anaplasma. The genomes of the 2 A. capra strains contained comparable G+C content and numbers of pseudogenes with intraerythrocytic Anaplasma species. The 2 A. capra strains had 54 unique genes. The prevalence of A. capra was high among goats in the 2 endemic areas. Phylogenetic analyses revealed that the A. capra strains detected in this study were basically classified into 2 subclusters with those previously detected in Asia. Our findings clarify details of the genomic characteristics of A. capra and shed light on its genetic diversity.
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Affiliation(s)
- Zhe-Tao Lin
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Li-Feng Du
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Ming-Zhu Zhang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Xiao-Yu Han
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Bai-Hui Wang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Jiao Meng
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Fu-Xun Yu
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Xiao-Quan Zhou
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Ning Wang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Cheng Li
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Xiao-Yang Wang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Jing Liu
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Wan-Ying Gao
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Run-Ze Ye
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Luo-Yuan Xia
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Yi Sun
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Na Jia
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
| | - Jia-Fu Jiang
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Beijing, China (Z.-T. Lin, L.-F. Du, M.-Z. Zhang, X.-Y. Han, Y. Sun, N. Jia, J.-F. Jiang, X.-M. Cui, W.-C. Cao)
- Institute of EcoHealth, School of Public Health, Shandong University, Jinan, China (L.-F. Du, M.-Z. Zhang, B.-H. Wang, N. Wang, C. Li, X.-Y. Wang, J. Liu, W.-Y. Gao, R.-Z. Ye, L.-Y. Xia, L. Zhao)
- National Health Commission Key Laboratory of Pulmonary Immunological Diseases, Guizhou Provincial People’s Hospital, Guiyang, China (J. Meng, F.-X. Yu, L. Zhan)
- Guizhou Provincial Blood Center, Guiyang (X.-Q. Zhou)
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