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Tomoi T, Yoshida Y, Ohe S, Kabeya Y, Hasebe M, Morohoshi T, Murata T, Sakamoto J, Tamada Y, Kamei Y. Infrared laser-induced gene expression in single cells characterized by quantitative imaging in Physcomitrium patens. Commun Biol 2024; 7:1448. [PMID: 39506095 PMCID: PMC11541703 DOI: 10.1038/s42003-024-07141-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 10/24/2024] [Indexed: 11/08/2024] Open
Abstract
A spatiotemporal understanding of gene function requires the precise control of gene expression in each cell. Here, we use an infrared laser-evoked gene operator (IR-LEGO) system to induce gene expression at the single-cell level in the moss Physcomitrium patens by heating a living cell with an IR laser and thereby activating the heat shock response. We identify the laser irradiation conditions that provide higher inducibility with lower invasiveness by changing the laser power and irradiation duration. Furthermore, we quantitatively characterize the induction profile of the heat shock response using a heat-induced fluorescence reporter system after the IR laser irradiation of single cells under different conditions. Our data indicate that IR laser irradiation with long duration leads to higher inducibility according to increase in the laser power but not vice versa, and that the higher laser power even without conferring apparent damage to the cells decelerates and/or delayed gene induction. We define the temporal shift in expression as a function of onset and duration according to laser power and irradiation duration. This study contributes to the versatile application of IR-LEGO in plants and improves our understanding of heat shock-induced gene expression.
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Affiliation(s)
- Takumi Tomoi
- Innovation Department, Center for Innovation Support, Institute for Social Innovation and Cooperation, Utsunomiya University, Utsunomiya, Japan.
- School of Engineering, Utsunomiya University, Utsunomiya, Japan.
- Department of Applied Biological Science, Tokyo University of Science, Noda, Japan.
- Laboratory for Biothermology, National Institute for Basic Biology, Okazaki, Japan.
| | - Yuka Yoshida
- Graduate School of Regional Development and Creativity, Utsunomiya University, Utsunomiya, Japan
| | - Suguru Ohe
- School of Engineering, Utsunomiya University, Utsunomiya, Japan
| | - Yukiko Kabeya
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki, Japan
| | - Mitsuyasu Hasebe
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki, Japan
- Department of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan
| | - Tomohiro Morohoshi
- School of Engineering, Utsunomiya University, Utsunomiya, Japan
- Graduate School of Regional Development and Creativity, Utsunomiya University, Utsunomiya, Japan
| | - Takashi Murata
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki, Japan
- Department of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan
- Department of Applied Bioscience, Kanagawa Institute of Technology, Atsugi, Japan
| | - Joe Sakamoto
- Laboratory for Biothermology, National Institute for Basic Biology, Okazaki, Japan
- Biophotonics Research Group, Exploratory Research Center on Life and Living Systems (ExCELLS), Okazaki, Japan
| | - Yosuke Tamada
- School of Engineering, Utsunomiya University, Utsunomiya, Japan.
- Graduate School of Regional Development and Creativity, Utsunomiya University, Utsunomiya, Japan.
- Division of Evolutionary Biology, National Institute for Basic Biology, Okazaki, Japan.
- Department of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan.
- Center for Optical Research and Education (CORE), Utsunomiya University, Utsunomiya, Japan.
- Robotics, Engineering and Agriculture-technology Laboratory (REAL), Utsunomiya University, Utsunomiya, Japan.
| | - Yasuhiro Kamei
- Laboratory for Biothermology, National Institute for Basic Biology, Okazaki, Japan.
- Department of Basic Biology, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan.
- Center for Optical Research and Education (CORE), Utsunomiya University, Utsunomiya, Japan.
- Optics and Imaging Facility, Trans-Scale Biology Center, National Institute for Basic Biology, Okazaki, Japan.
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Perillo M, Sepe RM, Paganos P, Toscano A, Annunziata R. Sea cucumbers: an emerging system in evo-devo. EvoDevo 2024; 15:3. [PMID: 38368336 PMCID: PMC10874539 DOI: 10.1186/s13227-023-00220-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 12/24/2023] [Indexed: 02/19/2024] Open
Abstract
A challenge for evolutionary developmental (evo-devo) biology is to expand the breadth of research organisms used to investigate how animal diversity has evolved through changes in embryonic development. New experimental systems should couple a relevant phylogenetic position with available molecular tools and genomic resources. As a phylum of the sister group to chordates, echinoderms extensively contributed to our knowledge of embryonic patterning, organ development and cell-type evolution. Echinoderms display a variety of larval forms with diverse shapes, making them a suitable group to compare the evolution of embryonic developmental strategies. However, because of the laboratory accessibility and the already available techniques, most studies focus on sea urchins and sea stars mainly. As a comparative approach, the field would benefit from including information on other members of this group, like the sea cucumbers (holothuroids), for which little is known on the molecular basis of their development. Here, we review the spawning and culture methods, the available morphological and molecular information, and the current state of genomic and transcriptomic resources on sea cucumbers. With the goal of making this system accessible to the broader community, we discuss how sea cucumber embryos and larvae can be a powerful system to address the open questions in evo-devo, including understanding the origins of bilaterian structures.
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Affiliation(s)
- Margherita Perillo
- Bell Center for Regenerative Biology and Tissue Engineering, Marine Biological Laboratory, 7 MBL St., Woods Hole, MA, 02543, USA.
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy.
| | - Rosa Maria Sepe
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Periklis Paganos
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
| | - Alfonso Toscano
- Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Naples, Italy
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