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Shi H, Jiang J, Yu W, Cheng Y, Wu S, Zong H, Wang X, Ding A, Wang W, Sun Y. Naringenin restricts the colonization and growth of Ralstonia solanacearum in tobacco mutant KCB-1. PLANT PHYSIOLOGY 2024; 195:1818-1834. [PMID: 38573326 PMCID: PMC11213252 DOI: 10.1093/plphys/kiae185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 02/21/2024] [Indexed: 04/05/2024]
Abstract
Bacterial wilt severely jeopardizes plant growth and causes enormous economic loss in the production of many crops, including tobacco (Nicotiana tabacum). Here, we first demonstrated that the roots of bacterial wilt-resistant tobacco mutant KCB-1 can limit the growth and reproduction of Ralstonia solanacearum. Secondly, we demonstrated that KCB-1 specifically induced an upregulation of naringenin content in root metabolites and root secretions. Further experiments showed that naringenin can disrupt the structure of R. solanacearum, inhibit the growth and reproduction of R. solanacearum, and exert a controlling effect on bacterial wilt. Exogenous naringenin application activated the resistance response in tobacco by inducing the burst of reactive oxygen species and salicylic acid deposition, leading to transcriptional reprogramming in tobacco roots. Additionally, both external application of naringenin in CB-1 and overexpression of the Nicotiana tabacum chalcone isomerase (NtCHI) gene, which regulates naringenin biosynthesis, in CB-1 resulted in a higher complexity of their inter-root bacterial communities than in untreated CB-1. Further analysis showed that naringenin could be used as a marker for resistant tobacco. The present study provides a reference for analyzing the resistance mechanism of bacterial wilt-resistant tobacco and controlling tobacco bacterial wilt.
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Affiliation(s)
- Haoqi Shi
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Jiale Jiang
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
- Graduate School of Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Wen Yu
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou 350003, China
| | - Yazhi Cheng
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou 350003, China
| | - Shengxin Wu
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou 350003, China
| | - Hao Zong
- Shandong Linyi Tobacco Co., Ltd., Linyi 276000, China
| | - Xiaoqiang Wang
- Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Anming Ding
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Weifeng Wang
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Yuhe Sun
- Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266101, China
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Wang X, Qi F, Sun Z, Liu H, Wu Y, Wu X, Xu J, Liu H, Qin L, Wang Z, Sang S, Dong W, Huang B, Zheng Z, Zhang X. Transcriptome sequencing and expression analysis in peanut reveal the potential mechanism response to Ralstonia solanacearum infection. BMC PLANT BIOLOGY 2024; 24:207. [PMID: 38515036 PMCID: PMC10956345 DOI: 10.1186/s12870-024-04877-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 03/03/2024] [Indexed: 03/23/2024]
Abstract
BACKGROUND Bacterial wilt caused by Ralstonia solanacearum severely affects peanut (Arachis hypogaea L.) yields. The breeding of resistant cultivars is an efficient means of controlling plant diseases. Therefore, identification of resistance genes effective against bacterial wilt is a matter of urgency. The lack of a reference genome for a resistant genotype severely hinders the process of identification of resistance genes in peanut. In addition, limited information is available on disease resistance-related pathways in peanut. RESULTS Full-length transcriptome data were used to generate wilt-resistant and -susceptible transcript pools. In total, 253,869 transcripts were retained to form a reference transcriptome for RNA-sequencing data analysis. Kyoto Encyclopedia of Genes and Genomes pathway enrichment analysis of differentially expressed genes revealed the plant-pathogen interaction pathway to be the main resistance-related pathway for peanut to prevent bacterial invasion and calcium plays an important role in this pathway. Glutathione metabolism was enriched in wilt-susceptible genotypes, which would promote glutathione synthesis in the early stages of pathogen invasion. Based on our previous quantitative trait locus (QTL) mapping results, the genes arahy.V6I7WA and arahy.MXY2PU, which encode nucleotide-binding site-leucine-rich repeat receptor proteins, were indicated to be associated with resistance to bacterial wilt. CONCLUSIONS This study identified several pathways associated with resistance to bacterial wilt and identified candidate genes for bacterial wilt resistance in a major QTL region. These findings lay a foundation for investigation of the mechanism of resistance to bacterial wilt in peanut.
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Affiliation(s)
- Xiao Wang
- College of Agronomy, Shenyang Agricultural University, Shenyang, 110866, China
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Feiyan Qi
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Ziqi Sun
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Hongfei Liu
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Yue Wu
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Xiaohui Wu
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Jing Xu
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Hua Liu
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Li Qin
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Zhenyu Wang
- Henan Academy of Agricultural Sciences, Institute of Plant Protection, Zhengzhou, 450002, China
| | - Suling Sang
- Henan Academy of Agricultural Sciences, Institute of Plant Protection, Zhengzhou, 450002, China
| | - Wenzhao Dong
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Bingyan Huang
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China
| | - Zheng Zheng
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China.
| | - Xinyou Zhang
- College of Agronomy, Shenyang Agricultural University, Shenyang, 110866, China.
- The Shennong Laboratory, Institute of Crop Molecular Breeding, Henan Academy of Agricultural Sciences, National Innovation Centre for Bio-Breeding Industry, Key Laboratory of Oil Crops in Huang-Huai-Hai Plains, Ministry of Agriculture, Henan Provincial Key Laboratory for Oil Crops Improvement, Zhengzhou, 450002, China.
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Kumari M, Yagnik KN, Gupta V, Singh IK, Gupta R, Verma PK, Singh A. Metabolomics-driven investigation of plant defense response against pest and pathogen attack. PHYSIOLOGIA PLANTARUM 2024; 176:e14270. [PMID: 38566280 DOI: 10.1111/ppl.14270] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2023] [Revised: 02/27/2024] [Accepted: 02/29/2024] [Indexed: 04/04/2024]
Abstract
The advancement of metabolomics has assisted in the identification of various bewildering characteristics of the biological system. Metabolomics is a standard approach, facilitating crucial aspects of system biology with absolute quantification of metabolites using minimum samples, based on liquid/gas chromatography, mass spectrometry and nuclear magnetic resonance. The metabolome profiling has narrowed the wide gaps of missing information and has enhanced the understanding of a wide spectrum of plant-environment interactions by highlighting the complex pathways regulating biochemical reactions and cellular physiology under a particular set of conditions. This high throughput technique also plays a prominent role in combined analyses of plant metabolomics and other omics datasets. Plant metabolomics has opened a wide paradigm of opportunities for developing stress-tolerant plants, ensuring better food quality and quantity. However, despite advantageous methods and databases, the technique has a few limitations, such as ineffective 3D capturing of metabolites, low comprehensiveness, and lack of cell-based sampling. In the future, an expansion of plant-pathogen and plant-pest response towards the metabolite architecture is necessary to understand the intricacies of plant defence against invaders, elucidation of metabolic pathway operational during defence and developing a direct correlation between metabolites and biotic stresses. Our aim is to provide an overview of metabolomics and its utilities for the identification of biomarkers or key metabolites associated with biotic stress, devising improved diagnostic methods to efficiently assess pest and pathogen attack and generating improved crop varieties with the help of combined application of analytical and molecular tools.
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Affiliation(s)
- Megha Kumari
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
| | - Kalpesh Nath Yagnik
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
| | - Vaishali Gupta
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
| | - Indrakant K Singh
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, New Delhi, India
| | - Ravi Gupta
- College of General Education, Kookmin University, Seoul, Republic of Korea
| | - Praveen K Verma
- Plant-Immunity Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Archana Singh
- Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, India
- Department of Botany, Hansraj College, University of Delhi, Delhi, India
- Delhi School of Climate Change and Sustainability, Institution of Eminence, Maharishi Karnad Bhawan, University of Delhi, India
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Hamilton CD, Zaricor B, Dye CJ, Dresserl E, Michaels R, Allen C. Ralstonia solanacearum pandemic lineage strain UW551 overcomes inhibitory xylem chemistry to break tomato bacterial wilt resistance. MOLECULAR PLANT PATHOLOGY 2024; 25:e13395. [PMID: 37846613 PMCID: PMC10782650 DOI: 10.1111/mpp.13395] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2023] [Revised: 08/01/2023] [Accepted: 09/15/2023] [Indexed: 10/18/2023]
Abstract
Plant-pathogenic Ralstonia strains cause bacterial wilt disease by colonizing xylem vessels of many crops, including tomato. Host resistance is the best control for bacterial wilt, but resistance mechanisms of the widely used Hawaii 7996 tomato breeding line (H7996) are unknown. Using growth in ex vivo xylem sap as a proxy for host xylem, we found that Ralstonia strain GMI1000 grows in sap from both healthy plants and Ralstonia-infected susceptible plants. However, sap from Ralstonia-infected H7996 plants inhibited Ralstonia growth, suggesting that in response to Ralstonia infection, resistant plants increase inhibitors in their xylem sap. Consistent with this, reciprocal grafting and defence gene expression experiments indicated that H7996 wilt resistance acts in both above- and belowground plant parts. Concerningly, H7996 resistance is broken by Ralstonia strain UW551 of the pandemic lineage that threatens highland tropical agriculture. Unlike other Ralstonia, UW551 grew well in sap from Ralstonia-infected H7996 plants. Moreover, other Ralstonia strains could grow in sap from H7996 plants previously infected by UW551. Thus, UW551 overcomes H7996 resistance in part by detoxifying inhibitors in xylem sap. Testing a panel of xylem sap compounds identified by metabolomics revealed that no single chemical differentially inhibits Ralstonia strains that cannot infect H7996. However, sap from Ralstonia-infected H7996 contained more phenolic compounds, which are known to be involved in plant antimicrobial defence. Culturing UW551 in this sap reduced total phenolic levels, indicating that the resistance-breaking Ralstonia strain degrades these chemical defences. Together, these results suggest that H7996 tomato wilt resistance depends in part on inducible phenolic compounds in xylem sap.
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Affiliation(s)
- Corri D. Hamilton
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
- Department of Microbiology and ImmunologyUniversity of British ColumbiaVancouverBritish ColumbiaCanada
| | - Beatriz Zaricor
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
| | - Carolyn Jean Dye
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
| | - Emma Dresserl
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
| | - Renee Michaels
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
| | - Caitilyn Allen
- Department of Plant PathologyUniversity of Wisconsin MadisonMadisonWisconsinUSA
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Zhang H, Ikram M, Li R, Xia Y, Zhao W, Yuan Q, Siddique KHM, Guo P. Uncovering the transcriptional responses of tobacco (Nicotiana tabacum L.) roots to Ralstonia solanacearum infection: a comparative study of resistant and susceptible cultivars. BMC PLANT BIOLOGY 2023; 23:620. [PMID: 38057713 DOI: 10.1186/s12870-023-04633-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Accepted: 11/26/2023] [Indexed: 12/08/2023]
Abstract
BACKGROUND Tobacco bacterial wilt (TBW) caused by Ralstonia solanacearum is the most serious soil-borne disease of tobacco that significantly reduces crop yield. However, the limited availability of resistance in tobacco hinders breeding efforts for this disease. RESULTS In this study, we conducted hydroponic experiments for the root expression profiles of D101 (resistant) and Honghuadajinyuan (susceptible) cultivars in response to BW infection at 0 h, 6 h, 1 d, 3 d, and 7d to explore the defense mechanisms of BW resistance in tobacco. As a result, 20,711 and 16,663 (total: 23,568) differentially expressed genes (DEGs) were identified in the resistant and susceptible cultivars, respectively. In brief, at 6 h, 1 d, 3 d, and 7 d, the resistant cultivar showed upregulation of 1553, 1124, 2583, and 7512 genes, while the susceptible cultivar showed downregulation of 1213, 1295, 813, and 7735 genes. Similarly, across these time points, the resistant cultivar had downregulation of 1034, 749, 1686, and 11,086 genes, whereas the susceptible cultivar had upregulation of 1953, 1790, 2334, and 6380 genes. The resistant cultivar had more up-regulated genes at 3 d and 7 d than the susceptible cultivar, indicating that the resistant cultivar has a more robust defense response against the pathogen. The GO and KEGG enrichment analysis showed that these genes are involved in responses to oxidative stress, plant-pathogen interactions, cell walls, glutathione and phenylalanine metabolism, and plant hormone signal transduction. Among the DEGs, 239 potential candidate genes were detected, including 49 phenylpropane/flavonoids pathway-associated, 45 glutathione metabolic pathway-associated, 47 WRKY, 48 ERFs, eight ARFs, 26 pathogenesis-related genes (PRs), and 14 short-chain dehydrogenase/reductase genes. In addition, two highly expressed novel genes (MSTRG.61386-R1B-17 and MSTRG.61568) encoding nucleotide-binding site leucine-rich repeat (NBS-LRR) proteins were identified in both cultivars at 7 d. CONCLUSIONS This study revealed significant enrichment of DEGs in GO and KEGG terms linked to glutathione, flavonoids, and phenylpropane pathways, indicating the potential role of glutathione and flavonoids in early BW resistance in tobacco roots. These findings offer fundamental insight for further exploration of the genetic architecture and molecular mechanisms of BW resistance in tobacco and solanaceous plants at the molecular level.
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Affiliation(s)
- Hailing Zhang
- Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, School of Life Sciences, Guangzhou University, Guangzhou, 510006, China
| | - Muhammad Ikram
- Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, School of Life Sciences, Guangzhou University, Guangzhou, 510006, China
| | - Ronghua Li
- Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, School of Life Sciences, Guangzhou University, Guangzhou, 510006, China
| | - Yanshi Xia
- Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, School of Life Sciences, Guangzhou University, Guangzhou, 510006, China
| | - Weicai Zhao
- Guangdong Research Institute of Tobacco Science, Shaoguan, 512029, China
| | - Qinghua Yuan
- Guangdong Provincial Engineering & Technology Research Center for Tobacco Breeding and Comprehensive Utilization, Guangdong Key Laboratory for Crops Genetic Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GAAS), Guangzhou, 510640, China.
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, Perth, WA, 6001, Australia
| | - Peiguo Guo
- Guangdong Provincial Key Laboratory of Plant Adaptation and Molecular Design, School of Life Sciences, Guangzhou University, Guangzhou, 510006, China.
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Cai L, Huang X, Feng H, Fan G, Sun X. Composite g-C 3 N 4 @ZnO NP electrostatic self-assembly: enhanced ROS as a key factor for high-efficiency control of tobacco wildfire disease. PEST MANAGEMENT SCIENCE 2023; 79:5140-5151. [PMID: 37609876 DOI: 10.1002/ps.7715] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Revised: 08/08/2023] [Accepted: 08/23/2023] [Indexed: 08/24/2023]
Abstract
BACKGROUND The utilization of non-metallic inorganic nanomaterials for antimicrobial photocatalytic technology has emerged as a promising approach to combat drug-resistant bacteria. Recently, g-C3 N4 nanosheets have attracted significant attention due to their exceptional stability, degradability, low cost, and remarkable antibacterial properties. In this study, a facile electrostatic self-assembly approach was utilized to functionalize ZnO nanoparticles with g-C3 N4 nanosheets, resulting in the formation of g-C3 N4 @ZnO nanoparticle composites. RESULTS The Z-shaped heterojunction architecture of these composites facilitates efficient separation of photogenerated electron-hole pairs and enhances visible light catalytic performance. Moreover, the formation of the g-C3 N4 @ZnO heterostructure showed a higher photocatalytic capacity and the generation of reactive oxygen species (ROS) than g-C3 N4 nanosheets. The photocatalytic antibacterial mechanisms of g-C3 N4 @ZnO at the transcriptomic level primarily involve disrupting bacterial membrane synthesis and inhibiting motility and energy metabolism. Therefore, the antibacterial mechanism of g-C3 N4 @ZnO can be attributed to a combination of physical membrane damage, chemical damage (ROS enhancement) and inhibition of chemotaxis, biofilm formation and flagellar motility. CONCLUSION These findings collectively provide novel high potential and insights into the practical application of photocatalysts in plant disease management. © 2023 Society of Chemical Industry.
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Affiliation(s)
- Lin Cai
- College of Tobacco Science of Guizhou University, Guizhou Key Laboratory for Tobacco Quality, Guiyang, China
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang, China
| | - Xunliang Huang
- National Key Laboratory of Green Pesticide, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Center for R&D of Fine Chemicals of Guizhou University, Guiyang, China
| | - Hui Feng
- College of Tobacco Science of Guizhou University, Guizhou Key Laboratory for Tobacco Quality, Guiyang, China
| | - Guangjin Fan
- College of Plant Protection, Southwest University, Chongqing, China
| | - Xianchao Sun
- College of Plant Protection, Southwest University, Chongqing, China
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Feng J, Rana S, Liu Z, Wang Y, Cai Q, Geng X, Zhou H, Zhang T, Wang S, Xue X, Li M, Jemim RS, Li Z. Diversity Analysis of Leaf Nutrient Endophytes and Metabolites in Dioecious Idesia polycarpa Maxim Leaves during Reproductive Stages. LIFE (BASEL, SWITZERLAND) 2022; 12:life12122041. [PMID: 36556406 PMCID: PMC9785831 DOI: 10.3390/life12122041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/17/2022] [Revised: 12/04/2022] [Accepted: 12/05/2022] [Indexed: 12/12/2022]
Abstract
Leaves are essential vegetative organs of plants. Studying the variations in leaf nutrient content and microbial communities of male and female plants at reproductive stages helps us understand allocation and adaptation strategies. This study aimed to determine the nutrient characteristics and microbial differences in the leaves of male and female Idesia polycarpa at reproductive stages. Seven-year-old female and male plants were used as test materials in this experiment. The samples were collected at three stages: flowering (May), fruit matter accumulation (July), and fruit ripening (October). The nitrogen (TN), phosphorus (TP), potassium (TK), carbon (TC), and the pH of the female and male leaves were analyzed. In addition, the leaf microbial diversity and differential metabolites were determined using the Illumina high-throughput sequencing method and the ultra-high performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS) method at the reproductive developmental stages. This study found that male and female plant leaves had different TN and TK contents over time but no difference in TC and TP content. The significant differences in bacterial diversity between male and female plants and the richness of the fungi of male plants at the flowering and fruit maturity stages were observed. Proteobacteria, Pseudomonadaceae, Ascomycota, and Aspergillus were the dominant bacteria and fungi in the Idesia polycarpa leaves. The presence of microorganisms differed in the two sexes in different periods. Alphaproteobacteria and Sordariomycetes were the indicator groups for male leaves, and Pseudomonas and Sordariomycetes were the indicator groups for female leaves. Significant differences in phenolic acid were found between male and female leaves. A KEGG enrichment analysis revealed that differential metabolites were enriched in metabolic pathways, amino acid biosynthesis, and the nucleotide metabolism. According to a correlation analysis, leaf TK and TP were strongly correlated with endophytic bacteria abundance and differential metabolite composition. This study revealed the changes in substances and microorganisms in the leaves of male and female plants in their reproductive stages. It provides a theoretical basis for developing and utilizing the leaves of Idesia polycarpa and for field management.
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Affiliation(s)
- Jian Feng
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Sohel Rana
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Zhen Liu
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Yanmei Wang
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Qifei Cai
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Xiaodong Geng
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Huina Zhou
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Tao Zhang
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Shasha Wang
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Xiaoyan Xue
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Mingwan Li
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
| | - Razia Sultana Jemim
- College of Life Sciences, Henan Agricultural University, Zhengzhou 450046, China
| | - Zhi Li
- College of Forestry, Henan Agricultural University, Zhengzhou 450046, China
- Correspondence: ; Tel.: +86-17752559889
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8
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Shi H, Xu P, Wu S, Yu W, Cheng Y, Chen Z, Yang X, Yu X, Li B, Ding A, Wang W, Sun Y. Analysis of rhizosphere bacterial communities of tobacco resistant and non-resistant to bacterial wilt in different regions. Sci Rep 2022; 12:18309. [PMID: 36316337 PMCID: PMC9622857 DOI: 10.1038/s41598-022-20293-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Accepted: 09/12/2022] [Indexed: 11/06/2022] Open
Abstract
Tobacco bacterial wilt has seriously affected tobacco production. Ethyl methanesulfonate (EMS) induced tobacco bacterial wilt resistant mutants are important for the control of tobacco bacterial wilt. High-throughput sequencing technology was used to study the rhizosphere bacterial community assemblages of bacterial wilt resistant mutant tobacco rhizosphere soil (namely KS), bacterial wilt susceptible tobacco rhizosphere soil (namely GS) and bulk soil (namely BS) in Xuancheng, Huanxi, Yibin and Luzhou. Alpha analysis showed that the bacterial community diversity and richness of KS and GS in the four regions were not significantly different. However, analysis of intergroup variation in the top 15 bacterial communities in terms of abundance showed that the bacterial communities of KS and GS were significantly different from BS, respectively. In addition, pH, alkali-hydrolysable nitrogen (AN) and soil organic carbon (SOC) were positively correlated with the bacterial community of KS and negatively correlated with GS in the other three regions except Huanxi. Network analysis showed that the three soils in the four regions did not show a consistent pattern of network complexity. PICRUSt functional prediction analysis showed that the COG functions were similar in all samples. All colonies were involved in RNA processing and modification, chromatin structure and dynamics, etc. In conclusion, our experiments showed that rhizosphere bacterial communities of tobacco in different regions have different compositional patterns, which are strongly related to soil factors.
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Affiliation(s)
- Haoqi Shi
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China ,grid.410727.70000 0001 0526 1937Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Peiwen Xu
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China ,grid.410727.70000 0001 0526 1937Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Shengxin Wu
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou, 350003 China
| | - Wen Yu
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou, 350003 China
| | - Yazhi Cheng
- Fujian Institute of Tobacco Agricultural Sciences, Fuzhou, 350003 China
| | - Zhihua Chen
- Sichuan Tobacco Science Institute, Sichuan Branch of China National Tobacco Corporation, Chengdu, 615000 China
| | - Xingyou Yang
- Sichuan Tobacco Science Institute, Sichuan Branch of China National Tobacco Corporation, Chengdu, 615000 China
| | - Xiangwen Yu
- Sichuan Tobacco Science Institute, Sichuan Branch of China National Tobacco Corporation, Chengdu, 615000 China
| | - Bingjie Li
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China ,grid.410727.70000 0001 0526 1937Graduate School of Chinese Academy of Agricultural Sciences, Beijing, 100081 China
| | - Anming Ding
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China
| | - Weifeng Wang
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China
| | - Yuhe Sun
- grid.464493.80000 0004 1773 8570Key Laboratory for Tobacco Gene Resources, Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao, 266101 China
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