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Nouri M, Rahimnejad M, Najafpour G, Moghadamnia AA. Fabrication of an ultra-sensitive electrochemical DNA biosensor based on CT-DNA/NiFe 2O 4NPs/Au/CPE for detecting rizatriptan benzoate. ENVIRONMENTAL RESEARCH 2023; 236:116801. [PMID: 37558112 DOI: 10.1016/j.envres.2023.116801] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/24/2023] [Accepted: 07/29/2023] [Indexed: 08/11/2023]
Abstract
A novel and first electrochemical biosensor based on Deoxyribonucleic acid (DNA) as a biological component to measure an antimigraine drug, rizatriptan benzoate (RZB) for patients under treatment in biological samples was developed. A carbon paste electrode (CPE) was modified by calf thymus (CT) double-stranded (ds)-DNA, nickel ferrite magnetic nanoparticles (NiFe2O4NPs), and gold nanoparticles (AuNPs). The morphology of the CT-DNA/NiFe2O4NPs/AuNPs/CPE was characterized by Field emission scanning electron microscope (FESEM). The presence of NiFe2O4NPs and AuNPs was confirmed by energy-dispersive X-ray spectroscopy (EDS) image of the NiFe2O4NPs/AuNPs/CPE surface. Electrochemical impedance spectroscopy (EIS) and cyclic voltammetry (CV) were used to determine the structure and electrochemical characteristics of the CT-DNA/NiFe2O4NPs/AuNPs/CPE. Differential pulse voltammetry (DPV) was used to investigate the electrochemical behavior of RZB. Chronoamperometry (CA) was applied to study the effect of CT-DNA immobilization time on the peak oxidation current of RZB accumulated on the surface of the CT-DNA/NiFe2O4NPs/AuNPs/CPE. The results showed that, under optimum conditions, the prepared electrode responded linearly to RZB concentrations between 0.01 and 2.0 μM, with a 0.0033 μM detection limit (LOD) and 0.01 μM limit of quantification (LOQ). The parameters influencing the biosensor performance (temperature, CT-DNA immobilization time, and RZB/CT-DNA accumulation time) were optimized. DPV showed the displacement of the peak potential towards positive values and the reduction of its current, indicating that the drug could intercalate between the guanine base pairs of CT-DNA. Our biosensor was successfully applied for RZB measurement in human urine, blood serum, plasma samples, and tablets. The presented biosensor was fast response, sensitive, selective, cost-effective, and easy-to-use for RZB determination in pharmaceutical formulations and biological samples.
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Affiliation(s)
- Maedeh Nouri
- Biofuel and Renewable Energy Research Center, Department of Biotechnology, Faculty of Chemical Engineering, Babol Noshirvani University of Technology, Babol, Iran
| | - Mostafa Rahimnejad
- Biofuel and Renewable Energy Research Center, Department of Biotechnology, Faculty of Chemical Engineering, Babol Noshirvani University of Technology, Babol, Iran.
| | - Ghasem Najafpour
- Biotechnology Research Laboratory, Department of Biotechnology, Faculty of Chemical Engineering, Babol Noshirvani University of Technology, Babol, Iran
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2
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A new electrochemical DNA biosensor based on modified carbon paste electrode using graphene quantum dots and ionic liquid for determination of topotecan. Microchem J 2019. [DOI: 10.1016/j.microc.2019.104085] [Citation(s) in RCA: 69] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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3
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Topkaya SN, Cetin AE. Determination of Electrochemical Interaction between 2‐(1H‐benzimidazol‐2‐yl) Phenol and DNA Sequences. ELECTROANAL 2019. [DOI: 10.1002/elan.201900199] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Seda Nur Topkaya
- Department of Analytical Chemistry, Faculty of PharmacyIzmir Katip Celebi University 35620, Cigli Izmir TURKEY
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4
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Bangde PS, Prajapati DS, Dandekar PP, Kapdi AR. New Water‐Soluble N‐Heterocyclic Carbene‐Palladium Complexes as Promising Anti‐Tumor Agents: Investigating DNA and Protein Interactions. ChemistrySelect 2018. [DOI: 10.1002/slct.201800535] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Prachi S. Bangde
- Department of Pharmaceutical TechnologyInstitute of Chemical Technology Nathalal Parekh Road, Matunga Mumbai-400019 India
| | - Dharmendra S. Prajapati
- Department of ChemistryInstitute of Chemical Technology Nathalal Parekh Road, Matunga Mumbai-400019 India
| | - Prajakta P. Dandekar
- Department of Pharmaceutical TechnologyInstitute of Chemical Technology Nathalal Parekh Road, Matunga Mumbai-400019 India
| | - Anant R. Kapdi
- Department of ChemistryInstitute of Chemical Technology Nathalal Parekh Road, Matunga Mumbai-400019 India
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Temerk Y, Ibrahim M, Ibrahim H, Schuhmann W. Comparative studies on the interaction of anticancer drug irinotecan with dsDNA and ssDNA. RSC Adv 2018; 8:25387-25395. [PMID: 35539780 PMCID: PMC9082630 DOI: 10.1039/c8ra03231a] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Accepted: 07/10/2018] [Indexed: 11/21/2022] Open
Abstract
The binding mode and thermodynamic characteristics of the anticancer drug irinotecan (Irino) with dsDNA were investigated. The interaction of Irino with dsDNA indicated its intercalation into the base stacking domain of dsDNA double helix.
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Affiliation(s)
- Yassien Temerk
- Chemistry Department
- Faculty of Science
- Assiut University
- Assiut
- Egypt
| | - Mohamed Ibrahim
- Department of Clinical Pharmacy Research
- Institute for Research and Medical Consultation
- Imam Abdulrahman Bin Faisal University
- Dammam 31441
- Saudi Arabia
| | - Hossieny Ibrahim
- Chemistry Department
- Faculty of Science
- Assiut University
- Assiut
- Egypt
| | - Wolfgang Schuhmann
- Anal. Chem. – Elektroanalytik & Sensorik
- Ruhr-Universitat Bochum
- D-44780 Bochum
- Germany
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Machini WBS, Oliveira-Brett AM. Antileishmanial Drug Miltefosine-dsDNA Interaction in situ
Evaluation with a DNA-Electrochemical Biosensor. ELECTROANAL 2017. [DOI: 10.1002/elan.201700581] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- W. B. S. Machini
- Department of Chemistry, Faculty of Science and Technology; University of Coimbra; 3004-535 Coimbra Portugal
| | - A. M. Oliveira-Brett
- Department of Chemistry, Faculty of Science and Technology; University of Coimbra; 3004-535 Coimbra Portugal
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7
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Wang J, Gu Y, Liu L, Wang C, Wang J, Ding S, Li J, Qiu L, Jiang P. Novel application of fluorescence coupled capillary electrophoresis to resolve the interaction between the G-quadruplex aptamer and thrombin. J Sep Sci 2017; 40:3161-3167. [PMID: 28594110 DOI: 10.1002/jssc.201700456] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 05/27/2017] [Accepted: 05/31/2017] [Indexed: 12/17/2022]
Abstract
The dynamic binding status between the thrombin and its G-quadruplex aptamers and the stability of its interaction partners were probed using our previously established fluorescence-coupled capillary electrophoresis method. A 29-nucleic acid thrombin binding aptamer was chosen as a model to study its binding affinity with the thrombin ligand. First, the effects of the cations on the formation of G-quadruplex from unstructured 29-nucleic acid thrombin binding aptamer were examined. Second, the rapid binding kinetics between the thrombin and 6-carboxyfluorescein labeled G-quadruplex aptamer was measured. Third, the stability of G-quadruplex aptamer-thrombin complex was also examined in the presence of the interfering species. Remarkably, it was found that the complementary strand of 29-nucleic acid thrombin binding aptamer could compete with G-quadruplex aptamer and thus disassociated the G-quadruplex structure into an unstructured aptamer. These data suggest that our in-house established fluorescence-coupled capillary electrophoresis assay could be applied to binding studies of the G-quadruplex aptamers, thrombin, and their ligands, while overcoming the complicated and costly approaches currently available.
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Affiliation(s)
- Jianhao Wang
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Yaqin Gu
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Li Liu
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Cheli Wang
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Jianpeng Wang
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Shumin Ding
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Jinping Li
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China.,Department of Biomedical Science, Mercer University School of Medicine, Savannah, GA, USA
| | - Lin Qiu
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
| | - Pengju Jiang
- School of Pharmaceutical Engineering and Life Science, Changzhou University, Changzhou, Jiangsu, P.R. China
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8
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Ribeiro JA, Pereira CM, Silva F. Electrochemistry of the Interaction between Bioactive Drugs Daunorubicin and Dopamine and DNA at a Water/Oil Interface. Electrochim Acta 2015. [DOI: 10.1016/j.electacta.2015.08.074] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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9
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Yu B, Jiao M, Cong H, Shu X, Yang S. A novel diazoresin/poly(N-vinyl aminobutyric acid) covalent capillary coating for the analysis of proteins by capillary electrophoresis. J Sep Sci 2014; 37:725-30. [PMID: 24449602 DOI: 10.1002/jssc.201301117] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2013] [Revised: 12/27/2013] [Accepted: 12/27/2013] [Indexed: 12/19/2022]
Abstract
A novel method for the preparation of covalently linked capillary coatings of poly(N-vinyl aminobutyric acid) (PVAA) obtained from hydrolyzed polyvinylpyrrolidone was demonstrated using photosensitive diazoresin (DR) as a coupling agent. A layer-by-layer self-assembled film of DR and PVAA based on ionic bonding was first fabricated on the inner wall of capillary, then ionic bonding was converted into covalent bonding after treatment with UV light through a unique photochemical reaction of DR. The covalently bonded coatings suppressed protein adsorption on the inner surface of the capillary, and thus a baseline separation of lysozyme, cytochrome c, BSA, amyloglucosidase, and myoglobin was achieved using CE. Compared with bare capillary or noncovalently bonded DR/PVAA coatings, the covalently linked DR/PVAA capillary coatings not only improved the CE separation performance for proteins, but also exhibited good stability and repeatability. Due to the replacement of the highly toxic and moisture-sensitive silane coupling agent by DR in the covalent coating preparation, this method may provide a green and easy way to make covalently coated capillaries for CE.
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Affiliation(s)
- Bing Yu
- College of Chemical Engineering, Qingdao University, Qingdao, China; Laboratory for New Fiber Materials and Modern Textile - The Growing Base for State Key Laboratory, Qingdao University, China
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10
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DNA-binding of nickel(II), copper(II) and zinc(II) complexes: Structure–affinity relationships. Coord Chem Rev 2013. [DOI: 10.1016/j.ccr.2013.02.023] [Citation(s) in RCA: 203] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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11
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Jamali AA, Tavakoli A, Ezzati Nazhad Dolatabadi J. Analytical overview of DNA interaction with Morin and its metal complexes. Eur Food Res Technol 2012. [DOI: 10.1007/s00217-012-1778-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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12
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Combination of chromatographic and chemometric methods to study the interactions between DNA strands. Anal Chim Acta 2012; 722:34-42. [DOI: 10.1016/j.aca.2012.02.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2011] [Revised: 01/31/2012] [Accepted: 02/02/2012] [Indexed: 02/07/2023]
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13
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Yunus G, Srivastava S, Gupta VD. Drug-DNA Interaction: A Theoretical Study of the Stability of CP-DNA Binding with Thionine. ACTA ACUST UNITED AC 2012. [DOI: 10.4236/ojapps.2012.22013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Azab HA, Hussein BHM, El-Falouji AI. Synthesis of novel Eu(III) luminescent probe based on 9- acridinecarboxylic acid skelton for sensing of ds-DNA. J Fluoresc 2011; 22:639-49. [PMID: 22065175 DOI: 10.1007/s10895-011-1000-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2011] [Accepted: 10/14/2011] [Indexed: 10/15/2022]
Abstract
Eu(III)-9-acridinecarboxylate (9-ACA) complex was synthesized and characterized by elemental analysis, conductivity measurement, IR spectroscopy, thermal analysis, mass spectroscopy, (1)H-NMR, fluorescence and ultraviolet spectra. The results indicated that the composition of this complex is [Eu(III)-(9-ACA)(2)(NCS)(C(2)H(5)OH)(2)] 2.5 H(2)O and the oxygen of the carbonyl group coordinated to Eu(III). The interaction between the complex with nucleotides guanosine 5'- monophosphate (5'-GMP), adenosine 5'-diphosphates (5'-ADP), inosine (5'-IMP) and CT-DNA was studied by fluorescence spectroscopy. The fluorescence intensity of Eu(III)-9-acridinecarboxylate complex was enhanced with the addition of CT-DNA. The effect of pH values on the fluorescence intensity of Eu(III) complex was investigated. Under experimental conditions, the linear range was 9-50 ng mL(-1) for calf thymus DNA (CT- DNA) and the corresponding detection limit was 5 ng mL(-1). The results showed that Eu(III)-(9-ACA)(2) complex binds to CT-DNA with stability constant of 2.41 × 10(4) M.
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Affiliation(s)
- Hassan A Azab
- Chemistry Department, Faculty of Science, Suez Canal University, Ismailia, Egypt.
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15
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Oh E, Hasan MN, Jamshed M, Park SH, Hong HM, Song EJ, Yoo YS. Growing trend of CE at the omics level: The frontier of systems biology. Electrophoresis 2010; 31:74-92. [DOI: 10.1002/elps.200900410] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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16
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Araya F, Skellern GG, Waigh RD. Quantification of binding data using capillary electrophoresis. Methods Mol Biol 2010; 613:71-88. [PMID: 19997878 DOI: 10.1007/978-1-60327-418-0_5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
The design of new DNA-targeted molecules, primarily for use in the therapy of diseases such as cancer, relies on the assessment of both affinity for DNA and selectivity of binding to chosen base pair sequences. Capillary electrophoresis, with a polymer added to the running buffer, is very well suited to the separation of oligonucleotides in the range 12-20 base pairs, with the separation based on length rather than base pair sequence. In this way, it is possible to conduct competition experiments using mixtures of up to four oligonucleotides and giving a direct measure of the relative affinity of high-affinity ligands, specifically those binding in the minor groove with slow on-off rates. The relative affinities can be securely quantified, even where the affinities are very high. Working from first principles, it is shown that the measurement of absolute affinities presents various problems, not least that the concentration of DNA and ligand used in the experiment will affect the magnitude of K(d), which is not constant.
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Affiliation(s)
- Fitsumbirhan Araya
- Institute of Pharmacy and Biomedical Sciences, University of Strathclyde, Glasgow, UK
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17
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Zhang G, Guo J, Pan J, Chen X, Wang J. Spectroscopic studies on the interaction of morin–Eu(III) complex with calf thymus DNA. J Mol Struct 2009. [DOI: 10.1016/j.molstruc.2009.02.011] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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18
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Liu X, Dahdouh F, Salgado M, Gomez FA. Recent Advances in Affinity Capillary Electrophoresis (2007). J Pharm Sci 2009; 98:394-410. [DOI: 10.1002/jps.21452] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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19
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Recent applications of capillary electrophoresis–mass spectrometry (CE–MS): CE performing functions beyond separation. Anal Chim Acta 2008; 627:3-24. [DOI: 10.1016/j.aca.2008.04.023] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2008] [Revised: 04/02/2008] [Accepted: 04/08/2008] [Indexed: 11/18/2022]
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20
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Kostal V, Katzenmeyer J, Arriaga EA. Capillary electrophoresis in bioanalysis. Anal Chem 2008; 80:4533-50. [PMID: 18484738 DOI: 10.1021/ac8007384] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Vratislav Kostal
- Department of Chemistry, University of Minnesota, Minneapolis, Minnesota 55455, USA
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