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Kuntner M, Čandek K, Gregorič M, Turk E, Hamilton CA, Chamberland L, Starrett J, Cheng RC, Coddington JA, Agnarsson I, Bond JE. Increasing Information Content and Diagnosability in Family-Level Classifications. Syst Biol 2023; 72:964-971. [PMID: 37161751 PMCID: PMC10405354 DOI: 10.1093/sysbio/syad021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Revised: 03/03/2023] [Accepted: 04/13/2023] [Indexed: 05/11/2023] Open
Abstract
Higher-level classifications often must account for monotypic taxa representing depauperate evolutionary lineages and lacking synapomorphies of their better-known, well-defined sister clades. In a ranked (Linnean) or unranked (phylogenetic) classification system, discovering such a depauperate taxon does not necessarily invalidate the rank classification of sister clades. Named higher taxa must be monophyletic to be phylogenetically valid. Ranked taxa above the species level should also maximize information content, diagnosability, and utility (e.g., in biodiversity conservation). In spider classification, families are the highest rank that is systematically catalogued, and incertae sedis is not allowed. Consequently, it is important that family-level taxa be well defined and informative. We revisit the classification problem of Orbipurae, an unranked suprafamilial clade containing the spider families Nephilidae, Phonognathidae, and Araneidae sensu stricto. We argue that, to maximize diagnosability, information content, conservation utility, and practical taxonomic considerations, this "splitting" scheme is superior to its recently proposed alternative, which lumps these families together as Araneidae sensu lato. We propose to redefine Araneidae and recognize a monogeneric spider family, Paraplectanoididae fam. nov. to accommodate the depauperate lineage Paraplectanoides. We present new subgenomic data to stabilize Orbipurae topology which also supports our proposed family-level classification. Our example from spiders demonstrates why classifications must be able to accommodate depauperate evolutionary lineages, for example, Paraplectanoides. Finally, although clade age should not be a criterion to determine rank, other things being equal, comparable ages of similarly ranked taxa do benefit comparative biology. [Classification, family rank, phylogenomics, systematics, monophyly, spider phylogeny.].
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Affiliation(s)
- Matjaž Kuntner
- Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Novi trg 2, SI-1001, Ljubljana, Slovenia
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- State Key Laboratory of Biocatalysis and Enzyme Engineering and Centre for Behavioural Ecology and Evolution, School of Life Sciences, Hubei University, Wuhan 430062 Hubei, China
| | - Klemen Čandek
- Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
| | - Matjaž Gregorič
- Jovan Hadži Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Novi trg 2, SI-1001, Ljubljana, Slovenia
| | - Eva Turk
- University of Ljubljana, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
- Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, SI-1000, Ljubljana, Slovenia
| | - Chris A Hamilton
- Department of Entomology, Plant Pathology and Nematology, University of Idaho, 875 Perimeter Dr. MS 2329, Moscow, ID 83844-2329, USA
| | - Lisa Chamberland
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
| | - James Starrett
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
| | - Ren-Chung Cheng
- Department of Life Sciences, National Chung Hsing University, No.145 Xingda Rd., South Dist., Taichung City 402, Taiwan
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
| | - Ingi Agnarsson
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- State Key Laboratory of Biocatalysis and Enzyme Engineering and Centre for Behavioural Ecology and Evolution, School of Life Sciences, Hubei University, Wuhan 430062 Hubei, China
- Faculty of Life- and Environmental Sciences, University of Iceland, Sturlugata 7, 102 Reykjavik, Iceland
| | - Jason E Bond
- Department of Entomology and Nematology, University of California Davis, 1 Shields Ave., Davis, CA 95616, USA
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Choi EH, Hwang UW. Complete mitochondrial genome of a golden orb-web spider Trichonephila clavata (Chelicerata, Arachnida) from South Korea. Mitochondrial DNA B Resour 2023; 8:723-725. [PMID: 37416894 PMCID: PMC10321228 DOI: 10.1080/23802359.2021.1955633] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2021] [Accepted: 07/12/2021] [Indexed: 07/08/2023] Open
Abstract
The mitochondrial genome of a golden orb-web spider Trichonephila clavata (L. Koch, 1878) from South Korea is determined and characterized in detail, which is the second mitochondrial genome reported from this species: the first was published from the Chinese sample by Pan et al. (2016). It was 14,436 bp in length being composed of 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes, and one control region (CR). It has a base composition of 35.99% for 'A,' 14.88% for 'G,' 9.09% for 'C,' and 40.04% for 'T.' Comparing the South Korean and Chinese mitochondrial genomes, we observed 8% nucleotide sequence differences between their CRs, caused by the different numbers and sorts of possessed tandem repeats, suggesting a promising molecular marker to distinguish South Korean individuals from Chinese ones. The phylogenetic trees using the maximum likelihood (ML) method were reconstructed with nucleotides (without 3rd codon position) and amino acids from 13 PCGs, respectively, which consistently confirmed that T. clavata (Subfamily Nephilinae) from South Korea and China are clustered together, distinctly separated from the other subfamily Araneinae in the monophyletic family Araneidae.
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Affiliation(s)
- Eun Hwa Choi
- Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, South Korea
| | - Ui Wook Hwang
- Department of Biology Education, Teachers College and Institute for Phylogenomics and Evolution, Kyungpook National University, Daegu, South Korea
- Institute for Korean Herb-Bio Convergence Promotion, Kyungpook National University, Daegu, South Korea
- School of Industrial Technology Advances, Kyungpook National University, Daegu, South Korea
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Wen R, Wang K, Zan X. Characterization of two full-length tubuliform silk gene sequences from Neoscona theisi reveals intragenic concerted evolution and multiple copies in genome. Int J Biol Macromol 2022; 223:1015-1023. [PMID: 36375671 DOI: 10.1016/j.ijbiomac.2022.11.082] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/19/2022] [Accepted: 11/03/2022] [Indexed: 11/12/2022]
Abstract
Orb-web weaving spiders use a variety of silk types for particular tasks, and each silk type is composed of at least two spider silk proteins (spidroins). In the early stage of divergence, however, the molecular evolutionary processes act on spidroin variants are still unclear because of a lack of knowledge for full-length paralogous and orthologous gene sequences among closely related species. Here, we present two complete gene sequences encoding the tubuliform spidroin TuSp1 variants (TuSp1-v2 and TuSp1-v3) from orb-weaving spider Neoscona theisi. Both N. theisi TuSp1-v2 and TuSp1-v3 genes contain a single enormous exon (14,139 bp for TuSp1-v2 and 13,152 bp for TuSp1-v3) and dozens of tandemly arrayed repeats (25 repeats for TuSp1-v2 and 23 repeats for TuSp1-v3) with extreme intragenic homogenization. The pattern of expression for these two spidroins revealed that the level of TuSp1-v3 mRNA is ~3-fold higher than that of TuSp1-v2 in tubuliform gland. Phylogenetic analyses of spidroins not only show the occurrence of a gene duplication event for TuSp1-v2 and TuSp1-v3 in the common ancestor of the Neoscona and Araneus lineage but reinforce the role of concerted evolution for the extreme homogenization of TuSp1 repeats.
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Affiliation(s)
- Rui Wen
- School of Ophthalmology and Optometry, Eye Hospital, School of Biomedical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang Province 325035, China; Oujiang Laboratory, Wenzhou Key Laboratory of Perioperative Medicine, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China.
| | - Kangkang Wang
- Oujiang Laboratory, Wenzhou Key Laboratory of Perioperative Medicine, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China
| | - Xingjie Zan
- School of Ophthalmology and Optometry, Eye Hospital, School of Biomedical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang Province 325035, China; Oujiang Laboratory, Wenzhou Key Laboratory of Perioperative Medicine, Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou, Zhejiang 325000, China.
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Single-Island Endemism despite Repeated Dispersal in Caribbean Micrathena (Araneae: Araneidae): An Updated Phylogeographic Analysis. DIVERSITY 2022. [DOI: 10.3390/d14020128] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Island biogeographers have long sought to elucidate the mechanisms behind biodiversity genesis. The Caribbean presents a unique stage on which to analyze the diversification process, due to the geologic diversity among the islands and the rich biotic diversity with high levels of island endemism. The colonization of such islands may reflect geologic heterogeneity through vicariant processes and/ or involve long-distance overwater dispersal. Here, we explore the phylogeography of the Caribbean and proximal mainland spiny orbweavers (Micrathena, Araneae), an American spider lineage that is the most diverse in the tropics and is found throughout the Caribbean. We specifically test whether the vicariant colonization via the contested GAARlandia landbridge (putatively emergent 33–35 mya), long-distance dispersal (LDD), or both processes best explain the modern Micrathena distribution. We reconstruct the phylogeny and test biogeographic hypotheses using a ‘target gene approach’ with three molecular markers (CO1, ITS-2, and 16S rRNA). Phylogenetic analyses support the monophyly of the genus but reject the monophyly of Caribbean Micrathena. Biogeographical analyses support five independent colonizations of the region via multiple overwater dispersal events, primarily from North/Central America, although the genus is South American in origin. There is no evidence for dispersal to the Greater Antilles during the timespan of GAARlandia. Our phylogeny implies greater species richness in the Caribbean than previously known, with two putative species of M. forcipata that are each single-island endemics, as well as deep divergences between the Mexican and Floridian M. sagittata. Micrathena is an unusual lineage among arachnids, having colonized the Caribbean multiple times via overwater dispersal after the submergence of GAARlandia. On the other hand, single-island endemism and undiscovered diversity are nearly universal among all but the most dispersal-prone arachnid groups in the Caribbean.
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Arnedo MA, Hormiga G. Repeated colonization, adaptive radiation and convergent evolution in the sheet-weaving spiders (Linyphiidae) of the south Pacific Archipelago of Juan Fernandez. Cladistics 2021; 37:317-342. [PMID: 34478200 DOI: 10.1111/cla.12437] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/18/2020] [Indexed: 12/25/2022] Open
Abstract
We report on the colonization and diversification of linyphiid spiders in the Pacific oceanic archipelago of Juan Fernandez. About 50 spider species occur naturally in these islands, most of them endemic and about half of them are linyphiids. Linyphiidae includes no fewer than 15 species of Laminacauda and three of Neomaso (with several additional undescribed species in the latter genus), all of them single island endemics. There are three additional linyphiid endemic genera, two monotypic and one, Juanfernandezia, with two species. Unlike the rather uniform somatic morphology and small ground sheet webs of the continental Laminacauda and Neomaso species, the Juan Fernandez endemics exhibit morphological features and life history traits that are very rare or unknown in any other linyphiids. A multi-locus phylogenetic analysis confirms at least five independent Juan Fernandez colonizations of Linyphiidae, two within the same genus, and three of which underwent subsequent local diversification. Different calibrations suggest alternative colonization timelines, some at odds with island ages, but all agree on similar diversification timings of the endemic lineages. Rare phenotypic traits (e.g. gigantism, massive chelicerae or elongated legs) evolved multiple times independently within the islands. Based on the remarkable levels of eco-phenotypic differentiation in locally diversified species showing densely packed distributions, we propose that Laminacauda, and probably Neomaso, constitute a case of adaptive radiation.
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Affiliation(s)
- Miquel A Arnedo
- Department of Evolutionary Biology, Ecology & Environmental Sciences and Biodiversity Research Institute (IRBio), Universitat de Barcelona, Barcelona, Catalonia, 08028, Spain
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, Washington, D.C., 20052, USA
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Responte M, Chiu Y, Peng P, Brown RM, Dai C, Su Y. Northward geographic diversification of a kleptoparasitic spider Argyrodes lanyuensis (Araneae, Theridiidae) from the Philippine Archipelago to Orchid Island. Ecol Evol 2021; 11:11241-11266. [PMID: 34429915 PMCID: PMC8366866 DOI: 10.1002/ece3.7910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 06/17/2021] [Accepted: 06/24/2021] [Indexed: 11/10/2022] Open
Abstract
Oceanic islands are unique geographic systems that promote local adaptations and allopatric speciation in many of their highly endemic taxa. This is a common case in the Philippine Archipelago, where numerous unrelated taxa on islands have been inferred to have diversified in isolation. However, few cases have been reported in invertebrates especially among parasitic organisms. Here, we tested for biogeographical structure in novel populations of the "generalist" kleptoparasitic spider, Argyrodes lanyuensis Yoshida, Tso & Severinghaus, 1998 in the Philippines. Results showed that, in addition to Orchid/Lanyu Island, this species has a wide geographic distribution in the Philippine Archipelago. The estimated divergence time of this lineage using the mitochondrial cytochrome oxidase 1 (mt-CO1) suggests that this species diverged ca 3.12 MYA, during the Pliocene. Two reciprocal monophyletic clades were elucidated in A. lanyuensis, but with limited differentiation across Pleistocene Aggregate Island Complex (PAIC) boundaries and modern-day islands. However, in our analyses of morphological variation, we identified two phenotypically differentiated units in males (Orchid Island, Taiwan + Luzon, Philippine PAIC populations vs. Palawan + West Visayan + Mindanao PAIC populations). We infer that this species diverged in the southern portion of the Philippine Archipelago and only recently colonized Orchid Island. Our study provides new information on the extensive distribution of A. lanyuensis outside Orchid Island, Taiwan, but we documented a very limited geographically associated genetic variation. Our study points to behavioral phenomena such as foraging behavior as essential contributor to the evolutionary process of species diversification, in contrast to the traditionally invoked geographic drivers of divergence.
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Affiliation(s)
- Mae Responte
- Graduate Institute of MedicineCollege of MedicineKaohsiung Medical UniversityKaohsiungTaiwan
- Department of Biological Sciences and Environmental StudiesCollege of Science and MathematicsUniversity of the Philippines MindanaoDavao CityPhilippines
| | - Yi‐Fan Chiu
- Department of Biomedical Science and Environmental BiologyCollege of Life ScienceKaohsiung Medical UniversityKaohsiungTaiwan
| | - Po Peng
- Department of Biomedical Science and Environmental BiologyCollege of Life ScienceKaohsiung Medical UniversityKaohsiungTaiwan
| | - Rafe M. Brown
- Biodiversity InstituteDepartment of Ecology and Evolutionary BiologyUniversity of KansasLawrenceKansasUSA
| | - Chia‐Yen Dai
- Department of MedicineCollege of MedicineKaohsiung Medical UniversityKaohsiungTaiwan
| | - Yong‐Chao Su
- Department of Biomedical Science and Environmental BiologyCollege of Life ScienceKaohsiung Medical UniversityKaohsiungTaiwan
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Yong HS, Song SL, Chua KO, Wayan Suana I, Eamsobhana P, Tan J, Lim PE, Chan KG. Complete mitochondrial genomes and phylogenetic relationships of the genera Nephila and Trichonephila (Araneae, Araneoidea). Sci Rep 2021; 11:10680. [PMID: 34021208 PMCID: PMC8139964 DOI: 10.1038/s41598-021-90162-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2021] [Accepted: 04/29/2021] [Indexed: 02/04/2023] Open
Abstract
Spiders of the genera Nephila and Trichonephila are large orb-weaving spiders. In view of the lack of study on the mitogenome of these genera, and the conflicting systematic status, we sequenced (by next generation sequencing) and annotated the complete mitogenomes of N. pilipes, T. antipodiana and T. vitiana (previously N. vitiana) to determine their features and phylogenetic relationship. Most of the tRNAs have aberrant clover-leaf secondary structure. Based on 13 protein-coding genes (PCGs) and 15 mitochondrial genes (13 PCGs and two rRNA genes), Nephila and Trichonephila form a clade distinctly separated from the other araneid subfamilies/genera. T. antipodiana forms a lineage with T. vitiana in the subclade containing also T. clavata, while N. pilipes forms a sister clade to Trichonephila. The taxon vitiana is therefore a member of the genus Trichonephila and not Nephila as currently recognized. Studies on the mitogenomes of other Nephila and Trichonephila species and related taxa are needed to provide a potentially more robust phylogeny and systematics.
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Affiliation(s)
- Hoi-Sen Yong
- Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Sze-Looi Song
- Institute for Advanced Studies, University of Malaya, 50603, Kuala Lumpur, Malaysia.
- Institute of Ocean and Earth Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia.
| | - Kah-Ooi Chua
- Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - I Wayan Suana
- Faculty of Science and Mathematics, Mataram University, Mataram, Indonesia
| | - Praphathip Eamsobhana
- Department of Parasitology, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand
| | - Ji Tan
- Department of Agricultural and Food Science, Universiti Tunku Abdul Rahman, 31900, Kampar, Perak, Malaysia
| | - Phaik-Eem Lim
- Institute of Ocean and Earth Sciences, University of Malaya, 50603, Kuala Lumpur, Malaysia
| | - Kok-Gan Chan
- Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia
- Guangdong Provincial Key Laboratory of Marine Biology, Institute of Marine Sciences, Shantou University, Shantou, 515063, China
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Macharoenboon K, Siriwut W, Jeratthitikul E. A review of the taxonomy of spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae (Araneae, Araneidae) in Thailand. Zookeys 2021; 1032:17-62. [PMID: 33958915 PMCID: PMC8065025 DOI: 10.3897/zookeys.1032.62001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2020] [Accepted: 03/17/2021] [Indexed: 11/12/2022] Open
Abstract
Spiny-backed orb-weaving spiders of the subfamily Gasteracanthinae are broadly distributed in the Old World. Despite their use as a model species in biology, evolution, and behavior because of their extraordinary characteristics, the systematics of this group of spiders are still poorly understood. This study elucidates the systematics of Gasteracanthinae in Thailand based on morphological and molecular-based analyses. In total, seven species from three genera, namely Gasteracantha, Macracantha, and Thelacantha, were recorded in Thailand. Shape of abdominal spines, pattern of sigilla, and female genitalia are significant characters for species identification. In contrast, coloration shows highly intraspecific variation in most species within Gasteracanthinae. A phylogenetic tree based on partial sequences of COI, 16S, and H3 genes recovered Gasteracanthinae as a monophyletic group and supports the existence of three clades. Gasteracantha hasselti is placed as a sister taxon to Macracantha arcuata. Hence, we propose to transfer G. hasselti to Macracantha. Moreover, molecular species delimitation analyses (ABGD, bPTP, and GMYC) using 675 bp of COI gene support all nominal species, with evidence of possible additional cryptic species.
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Affiliation(s)
- Kongkit Macharoenboon
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
| | - Warut Siriwut
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
| | - Ekgachai Jeratthitikul
- Animal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol University, Bangkok 10400, ThailandAnimal Systematics and Molecular Ecology Laboratory, Department of Biology, Faculty of Science, Mahidol UniversityBangkokThailand
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Phenotypic plasticity and the colonization of new habitats: a study of a colonial spider in the Chaco region and the Cerrado. Evol Ecol 2021. [DOI: 10.1007/s10682-021-10105-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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Abstract
Spiders (Araneae) make up a remarkably diverse lineage of predators that have successfully colonized most terrestrial ecosystems. All spiders produce silk, and many species use it to build capture webs with an extraordinary diversity of forms. Spider diversity is distributed in a highly uneven fashion across lineages. This strong imbalance in species richness has led to several causal hypotheses, such as codiversification with insects, key innovations in silk structure and web architecture, and loss of foraging webs. Recent advances in spider phylogenetics have allowed testing of some of these hypotheses, but results are often contradictory, highlighting the need to consider additional drivers of spider diversification. The spatial and historical patterns of diversity and diversification remain contentious. Comparative analyses of spider diversification will advance only if we continue to make progress with studies of species diversity, distribution, and phenotypic traits, together with finer-scale phylogenies and genomic data.
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Affiliation(s)
- Dimitar Dimitrov
- Department of Natural History, University Museum of Bergen, University of Bergen, 5020 Bergen, Norway;
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, Washington, DC 20052, USA;
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Purchart L, Hula V, Fric ZF. Comparison of the biogeographic origin of three terrestrial arthropod groups in the Socotra Archipelago (Yemen). RENDICONTI LINCEI-SCIENZE FISICHE E NATURALI 2020. [DOI: 10.1007/s12210-020-00926-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Chamberland L, Salgado-Roa FC, Basco A, Crastz-Flores A, Binford GJ, Agnarsson I. Phylogeography of the widespread Caribbean spiny orb weaver Gasteracantha cancriformis. PeerJ 2020; 8:e8976. [PMID: 32391201 PMCID: PMC7196328 DOI: 10.7717/peerj.8976] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2020] [Accepted: 03/24/2020] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND Modern molecular analyses are often inconsistent with pre-cladistic taxonomic hypotheses, frequently indicating higher richness than morphological taxonomy estimates. Among Caribbean spiders, widespread species are relatively few compared to the prevalence of single island endemics. The taxonomic hypothesis Gasteracantha cancriformis circumscribes a species with profuse variation in size, color and body form. Distributed throughout the Neotropics, G. cancriformis is the only morphological species of Gasteracantha in the New World in this globally distributed genus. METHODS We inferred phylogenetic relationships across Neotropical populations of Gasteracantha using three target genes. Within the Caribbean, we estimated genetic diversity, population structure, and gene flow among island populations. RESULTS Our findings revealed a single widespread species of Gasteracantha throughout the Caribbean, G. cancriformis, while suggesting two recently divergent mainland populations that may represent separate species, diverging linages, or geographically isolated demes. The concatenated and COI (Cytochrome c oxidase subunit 1) phylogeny supported a Caribbean clade nested within the New World. Genetic variability was high between island populations for our COI dataset; however, gene flow was also high, especially between large, adjacent islands. We found structured genetic and morphological variation within G. cancriformis island populations; however, this variation does not reflect genealogical relationships. Rather, isolation by distance and local morphological adaptation may explain the observed variation.
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Affiliation(s)
- Lisa Chamberland
- Department of Biology, University of Vermont, Burlington, VT, USA
| | - Fabian C. Salgado-Roa
- Biology Program, Faculty of Natural Sciences and Mathematics, Universidad del Rosario, Bogota, Colombia
| | - Alma Basco
- University of Puerto Rico at Rio Piedras, San Juan, Puerto Rico
| | | | | | - Ingi Agnarsson
- Department of Biology, University of Vermont, Burlington, VT, USA
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA
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Kallal RJ, Dimitrov D, Arnedo MA, Giribet G, Hormiga G. Monophyly, Taxon Sampling, and the Nature of Ranks in the Classification of Orb-Weaving Spiders (Araneae: Araneoidea). Syst Biol 2020; 69:401-411. [PMID: 31165170 DOI: 10.1093/sysbio/syz043] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2019] [Revised: 05/21/2019] [Accepted: 05/24/2019] [Indexed: 12/25/2022] Open
Abstract
We address some of the taxonomic and classification changes proposed by Kuntner et al. (2019) in a comparative study on the evolution of sexual size dimorphism in nephiline spiders. Their proposal to recircumscribe araneids and to rank the subfamily Nephilinae as a family is fundamentally flawed as it renders the family Araneidae paraphyletic. We discuss the importance of monophyly, outgroup selection, and taxon sampling, the subjectivity of ranks, and the implications of the age of origin criterion to assign categorical ranks in biological classifications. We explore the outcome of applying the approach of Kuntner et al. (2019) to the classification of spiders with emphasis on the ecribellate orb-weavers (Araneoidea) using a recently published dated phylogeny. We discuss the implications of including the putative sister group of Nephilinae (the sexually dimorphic genus Paraplectanoides) and the putative sister group of Araneidae (the miniature, monomorphic family Theridiosomatidae). We propose continuation of the phylogenetic classification put forth by Dimitrov et al. (2017), and we formally rank Nephilinae and Phonognathinae as subfamilies of Araneidae. Our classification better reflects the understanding of the phylogenetic placement and evolutionary history of nephilines and phonognathines while maintaining the diagnosability of Nephilinae. It also fulfills the fundamental requirement that taxa must be monophyletic, and thus avoids the paraphyly of Araneidae implied by Kuntner et al. (2019).
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Affiliation(s)
- Robert J Kallal
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA
| | - Dimitar Dimitrov
- Department of Natural History, University Museum of Bergen, University of Bergen, P.O. Box 7800, 5020 Bergen, Norway
| | - Miquel A Arnedo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, & Biodiversity Research Institute (IRBio) Universitat de Barcelona, Avinguda Diagonal 643, Barcelona, Spain.,Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford Street, Cambridge, MA 02138, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA
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14
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Magalhaes ILF, Azevedo GHF, Michalik P, Ramírez MJ. The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic. Biol Rev Camb Philos Soc 2020; 95:184-217. [PMID: 31713947 DOI: 10.1111/brv.12559] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Revised: 09/06/2019] [Accepted: 09/10/2019] [Indexed: 01/24/2023]
Abstract
Studies in evolutionary biology and biogeography increasingly rely on the estimation of dated phylogenetic trees using molecular clocks. In turn, the calibration of such clocks is critically dependent on external evidence (i.e. fossils) anchoring the ages of particular nodes to known absolute ages. In recent years, a plethora of new fossil spiders, especially from the Mesozoic, have been described, while the number of studies presenting dated spider phylogenies based on fossil calibrations increased sharply. We critically evaluate 44 of these studies, which collectively employed 67 unique fossils in 180 calibrations. Approximately 54% of these calibrations are problematic, particularly regarding unsupported assignment of fossils to extant clades (44%) and crown (rather than stem) dating (9%). Most of these cases result from an assumed equivalence between taxonomic placement of fossils and their phylogenetic position. To overcome this limitation, we extensively review the literature on fossil spiders, with a special focus on putative synapomorphies and the phylogenetic placement of fossil species with regard to their importance for calibrating higher taxa (families and above) in the spider tree of life. We provide a curated list including 41 key fossils intended to be a basis for future estimations of dated spider phylogenies. In a second step, we use a revised set of 23 calibrations to estimate a new dated spider tree of life based on transcriptomic data. The revised placement of key fossils and the new calibrated tree are used to resolve a long-standing debate in spider evolution - we tested whether there has been a major turnover in the spider fauna between the Mesozoic and Cenozoic. At least 17 (out of 117) extant families have been recorded from the Cretaceous, implying that at least 41 spider lineages in the family level or above crossed the Cretaeous-Paleogene (K-Pg) boundary. The putative phylogenetic affinities of families known only from the Mesozoic suggest that at least seven Cretaceous families appear to have no close living relatives and might represent extinct lineages. There is no unambiguous fossil evidence of the retrolateral tibial apophysis clade (RTA-clade) in the Mesozoic, although molecular clock analyses estimated the major lineages within this clade to be at least ∼100 million years old. Our review of the fossil record supports a major turnover showing that the spider faunas in the Mesozoic and the Cenozoic are very distinct at high taxonomic levels, with the Mesozoic dominated by Palpimanoidea and Synspermiata, while the Cenozoic is dominated by Araneoidea and RTA-clade spiders.
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Affiliation(s)
- Ivan L F Magalhaes
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
| | - Guilherme H F Azevedo
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
| | - Peter Michalik
- Zoologisches Institut und Museum, Universität Greifswald, Loitzer Straβe 26, Greifswald, D-17489, Germany
| | - Martín J Ramírez
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia" - CONICET, Av. Ángel Gallardo 470, Buenos Aires, C1405DJR, Argentina
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15
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Kuntner M, Coddington JA. Sexual Size Dimorphism: Evolution and Perils of Extreme Phenotypes in Spiders. ANNUAL REVIEW OF ENTOMOLOGY 2020; 65:57-80. [PMID: 31573828 DOI: 10.1146/annurev-ento-011019-025032] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Sexual size dimorphism is one of the most striking animal traits, and among terrestrial animals, it is most extreme in certain spider lineages. The most extreme sexual size dimorphism (eSSD) is female biased. eSSD itself is probably an epiphenomenon of gendered evolutionary drivers whose strengths and directions are diverse. We demonstrate that eSSD spider clades are aberrant by sampling randomly across all spiders to establish overall averages for female (6.9 mm) and male (5.6 mm) size. At least 16 spider eSSD clades exist. We explore why the literature does not converge on an overall explanation for eSSD and propose an equilibrium model featuring clade- and context-specific drivers of gender size variation. eSSD affects other traits such as sexual cannibalism, genital damage, emasculation, and monogyny with terminal investment. Coevolution with these extreme sexual phenotypes is termed eSSD mating syndrome. Finally, as costs of female gigantism increase with size, eSSD may represent an evolutionary dead end.
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Affiliation(s)
- Matjaž Kuntner
- Evolutionary Zoology Laboratory, Department of Organisms and Ecosystems Research, National Institute of Biology, SI-1000 Ljubljana, Slovenia;
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560-0105, USA;
- Evolutionary Zoology Laboratory, Institute of Biology ZRC SAZU, SI-1001 Ljubljana, Slovenia
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560-0105, USA;
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16
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Kallal RJ, Hormiga G. Phylogenetic placement of the stone-nest orb-weaving spider Nemoscolus Simon, 1895 (Araneae : Araneidae) and the description of the first species from Australia. INVERTEBR SYST 2020. [DOI: 10.1071/is20035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The spider genus Nemoscolus Simon, 1895 (Araneidae) has been neglected taxonomically despite the unique retreat that several species construct in their horizontal orb-webs, composed of pebbles and other detritus. The distribution of Nemoscolus is poorly known and the genus includes species from Africa and Europe. Nemoscolus is placed in Simon’s Cycloseae species group along with Cyclosa Menge, 1866, Acusilas Simon, 1895, Arachnura Vinson, 1863, Witica O. Pickard-Cambridge, 1895, among others. Here we describe a new species from Queensland, Australia, N. sandersi, sp. nov., drastically expanding the distribution range of the genus. We use nucleotide sequence data to phylogenetically place Nemoscolus using model-based inference methods within Araneidae and to explore its affinities to Simon’s Cycloseae. The data support propinquity of Nemoscolus with Acusilas and Arachnura but not with Cyclosa. Our analyses suggest that Cycloseae is not a clade, with Cyclosa, Acusilas, Witica and Nemoscolus not sharing a recent common ancestor. This use of an integrated granular retreat represents at least the second independent evolution of such a structure within Araneidae. These results improve our understanding of both phylogeny and retreat evolution in araneid spiders.
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17
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Cabra-García J, Hormiga G. Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case study with the Neotropical orb-weaving spider genus Wagneriana (Araneae: Araneidae). Zool J Linn Soc 2019. [DOI: 10.1093/zoolinnean/zlz088] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Abstract
We present a total evidence phylogenetic analysis of the Neotropical orb-weaving spider genus Wagneriana and discuss the phylogenetic impacts of methodological choices. We analysed 167 phenotypic characters and nine loci scored for 115 Wagneriana and outgroups, including 46 newly sequenced species. We compared total evidence analyses and molecular-only analyses to evaluate the impact of phenotypic evidence, and we performed analyses using the programs POY, TNT, RAxML, GARLI, IQ-TREE and MrBayes to evaluate the effects of multiple sequence alignment and optimality criteria. In all analyses, Wagneriana carimagua and Wagneriana uropygialis were nested in the genera Parawixia and Alpaida, respectively, and the remaining species of Wagneriana fell into three main clades, none of which formed a pair of sister taxa. However, sister-group relationships among the main clades and their internal relationships were strongly influenced by methodological choices. Alignment methods had comparable topological effects to those of optimality criteria in terms of ‘subtree pruning and regrafting’ moves. The inclusion of phenotypic evidence, 2.80–3.05% of the total evidence matrices, increased support irrespective of the optimality criterion used. The monophyly of some groups was recovered only after the addition of morphological characters. A new araneid genus, Popperaneus gen. nov., is erected, and Paraverrucosa is resurrected. Four new synonymies and seven new combinations are proposed.
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Affiliation(s)
- Jimmy Cabra-García
- Departamento de Biología, Universidad del Valle, Cali, AA, Colombia
- Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, São Paulo, SP, Brazil
| | - Gustavo Hormiga
- The George Washington University, Department of Biological Sciences, Washington, DC, USA
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18
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Magalhaes ILF, Neves DM, Santos FR, Vidigal THDA, Brescovit AD, Santos AJ. Phylogeny of Neotropical Sicarius sand spiders suggests frequent transitions from deserts to dry forests despite antique, broad-scale niche conservatism. Mol Phylogenet Evol 2019; 140:106569. [PMID: 31362083 DOI: 10.1016/j.ympev.2019.106569] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2018] [Revised: 07/03/2019] [Accepted: 07/22/2019] [Indexed: 10/26/2022]
Abstract
Phylogenetic niche conservatism (PNC) shapes the distribution of organisms by constraining lineages to particular climatic conditions. Conversely, if areas with similar climates are geographically isolated, diversification may also be limited by dispersal. Neotropical xeric habitats provide an ideal system to test the relative roles of climate and geography on diversification, as they occur in disjunct areas with similar biotas. Sicariinae sand spiders are intimately associated with these xeric environments, particularly seasonally dry tropical forests (SDTFs) and subtropical deserts/scrublands in Africa (Hexophthalma) and the Neotropics (Sicarius). We explore the role of PNC, geography and biome shifts in their evolution and timing of diversification. We estimated a time-calibrated, total-evidence phylogeny of Sicariinae, and used published distribution records to estimate climatic niche and biome occupancy. Topologies were used for estimating ancestral niches and biome shifts. We used variation partitioning methods to test the relative importance of climate and spatially autocorrelated factors in explaining the spatial variation in phylogenetic structure of Sicarius across the Neotropics. Neotropical Sicarius are ancient and split from their African sister-group around 90 (57-131) million years ago. Most speciation events took place in the Miocene. Sicariinae records can be separated in two groups corresponding to temperate/dry and tropical/seasonally dry climates. The ancestral climatic niche of Sicariinae are temperate/dry areas, with 2-3 shifts to tropical/seasonally dry areas in Sicarius. Similarly, ancestral biomes occupied by the group are temperate and dry (deserts, Mediterranean scrub, temperate grasslands), with 2-3 shifts to tropical, seasonally dry forests and grasslands. Most of the variation in phylogenetic structure is explained by long-distance dispersal limitation that is independent of the measured climatic conditions. Sicariinae have an ancient association to arid lands, suggesting that PNC prevented them from colonizing mesic habitats. However, niches are labile at a smaller scale, with several shifts from deserts to SDTFs. This suggests that PNC and long-distance dispersal limitation played major roles in confining lineages to isolated areas of SDTF/desert over evolutionary history, although shifts between xeric biomes occurred whenever geographical opportunities were presented.
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Affiliation(s)
- I L F Magalhaes
- División Aracnología, Museo Argentino de Ciencias Naturales "Bernardino Rivadavia", Buenos Aires, Argentina; Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Minas Gerais, Brazil.
| | - D M Neves
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA; Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Minas Gerais, Brazil
| | - F R Santos
- Departamento de Biologia Geral, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Brazil
| | - T H D A Vidigal
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Minas Gerais, Brazil
| | - A D Brescovit
- Laboratório Especial de Coleções Zoológicas, Instituto Butantan, São Paulo, Brazil
| | - A J Santos
- Departamento de Zoologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Minas Gerais, Brazil
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19
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Kuntner M, Hamilton CA, Cheng RC, Gregorič M, Lupše N, Lokovšek T, Lemmon EM, Lemmon AR, Agnarsson I, Coddington JA, Bond JE. Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism. Syst Biol 2019; 68:555-572. [PMID: 30517732 PMCID: PMC6568015 DOI: 10.1093/sysbio/syy082] [Citation(s) in RCA: 63] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 11/20/2018] [Accepted: 11/26/2018] [Indexed: 11/14/2022] Open
Abstract
Instances of sexual size dimorphism (SSD) provide the context for rigorous tests of biological rules of size evolution, such as Cope's rule (phyletic size increase), Rensch's rule (allometric patterns of male and female size), as well as male and female body size optima. In certain spider groups, such as the golden orbweavers (Nephilidae), extreme female-biased SSD (eSSD, female:male body length $\ge$2) is the norm. Nephilid genera construct webs of exaggerated proportions, which can be aerial, arboricolous, or intermediate (hybrid). First, we established the backbone phylogeny of Nephilidae using 367 anchored hybrid enrichment markers, then combined these data with classical markers for a reference species-level phylogeny. Second, we used the phylogeny to test Cope and Rensch's rules, sex specific size optima, and the coevolution of web size, type, and features with female and male body size and their ratio, SSD. Male, but not female, size increases significantly over time, and refutes Cope's rule. Allometric analyses reject the converse, Rensch's rule. Male and female body sizes are uncorrelated. Female size evolution is random, but males evolve toward an optimum size (3.2-4.9 mm). Overall, female body size correlates positively with absolute web size. However, intermediate sized females build the largest webs (of the hybrid type), giant female Nephila and Trichonephila build smaller webs (of the aerial type), and the smallest females build the smallest webs (of the arboricolous type). We propose taxonomic changes based on the criteria of clade age, monophyly and exclusivity, classification information content, and diagnosability. Spider families, as currently defined, tend to be between 37 million years old and 98 million years old, and Nephilidae is estimated at 133 Ma (97-146), thus deserving family status. We, therefore, resurrect the family Nephilidae Simon 1894 that contains Clitaetra Simon 1889, the Cretaceous GeratonephilaPoinar and Buckley (2012), Herennia Thorell 1877, IndoetraKuntner 2006, new rank, Nephila Leach 1815, Nephilengys L. Koch 1872, Nephilingis Kuntner 2013, Palaeonephila Wunderlich 2004 from Tertiary Baltic amber, and TrichonephilaDahl 1911, new rank. We propose the new clade Orbipurae to contain Araneidae Clerck 1757, Phonognathidae Simon 1894, new rank, and Nephilidae. Nephilid female gigantism is a phylogenetically ancient phenotype (over 100 Ma), as is eSSD, though their magnitudes vary by lineage.
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Affiliation(s)
- Matjaž Kuntner
- Evolutionary Zoology Laboratory, Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, SI-1000 Ljubljana, Slovenia
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Novi trg 2, SI-1001 Ljubljana, Slovenia
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- Centre for Behavioural Ecology and Evolution, College of Life Sciences, Hubei University, 368 Youyi Road, Wuhan, Hubei 430062, China
| | - Chris A Hamilton
- Department of Entomology, Plant Pathology, & Nematology, University of Idaho, 875 Perimeter Dr. MS 2329, Moscow, ID 83844-2329, USA
| | - Ren-Chung Cheng
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Novi trg 2, SI-1001 Ljubljana, Slovenia
- Department of Life Sciences, National Chung Hsing University, No.145 Xingda Rd., South Dist., Taichung City 402, Taiwan
| | - Matjaž Gregorič
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Novi trg 2, SI-1001 Ljubljana, Slovenia
| | - Nik Lupše
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Novi trg 2, SI-1001 Ljubljana, Slovenia
- Division of Animal Evolutionary Biology, Department of Zoology, Faculty of Science, Charles University, Viničná 7, 128 44 Prague, Czech Republic
| | - Tjaša Lokovšek
- Evolutionary Zoology Laboratory, Biological Institute ZRC SAZU, Novi trg 2, SI-1001 Ljubljana, Slovenia
| | - Emily Moriarty Lemmon
- Department of Biological Science, Florida State University, 319 Stadium Dr., Tallahassee, FL 32306-4295, USA
| | - Alan R Lemmon
- Department of Scientific Computing, Florida State University, 400 Dirac Science Library, Tallahassee, FL 32306-4120, USA
| | - Ingi Agnarsson
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
- Department of Biology, University of Vermont, 316 Marsh Life Science Building, 109 Carrigan Drive, Burlington, VT 05405-0086, USA
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution, 10th and Constitution, NW, Washington, DC 20560-0105, USA
| | - Jason E Bond
- Department of Entomology and Nematology, University of California Davis, 1 Shields Drive, Davis, CA 95616, USA
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20
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Scharff N, Coddington JA, Blackledge TA, Agnarsson I, Framenau VW, Szűts T, Hayashi CY, Dimitrov D. Phylogeny of the orb‐weaving spider family Araneidae (Araneae: Araneoidea). Cladistics 2019; 36:1-21. [DOI: 10.1111/cla.12382] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/11/2019] [Indexed: 11/29/2022] Open
Affiliation(s)
- Nikolaj Scharff
- Center for Macroecology, Evolution and Climate Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
- Smithsonian Institution National Museum of Natural History 10th and Constitution NW Washington DC 20560‐0105 USA
| | - Jonathan A. Coddington
- Smithsonian Institution National Museum of Natural History 10th and Constitution NW Washington DC 20560‐0105 USA
| | - Todd A. Blackledge
- Integrated Bioscience Program Department of Biology University of Akron Akron OH USA
| | - Ingi Agnarsson
- Smithsonian Institution National Museum of Natural History 10th and Constitution NW Washington DC 20560‐0105 USA
- Department of Biology University of Vermont 109 Carrigan Drive Burlington VT 05405‐0086 USA
| | - Volker W. Framenau
- Department of Terrestrial Zoology Western Australian Museum Locked Bag 49 Welshpool DC WA 6986 Australia
- School of Animal Biology University of Western Australia Crawley WA 6009 Australia
- Harry Butler Institute Murdoch University 90 South St. Murdoch WA 6150 Australia
| | - Tamás Szűts
- Center for Macroecology, Evolution and Climate Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
- Department of Ecology University of Veterinary Medicine Budapest H1077 Budapest Hungary
| | - Cheryl Y. Hayashi
- Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics American Museum of Natural History New York NY 10024 USA
| | - Dimitar Dimitrov
- Center for Macroecology, Evolution and Climate Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark
- Natural History Museum University of Oslo PO Box 1172, Blindern NO‐0318 Oslo Norway
- Department of Natural History University Museum of Bergen University of Bergen Bergen Norway
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21
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Tong Y, Binford G, Rheims CA, Kuntner M, Liu J, Agnarsson I. Huntsmen of the Caribbean: Multiple tests of the GAARlandia hypothesis. Mol Phylogenet Evol 2019; 130:259-268. [DOI: 10.1016/j.ympev.2018.09.017] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2018] [Revised: 09/28/2018] [Accepted: 09/28/2018] [Indexed: 12/17/2022]
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22
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Knowlton ED, Kamath A. Ants Do Not Traverse the Silk of Adult Female Nephila clavipes (Linnaeus) Webs. NEOTROPICAL ENTOMOLOGY 2018; 47:780-785. [PMID: 30191403 DOI: 10.1007/s13744-018-0631-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2017] [Accepted: 08/23/2018] [Indexed: 06/08/2023]
Abstract
Many organisms use chemicals to deter enemies. Some spiders can modify the composition of their silk to deter predators from climbing onto their webs. The Malaysian golden orb-weaver Nephila antipodiana (Walckenaer) produces silk containing an alkaloid (2-pyrrolidinone) that functions as a defense against ant invasion-ants avoid silk containing this chemical. In the present study, we test the generality of ants' silk avoidance behavior in the field. We introduced three ant species to the orb webs of Nephila clavipes (Linnaeus) in the tropical rainforest of La Selva, Costa Rica. We found that predatory army ants (Eciton burchellii Westwood) as well as non-predatory leaf-cutting ants (Atta cephalotes Linnaeus and Acromyrmex volcanus Wheeler) avoided adult N. clavipes silk, suggesting that an additional species within genus Nephila may possess ant-deterring silk. Our field assay also suggests that silk avoidance behavior is found in multiple ant species.
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Affiliation(s)
- E D Knowlton
- Entomology and Plant Pathology, Graduate Program in Environmental Science, Oklahoma State Univ, Stillwater, OK, USA.
| | - A Kamath
- Dept of Environmental Science, Policy, and Management, Univ of California, Berkeley, CA, USA
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23
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Salgado‐Roa FC, Pardo‐Diaz C, Lasso E, Arias CF, Solferini VN, Salazar C. Gene flow and Andean uplift shape the diversification of Gasteracantha cancriformis (Araneae: Araneidae) in Northern South America. Ecol Evol 2018; 8:7131-7142. [PMID: 30073072 PMCID: PMC6065347 DOI: 10.1002/ece3.4237] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 04/27/2018] [Accepted: 05/03/2018] [Indexed: 01/08/2023] Open
Abstract
The Andean uplift has played a major role in shaping the current Neotropical biodiversity. However, in arthropods other than butterflies, little is known about how this geographic barrier has impacted species historical diversification. Here, we examined the phylogeography of the widespread color polymorphic spider Gasteracantha cancriformis to evaluate the effect of the northern Andean uplift on its divergence and assess whether its diversification occurred in the presence of gene flow. We inferred phylogenetic relationships and divergence times in G. cancriformis using mitochondrial and nuclear data from 105 individuals in northern South America. Genetic diversity, divergence, and population structure were quantified. We also compared multiple demographic scenarios for this species using a model-based approach (phrapl) to determine divergence with or without gene flow. At last, we evaluated the association between genetic variation and color polymorphism. Both nuclear and mitochondrial data supported two well-differentiated clades, which correspond to populations occurring on opposite sides of the Eastern cordillera of the Colombian Andes. The final uplift of this cordillera was identified as the most likely force that shaped the diversification of G. cancriformis in northern South America, resulting in a cis- and trans-Andean phylogeographic structure for the species. We also found shared genetic variation between the cis- and trans-Andean clades, which is better explained by a scenario of historical divergence in the face of gene flow. This has been likely facilitated by the presence of low-elevation passes across the Eastern Colombian cordillera. Our work constitutes the first example in which the Andean uplift coupled with gene flow influenced the evolutionary history of an arachnid lineage.
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Affiliation(s)
- Fabian C. Salgado‐Roa
- Programa de BiologíaFacultad de Ciencias Naturales y MatemáticasUniversidad del RosarioBogotáColombia
- Departamento de Ciencias BiológicasUniversidad de los AndesBogotáColombia
| | - Carolina Pardo‐Diaz
- Programa de BiologíaFacultad de Ciencias Naturales y MatemáticasUniversidad del RosarioBogotáColombia
| | - Eloisa Lasso
- Departamento de Ciencias BiológicasUniversidad de los AndesBogotáColombia
- Smithsonian Tropical Research InstituteAncónPanamá
| | | | - Vera Nisaka Solferini
- Department of Genetics, Evolution and BioagentsInstitute of BiologyUniversity of CampinasCampinasSao PauloBrazil
| | - Camilo Salazar
- Programa de BiologíaFacultad de Ciencias Naturales y MatemáticasUniversidad del RosarioBogotáColombia
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24
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Kallal RJ, Hormiga G. Systematics, phylogeny and biogeography of the Australasian leaf-curling orb-weaving spiders (Araneae: Araneidae: Zygiellinae), with a comparative analysis of retreat evolution. Zool J Linn Soc 2018. [DOI: 10.1093/zoolinnean/zly014] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Robert J Kallal
- The George Washington University, Department of Biological Sciences, Washington, D.C., USA
| | - Gustavo Hormiga
- The George Washington University, Department of Biological Sciences, Washington, D.C., USA
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25
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Kallal RJ, Fernández R, Giribet G, Hormiga G. A phylotranscriptomic backbone of the orb-weaving spider family Araneidae (Arachnida, Araneae) supported by multiple methodological approaches. Mol Phylogenet Evol 2018; 126:129-140. [PMID: 29635025 DOI: 10.1016/j.ympev.2018.04.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Revised: 03/05/2018] [Accepted: 04/06/2018] [Indexed: 01/01/2023]
Abstract
The orb-weaving spider family Araneidae is extremely diverse (>3100 spp.) and its members can be charismatic terrestrial arthropods, many of them recognizable by their iconic orbicular snare web, such as the common garden spiders. Despite considerable effort to better understand their backbone relationships based on multiple sources of data (morphological, behavioral and molecular), pervasive low support remains in recent studies. In addition, no overarching phylogeny of araneids is available to date, hampering further comparative work. In this study, we analyze the transcriptomes of 33 taxa, including 19 araneids - 12 of them new to this study - representing most of the core family lineages, to examine the relationships within the family using genomic-scale datasets resulting from various methodological treatments, namely ortholog selection and gene occupancy as a measure of matrix completion. Six matrices were constructed to assess these effects by varying orthology inference method and gene occupancy threshold. Orthology methods used are the benchmarking tool BUSCO and the tree-based method UPhO; three gene occupancy thresholds (45%, 65%, 85%) were used to assess the effect of missing data. Gene tree and species tree-based methods (including multi-species coalescent and concatenation approaches, as well as maximum likelihood and Bayesian inference) were used totalling 17 analytical treatments. The monophyly of Araneidae and the placement of core araneid lineages were supported, together with some previously unsound backbone divergences; these include high support for Zygiellinae as the earliest diverging subfamily (followed by Nephilinae), the placement of Gasteracanthinae as sister group to Cyclosa and close relatives, and close relationships between the Araneus + Neoscona clade and Cyrtophorinae + Argiopinae clade. Incongruences were relegated to short branches in the clade comprising Cyclosa and its close relatives. We found congruence between most of the completed analyses, with minimal topological effects from occupancy/missing data and orthology assessment. The resulting number of genes by certain combinations of orthology and occupancy thresholds being analyzed had the greatest effect on the resulting trees, with anomalous outcomes recovered from analysis of lower numbers of genes.
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Affiliation(s)
- Robert J Kallal
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA.
| | - Rosa Fernández
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford St., Cambridge, MA 02138, USA; Bioinformatics and Genomics Unit, Center for Genomic Regulation, Carrer del Dr. Aiguader 88, 08003 Barcelona, Spain
| | - Gonzalo Giribet
- Museum of Comparative Zoology, Department of Organismic and Evolutionary Biology, Harvard University, 26 Oxford St., Cambridge, MA 02138, USA
| | - Gustavo Hormiga
- Department of Biological Sciences, The George Washington University, 2029 G St. NW, Washington, DC 20052, USA
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Kallal RJ, Hormiga G. An expanded molecular phylogeny of metaine spiders (Araneae, Tetragnathidae) with description of new taxa from Taiwan and the Philippines. INVERTEBR SYST 2018. [DOI: 10.1071/is17058] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Despite numerous phylogenetic analyses of the orb-weaving spider family Tetragnathidae, several relationships from the subfamily to species level are tenuous or unclear. One such example regards the validity and composition of the tetragnathid subfamily Metainae, which historically has mixed support and limited taxon sampling. Sequences for six genetic markers – 12S, 16S, 18S, 28S, cytochrome c oxidase I and histone H3 – were analysed for 78 taxa, including 10 that were completely new or with increased markers. Analysed in both maximum likelihood and Bayesian frameworks, we find good support for Metainae for the first time. The subfamily includes three previously described genera – Meta, Metellina and Dolichognatha – in addition to one described herein, Zhinu Kallal & Hormiga, gen. nov., from Taiwan. Also within Metainae, we synonymise Metellina with the monotypic Menosira and reaffirm the synonymy of Dolichognatha with Prolochus. Finally, we describe a new species of leucaugine tetragnathid from the Philippines, Orsinome megaloverpa, sp. nov., the second member of Orsinome to be placed in a phylogenetic context.
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Neumann R, Ruppel N, Schneider JM. Fitness implications of sex-specific catch-up growth in Nephila senegalensis, a spider with extreme reversed SSD. PeerJ 2017; 5:e4050. [PMID: 29158981 PMCID: PMC5694211 DOI: 10.7717/peerj.4050] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Accepted: 10/26/2017] [Indexed: 02/02/2023] Open
Abstract
BACKGROUND Animal growth is often constrained by unfavourable conditions and divergences from optimal body size can be detrimental to an individual's fitness, particularly in species with determinate growth and a narrow time-frame for life-time reproduction. Growth restriction in early juvenile stages can later be compensated by means of plastic developmental responses, such as adaptive catch-up growth (the compensation of growth deficits through delayed development). Although sex differences regarding the mode and degree of growth compensation have been coherently predicted from sex-specific fitness payoffs, inconsistent results imply a need for further research. We used the African Nephila senegalensis, representing an extreme case of female-biased sexual size dimorphism (SSD), to study fitness implications of sex-specific growth compensation. We predicted effective catch-up growth in early food-restricted females to result in full compensation of growth deficits and a life-time fecundity (LTF) equivalent to unrestricted females. Based on a stronger trade-off between size-related benefits and costs of a delayed maturation, we expected less effective catch-up growth in males. METHODS We tracked the development of over one thousand spiders in different feeding treatments, e.g., comprising a fixed period of early low feeding conditions followed by unrestricted feeding conditions, permanent unrestricted feeding conditions, or permanent low feeding conditions as a control. In a second experimental section, we assessed female fitness by measuring LTF in a subset of females. In addition, we tested whether compensatory development affected the reproductive lifespan in both sexes and analysed genotype-by-treatment interactions as a potential cause of variation in life-history traits. RESULTS Both sexes delayed maturation to counteract early growth restriction, but only females achieved full compensation of adult body size. Female catch-up growth resulted in equivalent LTF compared to unrestricted females. We found significant interactions between experimental treatments and sex as well as between treatments and family lineage, suggesting that family-specific responses contribute to the unusually large variation of life-history traits in Nephila spiders. Our feeding treatments had no effect on the reproductive lifespan in either sex. DISCUSSION Our findings are in line with predictions of life-history theory and corroborate strong fecundity selection to result in full female growth compensation. Males showed incomplete growth compensation despite a delayed development, indicating relaxed selection on large size and a stronger trade-off between late maturation and size-related benefits. We suggest that moderate catch-up growth in males is still adaptive as a 'bet-hedging' strategy to disperse unavoidable costs between life-history traits affected by early growth restriction (the duration of development and adult size).
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Affiliation(s)
- Rainer Neumann
- Zoologisches Institut, Biozentrum Grindel, Universität Hamburg, Hamburg, Germany
| | - Nicole Ruppel
- Zoologisches Institut, Biozentrum Grindel, Universität Hamburg, Hamburg, Germany
| | - Jutta M. Schneider
- Zoologisches Institut, Biozentrum Grindel, Universität Hamburg, Hamburg, Germany
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The Nephila clavipes genome highlights the diversity of spider silk genes and their complex expression. Nat Genet 2017; 49:895-903. [PMID: 28459453 DOI: 10.1038/ng.3852] [Citation(s) in RCA: 156] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Accepted: 03/29/2017] [Indexed: 12/11/2022]
Abstract
Spider silks are the toughest known biological materials, yet are lightweight and virtually invisible to the human immune system, and they thus have revolutionary potential for medicine and industry. Spider silks are largely composed of spidroins, a unique family of structural proteins. To investigate spidroin genes systematically, we constructed the first genome of an orb-weaving spider: the golden orb-weaver (Nephila clavipes), which builds large webs using an extensive repertoire of silks with diverse physical properties. We cataloged 28 Nephila spidroins, representing all known orb-weaver spidroin types, and identified 394 repeated coding motif variants and higher-order repetitive cassette structures unique to specific spidroins. Characterization of spidroin expression in distinct silk gland types indicates that glands can express multiple spidroin types. We find evidence of an alternatively spliced spidroin, a spidroin expressed only in venom glands, evolutionary mechanisms for spidroin diversification, and non-spidroin genes with expression patterns that suggest roles in silk production.
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Rix MG, Cooper SJ, Meusemann K, Klopfstein S, Harrison SE, Harvey MS, Austin AD. Post-Eocene climate change across continental Australia and the diversification of Australasian spiny trapdoor spiders (Idiopidae: Arbanitinae). Mol Phylogenet Evol 2017; 109:302-320. [DOI: 10.1016/j.ympev.2017.01.008] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Revised: 12/16/2016] [Accepted: 01/16/2017] [Indexed: 01/08/2023]
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Vienneau-Hathaway JM, Brassfield ER, Lane AK, Collin MA, Correa-Garhwal SM, Clarke TH, Schwager EE, Garb JE, Hayashi CY, Ayoub NA. Duplication and concerted evolution of MiSp-encoding genes underlie the material properties of minor ampullate silks of cobweb weaving spiders. BMC Evol Biol 2017; 17:78. [PMID: 28288560 PMCID: PMC5348893 DOI: 10.1186/s12862-017-0927-x] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2016] [Accepted: 02/24/2017] [Indexed: 12/17/2022] Open
Abstract
BACKGROUND Orb-web weaving spiders and their relatives use multiple types of task-specific silks. The majority of spider silk studies have focused on the ultra-tough dragline silk synthesized in major ampullate glands, but other silk types have impressive material properties. For instance, minor ampullate silks of orb-web weaving spiders are as tough as draglines, due to their higher extensibility despite lower strength. Differences in material properties between silk types result from differences in their component proteins, particularly members of the spidroin (spider fibroin) gene family. However, the extent to which variation in material properties within a single silk type can be explained by variation in spidroin sequences is unknown. Here, we compare the minor ampullate spidroins (MiSp) of orb-weavers and cobweb weavers. Orb-web weavers use minor ampullate silk to form the auxiliary spiral of the orb-web while cobweb weavers use it to wrap prey, suggesting that selection pressures on minor ampullate spidroins (MiSp) may differ between the two groups. RESULTS We report complete or nearly complete MiSp sequences from five cobweb weaving spider species and measure material properties of minor ampullate silks in a subset of these species. We also compare MiSp sequences and silk properties of our cobweb weavers to published data for orb-web weavers. We demonstrate that all our cobweb weavers possess multiple MiSp loci and that one locus is more highly expressed in at least two species. We also find that the proportion of β-spiral-forming amino acid motifs in MiSp positively correlates with minor ampullate silk extensibility across orb-web and cobweb weavers. CONCLUSIONS MiSp sequences vary dramatically within and among spider species, and have likely been subject to multiple rounds of gene duplication and concerted evolution, which have contributed to the diverse material properties of minor ampullate silks. Our sequences also provide templates for recombinant silk proteins with tailored properties.
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Affiliation(s)
| | | | - Amanda Kelly Lane
- Department of Biology, Washington and Lee University, Lexington, VA USA
| | | | | | - Thomas H. Clarke
- Department of Biology, Washington and Lee University, Lexington, VA USA
- Department of Biology, University of California, Riverside, CA USA
| | - Evelyn E. Schwager
- Department of Biological Sciences, University of Massachusetts, Lowell, MA USA
| | - Jessica E. Garb
- Department of Biological Sciences, University of Massachusetts, Lowell, MA USA
| | | | - Nadia A. Ayoub
- Department of Biology, Washington and Lee University, Lexington, VA USA
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31
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Wheeler WC, Coddington JA, Crowley LM, Dimitrov D, Goloboff PA, Griswold CE, Hormiga G, Prendini L, Ramírez MJ, Sierwald P, Almeida‐Silva L, Alvarez‐Padilla F, Arnedo MA, Benavides Silva LR, Benjamin SP, Bond JE, Grismado CJ, Hasan E, Hedin M, Izquierdo MA, Labarque FM, Ledford J, Lopardo L, Maddison WP, Miller JA, Piacentini LN, Platnick NI, Polotow D, Silva‐Dávila D, Scharff N, Szűts T, Ubick D, Vink CJ, Wood HM, Zhang J. The spider tree of life: phylogeny of Araneae based on target‐gene analyses from an extensive taxon sampling. Cladistics 2016; 33:574-616. [DOI: 10.1111/cla.12182] [Citation(s) in RCA: 246] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/24/2016] [Indexed: 12/13/2022] Open
Affiliation(s)
- Ward C. Wheeler
- Division of Invertebrate Zoology American Museum of Natural History Central Park West at 79th St. New York NY 10024 USA
| | - Jonathan A. Coddington
- Smithsonian Institution National Museum of Natural History 10th and Constitution NW Washington DC 20560‐0105 USA
| | - Louise M. Crowley
- Division of Invertebrate Zoology American Museum of Natural History Central Park West at 79th St. New York NY 10024 USA
| | - Dimitar Dimitrov
- Natural History Museum University of Oslo Oslo Norway
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
| | - Pablo A. Goloboff
- Unidad Ejecutora Lillo FML—CONICET Miguel Lillo 251 4000 SM. de Tucumán Argentina
| | - Charles E. Griswold
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
| | - Gustavo Hormiga
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
| | - Lorenzo Prendini
- Division of Invertebrate Zoology American Museum of Natural History Central Park West at 79th St. New York NY 10024 USA
| | - Martín J. Ramírez
- Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET Av. Angel Gallardo 470 C1405DJR Buenos Aires Argentina
| | - Petra Sierwald
- The Field Museum of Natural History 1400 S Lake Shore Drive Chicago IL 60605 USA
| | - Lina Almeida‐Silva
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Laboratório Especial de Coleções Zoológicas Instituto Butantan Av. Vital Brasil, 1500 05503‐900 São Paulo São Paulo Brazil
| | - Fernando Alvarez‐Padilla
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Departamento de Biología Comparada Facultad de Ciencias Laboratório de Acarología Universidad Nacional Autónoma de México Distrito Federal Del. Coyoacán CP 04510 México
| | - Miquel A. Arnedo
- Departamento de Biología Animal Facultat de Biología Institut de Recerca de la Bioversitat Universitat de Barcelona Av. Diagonal 643 08028 Barcelona Spain
| | - Ligia R. Benavides Silva
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
| | - Suresh P. Benjamin
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
- National Institute of Fundamental Studies Hantana Road Kandy 20000 Sri Lanka
| | - Jason E. Bond
- Department of Biological Sciences Auburn University Museum of Natural History Auburn University Rouse Life Sciences Building Auburn AL 36849 USA
| | - Cristian J. Grismado
- Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET Av. Angel Gallardo 470 C1405DJR Buenos Aires Argentina
| | - Emile Hasan
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
| | - Marshal Hedin
- Department of Biology San Diego State University 5500 Campanile Drive San Diego CA 92182 USA
| | - Matías A. Izquierdo
- Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET Av. Angel Gallardo 470 C1405DJR Buenos Aires Argentina
| | - Facundo M. Labarque
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET Av. Angel Gallardo 470 C1405DJR Buenos Aires Argentina
- Laboratório Especial de Coleções Zoológicas Instituto Butantan Av. Vital Brasil, 1500 05503‐900 São Paulo São Paulo Brazil
| | - Joel Ledford
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Department of Plant Biology University of California Davis CA 95616 USA
| | - Lara Lopardo
- Department of Biological Sciences The George Washington University 2029 G St. NW Washington DC 20052 USA
| | - Wayne P. Maddison
- Department of Zoology University of British Columbia 6270 University Boulevard Vancouver BC V6T 1Z4 Canada
| | - Jeremy A. Miller
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Department of Terrestrial Zoology Netherlands Centre for Biodiversity Naturalis Postbus 9517 2300 RA Leiden The Netherlands
| | - Luis N. Piacentini
- Museo Argentino de Ciencias Naturales ‘Bernardino Rivadavia’—CONICET Av. Angel Gallardo 470 C1405DJR Buenos Aires Argentina
| | - Norman I. Platnick
- Division of Invertebrate Zoology American Museum of Natural History Central Park West at 79th St. New York NY 10024 USA
| | - Daniele Polotow
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Laboratório Especial de Coleções Zoológicas Instituto Butantan Av. Vital Brasil, 1500 05503‐900 São Paulo São Paulo Brazil
| | - Diana Silva‐Dávila
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Departamento de Entomología Museo de Historia Natural Universidad Nacional Mayor de San Marcos Av. Arenales 1256 Apartado Postal 140434 Lima 14 Peru
| | - Nikolaj Scharff
- Biodiversity Section Center for Macroecology, Evolution and Climate Natural History Museum of Denmark University of Copenhagen Universitetsparken 15 Copenhagen Denmark
| | - Tamás Szűts
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
- Department of Zoology University of West Hungary H9700 Szombathely Hungary
| | - Darrell Ubick
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
| | - Cor J. Vink
- Department of Biology San Diego State University 5500 Campanile Drive San Diego CA 92182 USA
- Canterbury Museum Rolleston Avenue Christchurch 8013 New Zealand
| | - Hannah M. Wood
- Smithsonian Institution National Museum of Natural History 10th and Constitution NW Washington DC 20560‐0105 USA
- Department of Entomology California Academy of Sciences 55 Music Concourse Drive, Golden State Park San Francisco CA 94118 USA
| | - Junxia Zhang
- Department of Zoology University of British Columbia 6270 University Boulevard Vancouver BC V6T 1Z4 Canada
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Potential costs of heterospecific sexual interactions in golden orbweb spiders (Nephila spp.). Sci Rep 2016; 6:36908. [PMID: 27845369 PMCID: PMC5109271 DOI: 10.1038/srep36908] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2016] [Accepted: 10/21/2016] [Indexed: 11/23/2022] Open
Abstract
Though not uncommon in other animals, heterospecific mating is rarely reported in arachnids. We investigated sexual interactions among four closely related and syntopical African golden orbweb spiders, Nephila inaurata, N. fenestrata, N. komaci, and N. senegalensis. In two South African localities, female webs were often inhabited by heterospecific males that sometimes outnumbered conspecifics. Species association of males with females was random in nature. In subsequent laboratory choice experiments, N. inaurata males chose heterospecific females in 30% of trials. We also observed natural mating interactions between N. inaurata males and N. komaci females, and between N. komaci males and N. inaurata females in laboratory experiments. While heterospecific mating in the laboratory never produced offspring, conspecific mating did. We discuss potential ecological and evolutionary consequences of heterospecific mating interactions in Nephila that may be particularly costly to the rarer species.
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Kuntner M, Cheng RC, Kralj-Fišer S, Liao CP, Schneider JM, Elgar MA. The evolution of genital complexity and mating rates in sexually size dimorphic spiders. BMC Evol Biol 2016; 16:242. [PMID: 27829358 PMCID: PMC5103378 DOI: 10.1186/s12862-016-0821-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Accepted: 10/28/2016] [Indexed: 11/10/2022] Open
Abstract
Background Genital diversity may arise through sexual conflict over polyandry, where male genital features function to manipulate female mating frequency against her interest. Correlated genital evolution across animal groups is consistent with this view, but a link between genital complexity and mating rates remains to be established. In sexually size dimorphic spiders, golden orbweaving spiders (Nephilidae) males mutilate their genitals to form genital plugs, but these plugs do not always prevent female polyandry. In a comparative framework, we test whether male and female genital complexity coevolve, and how these morphologies, as well as sexual cannibalism, relate to the evolution of mating systems. Results Using a combination of comparative tests, we show that male genital complexity negatively correlates with female mating rates, and that levels of sexual cannibalism negatively correlate with male mating rates. We also confirm a positive correlation between male and female genital complexity. The macroevolutionary trajectory is consistent with a repeated evolution from polyandry to monandry coinciding with the evolution towards more complex male genitals. Conclusions These results are consistent with the predictions from sexual conflict theory, although sexual conflict may not be the only mechanism responsible for the evolution of genital complexity and mating systems. Nevertheless, our comparative evidence suggests that in golden orbweavers, male genital complexity limits female mating rates, and sexual cannibalism by females coincides with monogyny. Electronic supplementary material The online version of this article (doi:10.1186/s12862-016-0821-y) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Matjaž Kuntner
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia. .,National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.
| | - Ren-Chung Cheng
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
| | - Simona Kralj-Fišer
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
| | - Chen-Pan Liao
- Department of Life Science, Tunghai University, Taichung, Taiwan
| | - Jutta M Schneider
- Zoological Institute, Biozentrum Grindel, University of Hamburg, Hamburg, Germany
| | - Mark A Elgar
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
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Fuzita FJ, Pinkse MWH, Patane JSL, Verhaert PDEM, Lopes AR. High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders. BMC Genomics 2016; 17:716. [PMID: 27604083 PMCID: PMC5013568 DOI: 10.1186/s12864-016-3048-9] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2015] [Accepted: 08/27/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Spiders are known for their predatory efficiency and for their high capacity of digesting relatively large prey. They do this by combining both extracorporeal and intracellular digestion. Whereas many high throughput ("-omics") techniques focus on biomolecules in spider venom, so far this approach has not yet been applied to investigate the protein composition of spider midgut diverticula (MD) and digestive fluid (DF). RESULTS We here report on our investigations of both MD and DF of the spider Nephilingis (Nephilengys) cruentata through the use of next generation sequencing and shotgun proteomics. This shows that the DF is composed of a variety of hydrolases including peptidases, carbohydrases, lipases and nuclease, as well as of toxins and regulatory proteins. We detect 25 astacins in the DF. Phylogenetic analysis of the corresponding transcript(s) in Arachnida suggests that astacins have acquired an unprecedented role for extracorporeal digestion in Araneae, with different orthologs used by each family. The results of a comparative study of spiders in distinct physiological conditions allow us to propose some digestion mechanisms in this interesting animal taxon. CONCLUSION All the high throughput data allowed the demonstration that DF is a secretion originating from the MD. We identified enzymes involved in the extracellular and intracellular phases of digestion. Besides that, data analyses show a large gene duplication event in Araneae digestive process evolution, mainly of astacin genes. We were also able to identify proteins expressed and translated in the digestive system, which until now had been exclusively associated to venom glands.
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Affiliation(s)
- Felipe J Fuzita
- Laboratory of Biochemistry and Biophysics, Instituto Butantan, São Paulo, 05503-000, Brazil.,Biotechnology Program, University of São Paulo, São Paulo, Brazil
| | - Martijn W H Pinkse
- Laboratory of Analytical Biotechnology and Innovative Peptide Biology, Delft University of Technology, Delft, The Netherlands
| | - José S L Patane
- Department of Biochemistry, Institute of Chemistry, University of São Paulo, São Paulo, Brazil
| | - Peter D E M Verhaert
- Laboratory of Analytical Biotechnology and Innovative Peptide Biology, Delft University of Technology, Delft, The Netherlands.,Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Adriana R Lopes
- Laboratory of Biochemistry and Biophysics, Instituto Butantan, São Paulo, 05503-000, Brazil.
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Lupše N, Cheng RC, Kuntner M. Coevolution of female and male genital components to avoid genital size mismatches in sexually dimorphic spiders. BMC Evol Biol 2016; 16:161. [PMID: 27535025 PMCID: PMC4989301 DOI: 10.1186/s12862-016-0734-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2016] [Accepted: 08/05/2016] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND In most animal groups, it is unclear how body size variation relates to genital size differences between the sexes. While most morphological features tend to scale with total somatic size, this does not necessarily hold for genitalia because divergent evolution in somatic size between the sexes would cause genital size mismatches. Theory predicts that the interplay of female-biased sexual size dimorphism (SSD) and sexual genital size dimorphism (SGD) should adhere to the 'positive genital divergence', the 'constant genital divergence', or the 'negative genital divergence' model, but these models remain largely untested. We test their validity in the spider family Nephilidae known for the highest degrees of SSD among terrestrial animals. RESULTS Through comparative analyses of sex-specific somatic and genital sizes, we first demonstrate that 99 of the 351 pairs of traits are phylogenetically correlated. Through factor analyses we then group these traits for MCMCglmm analyses that test broader correlation patterns, and these reveal significant correlations in 10 out of the 36 pairwise comparisons. Both types of analyses agree that female somatic and internal genital sizes evolve independently. While sizes of non-intromittent male genital parts coevolve with male body size, the size of the intromittent male genital parts is independent of the male somatic size. Instead, male intromittent genital size coevolves with female (external and, in part, internal) genital size. All analyses also agree that SGD and SSD evolve independently. CONCLUSIONS Internal dimensions of female genitalia evolve independently of female body size in nephilid spiders, and similarly, male intromittent genital size evolves independently of the male body size. The size of the male intromittent organ (the embolus) and the sizes of female internal and external genital components thus seem to respond to selection against genital size mismatches. In accord with these interpretations, we reject the validity of the existing theoretical models of genital and somatic size dimorphism in spiders.
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Affiliation(s)
- Nik Lupše
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
| | - Ren-Chung Cheng
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
| | - Matjaž Kuntner
- Institute of Biology, Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia. .,Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC, 20013-7012, USA.
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Preik OA, Schneider JM, Uhl G, Michalik P. Transition from monogyny to polygyny inNephila senegalensis(Araneae: Nephilidae) is not accompanied by increased investment in sperm. Biol J Linn Soc Lond 2016. [DOI: 10.1111/bij.12863] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Onno A. Preik
- University of Hamburg; Biozentrum Grindel; Zoological Institute; Martin-Luther-King-Platz 3 D-20146 Hamburg Germany
| | - Jutta M. Schneider
- University of Hamburg; Biozentrum Grindel; Zoological Institute; Martin-Luther-King-Platz 3 D-20146 Hamburg Germany
| | - Gabriele Uhl
- University of Greifswald; Zoological Institute and Museum; General and Systematic Zoology; J.S.-Bach Straße 11-12 D-17489 Greifswald Germany
| | - Peter Michalik
- University of Greifswald; Zoological Institute and Museum; General and Systematic Zoology; J.S.-Bach Straße 11-12 D-17489 Greifswald Germany
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Dimitrov D, Benavides LR, Arnedo MA, Giribet G, Griswold CE, Scharff N, Hormiga G. Rounding up the usual suspects: a standard target‐gene approach for resolving the interfamilial phylogenetic relationships of ecribellate orb‐weaving spiders with a new family‐rank classification (Araneae, Araneoidea). Cladistics 2016; 33:221-250. [DOI: 10.1111/cla.12165] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/19/2016] [Indexed: 12/29/2022] Open
Affiliation(s)
- Dimitar Dimitrov
- Natural History Museum University of Oslo P.O. Box 1172 Blindern NO‐0318 Oslo Norway
| | - Ligia R. Benavides
- Department of Biological Sciences The George Washington University Washington DC 20052 USA
- Museum of Comparative Zoology & Department of Organismic and Evolutionary Biology Harvard University 26 Oxford Street Cambridge MA 02138 USA
| | - Miquel A. Arnedo
- Museum of Comparative Zoology & Department of Organismic and Evolutionary Biology Harvard University 26 Oxford Street Cambridge MA 02138 USA
- Departament de Biologia Animal and Institut de Recerca de la Biodiversitat (IRBio) Universitat de Barcelona Avinguda Diagonal 643 Barcelona 08071 Catalonia Spain
| | - Gonzalo Giribet
- Museum of Comparative Zoology & Department of Organismic and Evolutionary Biology Harvard University 26 Oxford Street Cambridge MA 02138 USA
| | - Charles E. Griswold
- Arachnology California Academy of Sciences 55 Music Concourse Drive, Golden Gate Park San Francisco CA 94118 USA
| | - Nikolaj Scharff
- Center for Macroecology, Evolution and Climate Natural History Museum of Denmark University of Copenhagen Universitetsparken 15 Copenhagen DK‐2100 Denmark
| | - Gustavo Hormiga
- Department of Biological Sciences The George Washington University Washington DC 20052 USA
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Evolutionary Pathways Maintaining Extreme Female-Biased Sexual Size Dimorphism: Convergent Spider Cases Defy Common Patterns. Evol Biol 2016. [DOI: 10.1007/978-3-319-41324-2_8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Esposito LA, Bloom T, Caicedo-Quiroga L, Alicea-Serrano AM, Sánchez-Ruíz JA, May-Collado LJ, Binford GJ, Agnarsson I. Islands within islands: Diversification of tailless whip spiders (Amblypygi, Phrynus) in Caribbean caves. Mol Phylogenet Evol 2015. [DOI: 10.1016/j.ympev.2015.07.005] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Dziki A, Binford GJ, Coddington JA, Agnarsson I. Spintharus flavidus in the Caribbean-a 30 million year biogeographical history and radiation of a 'widespread species'. PeerJ 2015; 3:e1422. [PMID: 26618089 PMCID: PMC4655100 DOI: 10.7717/peerj.1422] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 11/02/2015] [Indexed: 01/30/2023] Open
Abstract
The Caribbean island biota is characterized by high levels of endemism, the result of an interplay between colonization opportunities on islands and effective oceanic barriers among them. A relatively small percentage of the biota is represented by ‘widespread species,’ presumably taxa for which oceanic barriers are ineffective. Few studies have explored in detail the genetic structure of widespread Caribbean taxa. The cobweb spider Spintharus flavidus Hentz, 1850 (Theridiidae) is one of two described Spintharus species and is unique in being widely distributed from northern N. America to Brazil and throughout the Caribbean. As a taxonomic hypothesis, Spintharus “flavidus” predicts maintenance of gene flow among Caribbean islands, a prediction that seems contradicted by known S. flavidus biology, which suggests limited dispersal ability. As part of an extensive survey of Caribbean arachnids (project CarBio), we conducted the first molecular phylogenetic analysis of S. flavidus with the primary goal of testing the ‘widespread species’ hypothesis. Our results, while limited to three molecular loci, reject the hypothesis of a single widespread species. Instead this lineage seems to represent a radiation with at least 16 species in the Caribbean region. Nearly all are short range endemics with several distinct mainland groups and others are single island endemics. While limited taxon sampling, with a single specimen from S. America, constrains what we can infer about the biogeographical history of the lineage, clear patterns still emerge. Consistent with limited overwater dispersal, we find evidence for a single colonization of the Caribbean about 30 million years ago, coinciding with the timing of the GAARLandia landbridge hypothesis. In sum, S. “flavidus” is not a single species capable of frequent overwater dispersal, but rather a 30 my old radiation of single island endemics that provides preliminary support for a complex and contested geological hypothesis.
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Affiliation(s)
- Austin Dziki
- Department of Biology, University of Vermont , Burlington, VT , USA
| | - Greta J Binford
- Department of Biology, Lewis and Clark College , Portland, OR , USA
| | - Jonathan A Coddington
- Department of Entomology, National Museum of Natural History, Smithsonian Institution , Washington, DC , USA
| | - Ingi Agnarsson
- Department of Biology, University of Vermont , Burlington, VT , USA ; Department of Entomology, National Museum of Natural History, Smithsonian Institution , Washington, DC , USA
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A revised and dated phylogeny of cobweb spiders (Araneae, Araneoidea, Theridiidae): A predatory Cretaceous lineage diversifying in the era of the ants (Hymenoptera, Formicidae). Mol Phylogenet Evol 2015; 94:658-675. [PMID: 26454029 DOI: 10.1016/j.ympev.2015.09.023] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2015] [Revised: 08/19/2015] [Accepted: 09/29/2015] [Indexed: 01/06/2023]
Abstract
Cobweb spiders (Theridiidae) are highly diverse from the perspective of species richness, morphological diversity, variety of web architecture, and behavioral repertoires. The family includes over 50% of social spiders, a behavioral rarity among the order, and members of the family are furthermore the subject of research on venom, silk biomechanics, kleptoparasitism and web building, among other traits. Theridiidae is one of the most abundant groups of spiders, and thus key insect predators in many different ecosystems and is among relatively few spider families that show high degree of myrmecophagy. Modern comparative studies on all these fronts are best buttressed on a phylogenetic foundation. Our goal here is to offer a revised, dated, phylogenetic hypothesis for the family by summarizing previously published data from multiple molecular and morphological studies through data-mining, and adding novel data from several genera. We also test the hypothesis that the origin and diversification of cobweb spiders coincides with that of ants on which many species specialize as prey. The new phylogeny is largely congruent with prior studies and current taxonomy and should provide a useful tool for theridiid classification and for comparative analyses. Nevertheless, we also highlight the limitations of currently available data-the state of the art in Theridiidae phylogenetics-offering weak support for most of the deeper nodes in the phylogeny. Thus the need is clear for modern phylogenomic approaches to obtain a more solid understanding, especially of relationships among subfamilies. We recover the monophyly of currently recognized theridiid subfamilies with the exception of some enigmatic 'pholcommatines' (Styposis, Phoroncidia) and putative 'hadrotarsines' (Audifia, Tekellina) whose placement is uncertain in our analyses. Theridiidae dates back some 100 mya to the Cretaceous, a period of diversification in flowering plants and many groups of insects, including ants. The origin of cobweb spiders, and hence the cobweb-a speciallized trap for pedestrian prey-coincides with a major diversification shift in ants. The family becomes abundant in fossil record 50-40 mya as ants also diversify and reach dominance and contemporary patterns of abundances of theridiids and ants show the same trends, with increasing relative abundance towards the equator and at lower altitudes. We find that among orbiculariae, lineages that specialize on ant prey are non-randomly clustered within Theridiidae. Given these findings we hypothesize that the origin of the gumfoot web was a stepping stone that facilitated the capture of ants and resulted in specialized myrmecophagy in a number of 'basal' theridiids. We also document a subsequent loss in myrmecophagy, and associated increase in speciation rates, as 'recent' theridiid groups evolve diverse web forms and many return to the capture of aerial prey.
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Xu X, Liu F, Chen J, Li D, Kuntner M. Integrative taxonomy of the primitively segmented spider genusGanthela(Araneae: Mesothelae: Liphistiidae): DNA barcoding gap agrees with morphology. Zool J Linn Soc 2015. [DOI: 10.1111/zoj.12280] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Xin Xu
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan China
| | - Fengxiang Liu
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan China
| | - Jian Chen
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan China
| | - Daiqin Li
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan China
- Department of Biological Sciences; National University of Singapore; 14 Science Drive 4 117543 Singapore
| | - Matjaž Kuntner
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan China
- Evolutionary Zoology Laboratory; Biological Institute ZRC SAZU; Novi trg 2 P. O. Box 306 SI-1001 Ljubljana Slovenia
- Department of Entomology; National Museum of Natural History; Smithsonian Institution; Washington, DC USA
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Gregorič M, Agnarsson I, Blackledge TA, Kuntner M. Phylogenetic position and composition of Zygiellinae andCaerostris, with new insight into orb-web evolution and gigantism. Zool J Linn Soc 2015. [DOI: 10.1111/zoj.12281] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Matjaž Gregorič
- Institute of Biology; Scientific Research Centre; Slovenian Academy of Sciences and Arts; Novi trg 2 P. O. Box 306 SI-1001 Ljubljana Slovenia
- Integrated Bioscience Program; Department of Biology; University of Akron; Akron OH 44325-3908 USA
| | - Ingi Agnarsson
- Department of Biology; University of Vermont; Burlington VT USA
- Department of Entomology; National Museum of Natural History; Smithsonian Institution; Washington, DC USA
| | - Todd A. Blackledge
- Integrated Bioscience Program; Department of Biology; University of Akron; Akron OH 44325-3908 USA
| | - Matjaž Kuntner
- Institute of Biology; Scientific Research Centre; Slovenian Academy of Sciences and Arts; Novi trg 2 P. O. Box 306 SI-1001 Ljubljana Slovenia
- Department of Entomology; National Museum of Natural History; Smithsonian Institution; Washington, DC USA
- Centre for Behavioural Ecology and Evolution; College of Life Sciences; Hubei University; Wuhan Hubei China
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Neumann R, Schneider JM. Differential investment and size-related mating strategies facilitate extreme size variation in contesting male spiders. Anim Behav 2015. [DOI: 10.1016/j.anbehav.2014.12.027] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Hoebeke ER, Huffmaster W, Freeman BJ. Nephila clavata L Koch, the Joro Spider of East Asia, newly recorded from North America (Araneae: Nephilidae). PeerJ 2015; 3:e763. [PMID: 25699210 PMCID: PMC4327315 DOI: 10.7717/peerj.763] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2014] [Accepted: 01/22/2015] [Indexed: 11/20/2022] Open
Abstract
Nephila clavata L Koch, known as the Joro spider and native to East Asia (Japan, China, Korea, and Taiwan), is newly reported from North America. Specimens from several locations in northeast Georgia were collected from around residential properties in Barrow, Jackson, and Madison counties in late October and early November 2014. These are the first confirmed records of the species in the New World. Our collections, along with confirmed images provided by private citizens, suggest that the Joro spider is established in northeast Georgia. Genomic sequence data for the COI gene obtained from two specimens conforms to published sequences for N. clavata, providing additional confirmation of species identity. Known collection records are listed and mapped using geocoding. Our observations are summarized along with published background information on biology in Asia and we hypothesize on the invasion history and mode of introduction into North America. Recognition features are given and photographic images of the male and female are provided to aid in their differentiation from the one native species of the genus (Nephila clavipes) in North America.
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Affiliation(s)
- E. Richard Hoebeke
- Georgia Museum of Natural History and Department of Entomology, University of Georgia, Athens, GA, USA
| | | | - Byron J. Freeman
- Georgia Museum of Natural History and Eugene P. Odum School of Ecology, University of Georgia, Athens, GA, USA
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Lee VMJ, Kuntner M, Li D. Ballooning behavior in the golden orbweb spider Nephila pilipes (Araneae: Nephilidae). Front Ecol Evol 2015. [DOI: 10.3389/fevo.2015.00002] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Ruch J, Riehl T, May-Collado LJ, Agnarsson I. Multiple origins of subsociality in crab spiders (Thomisidae). Mol Phylogenet Evol 2015; 82 Pt A:330-40. [DOI: 10.1016/j.ympev.2014.10.015] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 10/17/2014] [Accepted: 10/20/2014] [Indexed: 11/25/2022]
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Vidergar N, Toplak N, Kuntner M. Streamlining DNA barcoding protocols: automated DNA extraction and a new cox1 primer in arachnid systematics. PLoS One 2014; 9:e113030. [PMID: 25415202 PMCID: PMC4240537 DOI: 10.1371/journal.pone.0113030] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2014] [Accepted: 10/17/2014] [Indexed: 12/20/2022] Open
Abstract
Background DNA barcoding is a popular tool in taxonomic and phylogenetic studies, but for most animal lineages protocols for obtaining the barcoding sequences—mitochondrial cytochrome C oxidase subunit I (cox1 AKA CO1)—are not standardized. Our aim was to explore an optimal strategy for arachnids, focusing on the species-richest lineage, spiders by (1) improving an automated DNA extraction protocol, (2) testing the performance of commonly used primer combinations, and (3) developing a new cox1 primer suitable for more efficient alignment and phylogenetic analyses. Methodology We used exemplars of 15 species from all major spider clades, processed a range of spider tissues of varying size and quality, optimized genomic DNA extraction using the MagMAX Express magnetic particle processor—an automated high throughput DNA extraction system—and tested cox1 amplification protocols emphasizing the standard barcoding region using ten routinely employed primer pairs. Results The best results were obtained with the commonly used Folmer primers (LCO1490/HCO2198) that capture the standard barcode region, and with the C1-J-2183/C1-N-2776 primer pair that amplifies its extension. However, C1-J-2183 is designed too close to HCO2198 for well-interpreted, continuous sequence data, and in practice the resulting sequences from the two primer pairs rarely overlap. We therefore designed a new forward primer C1-J-2123 60 base pairs upstream of the C1-J-2183 binding site. The success rate of this new primer (93%) matched that of C1-J-2183. Conclusions The use of C1-J-2123 allows full, indel-free overlap of sequences obtained with the standard Folmer primers and with C1-J-2123 primer pair. Our preliminary tests suggest that in addition to spiders, C1-J-2123 will also perform in other arachnids and several other invertebrates. We provide optimal PCR protocols for these primer sets, and recommend using them for systematic efforts beyond DNA barcoding.
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Affiliation(s)
- Nina Vidergar
- Institute of Biology, Scientific Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
- Molecular Virology lab, International Centre for Genetic Engineering and Biotechnology–ICGEB, Trieste, Italy
| | | | - Matjaž Kuntner
- Institute of Biology, Scientific Research Centre of the Slovenian Academy of Sciences and Arts, Ljubljana, Slovenia
- Centre for Behavioural Ecology & Evolution, College of Life Sciences, Hubei University, Wuhan, China
- National Museum of Natural History, Smithsonian Institution, Washington, DC, United States of America
- * E-mail:
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