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Macate IE, Bessa-Silva A, Caires RA, Vallinoto M, Giarrizzo T, Angulo A, Ruiz-Campos G, Sampaio I, Guimarães-Costa A. Phylogenetic relationships of sleeper gobies (Eleotridae: Gobiiformes: Gobioidei), with comments on the position of the miniature genus Microphilypnus. Sci Rep 2022; 12:22162. [PMID: 36550282 PMCID: PMC9780216 DOI: 10.1038/s41598-022-26555-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 12/16/2022] [Indexed: 12/24/2022] Open
Abstract
Microphilypnus and Leptophilypnion are miniaturized genera within the family Eleotridae. The evolutionary relationships among these taxa are still poorly understood, and molecular analyses are restricted to mitochondrial genes, which have not been conclusive. We compiled both mitochondrial and nuclear genes to study the phylogenetic position of Microphilypnus and the evolutionary history and relationships of eleotrids. We propose that Microphilypnus and Leptophilypnus (a non-miniature genus) are not sister groups as suggested by previous studies, but rather separate lineages that arose in the early Eocene, with Leptophilypnus recovered as a sister group to the other analyzed eleotrids. In fact, Microphilypnus is currently associated with the Neotropical clade Guavina/Dormitator/Gobiomorus. We also identified a well-supported clade that indicated Gobiomorus and Hemieleotris as paraphyletic groups, besides a close relationship among Calumia godeffroyi, Bunaka gyrinoides, Eleotris and Erotelis species. This is the first comprehensive report about the evolutionary relationships in members of the family Eleotridae, including multiloci and multispecies approaches. Therefore, we provided new insights about the phylogenetic position of some taxa absent in previous studies, such as the miniature genus Microphilypnus and a recently described species of Eleotris from South America.
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Affiliation(s)
- Isadola Eusébio Macate
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
| | - Adam Bessa-Silva
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil ,grid.5808.50000 0001 1503 7226CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - Rodrigo Antunes Caires
- grid.11899.380000 0004 1937 0722Laboratório de Diversidade, Ecologia e Distribuição de Peixes, Instituto Oceanografico da Universidade de São Paulo, Praça do Oceanografico, Butantã, 05508-120, São Paulo, Brazil
| | - Marcelo Vallinoto
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil ,grid.5808.50000 0001 1503 7226CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus Agrário de Vairão, 4485-661 Vairão, Portugal
| | - Tommaso Giarrizzo
- grid.271300.70000 0001 2171 5249Laboratório de Biologia Pesqueira - Manejo de Recursos Aquáticos, Universidade Federal do Pará, Campus do Guamá, Av. Perimetral. 2651, Belém, Pará Brazil
| | - Arturo Angulo
- grid.412889.e0000 0004 1937 0706Museo de Zoología, Escuela de Biología, Universidad de Costa Rica, San Pedro de Montes de Oca, San José, Costa Rica ,grid.412889.e0000 0004 1937 0706Centro de Investigación en Biodiversidad y Ecología Tropical, Museo de Zoología, Universidad de Costa Rica, San Pedro de Montes de Oca, San José, 11501–2060 Costa Rica
| | - Gorgonio Ruiz-Campos
- grid.412852.80000 0001 2192 0509Facultad de Ciencias, Universidad Autónoma de Baja California, 22860 Ensenada, Baja California Mexico
| | - Iracilda Sampaio
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
| | - Aurycéia Guimarães-Costa
- grid.271300.70000 0001 2171 5249Laboratório de Evolução, Instituto de Estudos Costeiros, Universidade Federal do Pará, campus de Bragança, Alameda Leandro Ribeiro, 68600-000 Bragança, Pará Brazil
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Fish diversity of the largest deltaic formation in the Americas - a description of the fish fauna of the Parnaíba Delta using DNA Barcoding. Sci Rep 2019; 9:7530. [PMID: 31101898 PMCID: PMC6525184 DOI: 10.1038/s41598-019-43930-z] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2018] [Accepted: 05/03/2019] [Indexed: 01/29/2023] Open
Abstract
Deltas are dynamic and productive systems of enormous ecological significance, encompassing unique and biologically diverse wetland habitats. Here, we present the first data on the molecular diversity of the fish fauna of the Parnaíba Delta, the largest deltaic formation of the Americas. Partial sequences (626 bp) of the mitochondrial COI gene (Cytochrome c oxidase subunit I) were used to barcode 402 individuals, representing 128 species, belonging to 98 genera, 57 families, 17 orders and two classes. The most abundant orders were the Perciformes, Siluriformes, Gobiiformes, and Pleuronectiformes. The Neighbor-Joining (NJ), Bayesian Inference (BI), and BIN analyses produced 103 molecular clusters, while the Automatic Barcode Gap Discovery (ABGD) and Maximum Likelihood (ML) approaches revealed 102 clusters. The mean conspecific, congeneric and confamilial genetic distances were 0.33%, 14.37%, and 18.60%, respectively. Intraspecific divergence ranged from 0.0% to 1.4%, and all species presented barcode gaps, with the exception of two clusters of Cathorops spixii (OTU 96 and OTU 103), which were separated by a low interspecific distance (1.2%), which overlaps the maximum intraspecific genetic distance (1.4%). The barcode data provide new insights into the fish diversity of the Parnaíba Delta, which will be important for the development of further research on this fauna.
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Silva TFD, Schneider H, Sampaio I, Angulo A, Brito MFG, Santos ACDA, de Andrade Santos J, Carvalho-Filho A, Santos S. Phylogeny of the subfamily Stelliferinae suggests speciation in Ophioscion Gill, 1863 (Sciaenidae: Perciformes) in the western South Atlantic. Mol Phylogenet Evol 2018; 125:51-61. [PMID: 29567506 DOI: 10.1016/j.ympev.2018.03.025] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2017] [Revised: 02/19/2018] [Accepted: 03/17/2018] [Indexed: 11/17/2022]
Abstract
Phylogenies based on morphological and molecular data confirm the monophyly of the subfamily Stelliferinae; however, there is no consensus on the intergeneric and interspecific relationships in the group. Previous studies suggested the non-monophyly of Ophioscion and Stellifer, and possible cryptic species in Ophioscion punctatissimus. Therefore, we used mitochondrial (16S rDNA and COI) and nuclear (Rhodopsin, EGR1, and RAG1) regions to examine phylogenetic relationships among species of this subfamily. Our results confirmed the monophyly of Stelliferinae and supports the close relationship among Bardiella, Corvula and Odontoscion, which form a sister group to Stellifer and Ophioscion. Notwithstanding, all the results support the non-monophyly of Stellifer and Ophioscion and we suggest that a taxonomic revision should consider Ophioscion as a junior synonym of Stellifer. Moreover, O. punctatissimus was grouped into two clades, with the O. punctatissimus lineage I (LI) being closer to O. scierus from the eastern Pacific than to the O. punctatissimus lineage II (LII). The most recent common ancestor (TMRCA) for the O. scierus and O. punctatissimus LI and O. punctatissimus LII clade dates from 7.2 (HPD: 4.3-10.5) Ma, whereas TMRCA for the O. scierus and O. punctatissimus LI clade dates from 5.3 (HPD: 2.4-8.6) Ma, indicating that speciation processes may be related to the rise of the Isthmus of Panama. Phylogeographic analyses corroborate the hypothesis of speciation in O. punctatissimus. These results suggest that lineages of O. punctatissimus originated from distinct ancestors and, by morphological similarity, were considered the same taxon. A taxonomic revision should be performed to validate the species status of such lineages.
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Affiliation(s)
- Tárcia Fernanda da Silva
- Laboratório de Genética e Biologia Molecular, Universidade Federal do Pará, Instituto de Estudos Costeiros, Alameda Leandro Ribeiro s/n, 68600-000 Bragança, Pará, Brazil.
| | - Horacio Schneider
- Laboratório de Genética e Biologia Molecular, Universidade Federal do Pará, Instituto de Estudos Costeiros, Alameda Leandro Ribeiro s/n, 68600-000 Bragança, Pará, Brazil.
| | - Iracilda Sampaio
- Laboratório de Genética e Biologia Molecular, Universidade Federal do Pará, Instituto de Estudos Costeiros, Alameda Leandro Ribeiro s/n, 68600-000 Bragança, Pará, Brazil.
| | - Arturo Angulo
- Museo de Zoología and Centro de Investigación en Ciencias del Mar y Limnologia (CIMAR), Universidad de Costa Rica, 11501-2060, San Pedro de Montes de Oca, San José, Costa Rica.
| | - Marcelo Fulgêncio Guedes Brito
- Programa de Pós-Graduação em Ecologia e Conservação, Universidade Federal de Sergipe (UFS), Avenida Marechal Rondon, s/n, 49100-000 São Cristóvão, Sergipe, Brazil.
| | - Alexandre Clistenes de Alcântara Santos
- Laboratório de Ictiologia, Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana (UEFS), Avenida Transnordestina, s/n, 44036-900 Feira de Santana, Bahia, Brazil.
| | - Jonas de Andrade Santos
- Laboratório de Ictiologia, Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana (UEFS), Avenida Transnordestina, s/n, 44036-900 Feira de Santana, Bahia, Brazil.
| | | | - Simoni Santos
- Laboratório de Genética e Biologia Molecular, Universidade Federal do Pará, Instituto de Estudos Costeiros, Alameda Leandro Ribeiro s/n, 68600-000 Bragança, Pará, Brazil.
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