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For: Wang JK, Li TX, Bai YF, Lu ZH. Evaluating the binding affinities of NF-kappaB p50 homodimer to the wild-type and single-nucleotide mutant Ig-kappaB sites by the unimolecular dsDNA microarray. Anal Biochem 2003;316:192-201. [PMID: 12711340 DOI: 10.1016/s0003-2697(03)00049-6] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Number Cited by Other Article(s)
1
Dai W, Wu J, Wang D, Wang J. Cancer gene therapy by NF-κB-activated cancer cell-specific expression of CRISPR/Cas9 targeting telomeres. Gene Ther 2020;27:266-280. [DOI: 10.1038/s41434-020-0128-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2019] [Revised: 01/22/2020] [Accepted: 01/28/2020] [Indexed: 02/07/2023]
2
Wu J, Wang Q, Dai W, Wang W, Yue M, Wang J. Massive GGAAs in genomic repetitive sequences serve as a nuclear reservoir of NF-κB. J Genet Genomics 2018;45:193-203. [PMID: PMID : 29748061 DOI: 10.1016/j.jgg.2018.04.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2017] [Revised: 04/05/2018] [Accepted: 04/09/2018] [Indexed: 12/01/2022]
3
Siggers T, Gilmore TD, Barron B, Penvose A. Characterizing the DNA binding site specificity of NF-κB with protein-binding microarrays (PBMs). Methods Mol Biol 2015;1280:609-30. [PMID: 25736775 DOI: 10.1007/978-1-4939-2422-6_36] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
4
Du W, Gao J, Wang T, Wang J. Single-nucleotide mutation matrix: a new model for predicting the NF-κB DNA binding sites. PLoS One 2014;9:e101490. [PMID: 24992458 PMCID: PMC4081663 DOI: 10.1371/journal.pone.0101490] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2013] [Accepted: 06/09/2014] [Indexed: 11/18/2022]  Open
5
Zhou F, Ling X, Yin J, Wang J. Analyzing transcription factor activity using near infrared fluorescent bridge polymerase chain reaction. Anal Biochem 2013;448:105-12. [PMID: 24333250 DOI: 10.1016/j.ab.2013.12.003] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2013] [Revised: 11/26/2013] [Accepted: 12/02/2013] [Indexed: 02/05/2023]
6
An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example. PLoS One 2013;8:e76109. [PMID: 24130762 PMCID: PMC3794954 DOI: 10.1371/journal.pone.0076109] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2013] [Accepted: 08/20/2013] [Indexed: 12/29/2022]  Open
7
Xing Y, Yang Y, Zhou F, Wang J. Characterization of genome-wide binding of NF-κB in TNFα-stimulated HeLa cells. Gene 2013;526:142-9. [PMID: 23688556 DOI: 10.1016/j.gene.2013.05.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2012] [Revised: 04/28/2013] [Accepted: 05/01/2013] [Indexed: 01/06/2023]
8
Atypical IκB proteins - nuclear modulators of NF-κB signaling. Cell Commun Signal 2013;11:23. [PMID: 23578005 PMCID: PMC3639191 DOI: 10.1186/1478-811x-11-23] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2012] [Accepted: 03/28/2013] [Indexed: 01/01/2023]  Open
9
[The databases of transcription factors.]. YI CHUAN = HEREDITAS 2012;32:1009-17. [PMID: 20943488 DOI: 10.3724/sp.j.1005.2010.01009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
10
Shah PS, Schaffer DV. Response to "HIV Escape From RNAi Antivirals: Yet Another Houdini Action?". MOLECULAR THERAPY. NUCLEIC ACIDS 2012;1:e28. [PMID: 23344080 PMCID: PMC3390221 DOI: 10.1038/mtna.2012.23] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
11
HIV develops indirect cross-resistance to combinatorial RNAi targeting two distinct and spatially distant sites. Mol Ther 2012;20:840-8. [PMID: 22294151 DOI: 10.1038/mt.2012.3] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
12
Li M, Ge Q, Wang W, Wang J, Lu Z. c-Jun binding site identification in K562 cells. J Genet Genomics 2011;38:235-42. [PMID: 21703547 DOI: 10.1016/j.jgg.2011.05.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2011] [Revised: 05/10/2011] [Accepted: 05/10/2011] [Indexed: 12/21/2022]
13
Alamanova D, Stegmaier P, Kel A. Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies. BMC Bioinformatics 2010;11:225. [PMID: 20438625 PMCID: PMC2879287 DOI: 10.1186/1471-2105-11-225] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2009] [Accepted: 05/03/2010] [Indexed: 12/03/2022]  Open
14
Berger MF, Bulyk ML. Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors. Nat Protoc 2009;4:393-411. [PMID: 19265799 DOI: 10.1038/nprot.2008.195] [Citation(s) in RCA: 268] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
15
Leonard JN, Shah PS, Burnett JC, Schaffer DV. HIV evades RNA interference directed at TAR by an indirect compensatory mechanism. Cell Host Microbe 2008;4:484-94. [PMID: 18996348 DOI: 10.1016/j.chom.2008.09.008] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2007] [Revised: 08/11/2008] [Accepted: 09/08/2008] [Indexed: 02/06/2023]
16
Pan Q, Zhang R, Bai Y, He N, Lu Z. An electrochemical approach for detection of specific DNA-binding protein by gold nanoparticle-catalyzed silver enhancement. Anal Biochem 2007;375:179-86. [PMID: 18164677 DOI: 10.1016/j.ab.2007.12.006] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2007] [Revised: 11/23/2007] [Accepted: 12/03/2007] [Indexed: 11/25/2022]
17
Lu Z. Novel microarray technology for post-genomic studies. CONFERENCE PROCEEDINGS : ... ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL CONFERENCE 2007;2006:515-7. [PMID: 17282230 DOI: 10.1109/iembs.2005.1616461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
18
Lu ZH. Genetic data acquirement, construction and analysis based on microarray technology. CONFERENCE PROCEEDINGS : ... ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL CONFERENCE 2007;2004:2945-7. [PMID: 17270895 DOI: 10.1109/iembs.2004.1403836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
19
Zhu Q, Hong A, Sheng N, Zhang X, Matejko A, Jun KY, Srivannavit O, Gulari E, Gao X, Zhou X. microParaflo biochip for nucleic acid and protein analysis. Methods Mol Biol 2007;382:287-312. [PMID: 18220239 DOI: 10.1007/978-1-59745-304-2_19] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
20
Field S, Udalova I, Ragoussis J. Accuracy and reproducibility of protein-DNA microarray technology. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2006;104:87-110. [PMID: 17290820 DOI: 10.1007/10_2006_035] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
21
Wang J, Li ML, Hua D, Chen Q. Exonuclease-mediated ELISA-like assay for detecting DNA-binding activity of transcription factors: measurement of activated NF-kappaB. Biotechniques 2006;41:79-88, 90. [PMID: 16869518 DOI: 10.2144/000112218] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
22
Chen Z, Ji M, Hou P, Lu Z. Exo-Dye-based assay for rapid, inexpensive, and sensitive detection of DNA-binding proteins. Biochem Biophys Res Commun 2006;345:1254-63. [PMID: 16716262 DOI: 10.1016/j.bbrc.2006.05.012] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2006] [Accepted: 05/02/2006] [Indexed: 10/24/2022]
23
Sasuga Y, Tani T, Hayashi M, Yamakawa H, Ohara O, Harada Y. Development of a microscopic platform for real-time monitoring of biomolecular interactions. Genome Res 2005;16:132-9. [PMID: 16344567 PMCID: PMC1356137 DOI: 10.1101/gr.4235806] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
24
Wang JK, Li TX, Lu ZH. A method for fabricating uni-dsDNA microarray chip for analyzing DNA-binding proteins. ACTA ACUST UNITED AC 2005;63:100-10. [PMID: 15913781 DOI: 10.1016/j.jbbm.2005.03.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2004] [Revised: 03/09/2005] [Accepted: 03/13/2005] [Indexed: 11/21/2022]
25
Fukumori T, Miyachi H, Yokoyama K. Exo-Taq-Based Detection of DNA-Binding Protein for Homogeneous and Microarray Format. ACTA ACUST UNITED AC 2005;138:473-8. [PMID: 16272142 DOI: 10.1093/jb/mvi137] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
26
Feriotto G, Finotti A, Volpe P, Treves S, Ferrari S, Angelelli C, Zorzato F, Gambari R. Myocyte enhancer factor 2 activates promoter sequences of the human AbetaH-J-J locus, encoding aspartyl-beta-hydroxylase, junctin, and junctate. Mol Cell Biol 2005;25:3261-75. [PMID: 15798210 PMCID: PMC1069596 DOI: 10.1128/mcb.25.8.3261-3275.2005] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
27
Bai Y, Ge Q, Wang J, Li T, Liu Q, Lu Z. Investigation of DNA-protein sequence-specific interactions with a ds-DNA array. Molecules 2005;10:417-26. [PMID: 18007313 PMCID: PMC6148458 DOI: 10.3390/10020417] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2004] [Revised: 12/21/2004] [Accepted: 12/22/2004] [Indexed: 12/04/2022]  Open
28
Bai Y, Ge Q, Wang J, Li T, Liu Q, Lu Z. Optimization of on-chip elongation for fabricating double-stranded DNA microarrays. Colloids Surf B Biointerfaces 2005;40:153-8. [PMID: 15708505 DOI: 10.1016/j.colsurfb.2004.10.019] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
29
Wang J, Li T, Guo X, Lu Z. Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins. Nucleic Acids Res 2005;33:e23. [PMID: 15687381 PMCID: PMC548379 DOI: 10.1093/nar/gni021] [Citation(s) in RCA: 90] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
30
Bujoli B, Lane SM, Nonglaton G, Pipelier M, Léger J, Talham DR, Tellier C. Metal Phosphonates Applied to Biotechnologies: A Novel Approach to Oligonucleotide Microarrays. Chemistry 2005;11:1980-8. [PMID: 15669062 DOI: 10.1002/chem.200400960] [Citation(s) in RCA: 87] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
31
Linnell J, Mott R, Field S, Kwiatkowski DP, Ragoussis J, Udalova IA. Quantitative high-throughput analysis of transcription factor binding specificities. Nucleic Acids Res 2004;32:e44. [PMID: 14990752 PMCID: PMC390317 DOI: 10.1093/nar/gnh042] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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